| CNTNAP2 | Q9UHC6 | AC012445.1-201 | ENST00000442831 | 607 nt | TSL 3 BASIC | 5.4 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | MTND4P10-201 | ENST00000446199 | 1363 nt | BASIC | 5.4 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | CASP12-208 | ENST00000448103 | 1071 nt | TSL 1 (best) BASIC | 5.4 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | AL137001.1-201 | ENST00000450212 | 199 nt | TSL 3 BASIC | 5.4 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | AL359715.2-201 | ENST00000452402 | 682 nt | TSL 2 BASIC | 5.4 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | AL137847.2-201 | ENST00000458111 | 527 nt | TSL 3 BASIC | 5.4 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | AC245028.2-201 | ENST00000458673 | 253 nt | BASIC | 5.4 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | CASP12-210 | ENST00000494737 | 961 nt | TSL 1 (best) BASIC | 5.4 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | AC105460.2-202 | ENST00000502936 | 825 nt | TSL 2 BASIC | 5.4 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | AC112184.1-201 | ENST00000505179 | 312 nt | BASIC | 5.4 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | AC115622.1-201 | ENST00000509628 | 587 nt | TSL 3 BASIC | 5.4 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | AC092593.2-201 | ENST00000513866 | 913 nt | BASIC | 5.4 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | LINC02382-201 | ENST00000515840 | 614 nt | TSL 1 (best) BASIC | 5.4 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | AC022360.2-201 | ENST00000522390 | 456 nt | TSL 3 BASIC | 5.4 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | OR4R2P-201 | ENST00000530815 | 597 nt | BASIC | 5.4 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | AP000753.2-201 | ENST00000540307 | 423 nt | TSL 3 BASIC | 5.4 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | AC078880.2-201 | ENST00000547948 | 843 nt | TSL 1 (best) BASIC | 5.4 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | DNAL1-205 | ENST00000554339 | 548 nt | TSL 5 BASIC | 5.4 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | AL132712.2-201 | ENST00000556653 | 127 nt | TSL 3 BASIC | 5.4 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | CXXC1P1-203 | ENST00000589302 | 746 nt | TSL 3 BASIC | 5.4 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | CERS6-AS1-204 | ENST00000599361 | 536 nt | TSL 4 BASIC | 5.4 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | MTRNR2L12-201 | ENST00000600213 | 1049 nt | APPRIS P1 BASIC | 5.4 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | PDZPH1P-202 | ENST00000602846 | 722 nt | TSL 3 BASIC | 5.4 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | NAA60-237 | ENST00000615865 | 326 nt | TSL 5 BASIC | 5.4 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | AL049794.2-201 | ENST00000616301 | 365 nt | BASIC | 5.4 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | CR381572.2-201 | ENST00000624852 | 397 nt | BASIC | 5.4 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | GOLT1B-210 | ENST00000631252 | 223 nt | TSL 3 BASIC | 5.4 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | AL390862.1-201 | ENST00000635467 | 1469 nt | BASIC | 5.4 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | PCDH15-201 | ENST00000320301 | 6845 nt | TSL 1 (best) BASIC | 5.4 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | AC005005.4-201 | ENST00000623789 | 16698 nt | BASIC | 5.4 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | MEG8-223 | ENST00000638012 | 3757 nt | TSL 5 BASIC | 5.4 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | AC093849.1-201 | ENST00000563631 | 2209 nt | BASIC | 5.39 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | SYTL2-204 | ENST00000389958 | 1943 nt | TSL 2 BASIC | 5.39 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | DPY19L2P2-203 | ENST00000435536 | 1858 nt | BASIC | 5.39 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | USP26-203 | ENST00000511190 | 3665 nt | APPRIS P1 TSL 2 BASIC | 5.39 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | AC112198.2-201 | ENST00000426589 | 6996 nt | BASIC | 5.39 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | GLRA2-202 | ENST00000355020 | 1730 nt | APPRIS ALT1 TSL 1 (best) BASIC | 5.39 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | MAP3K7-201 | ENST00000369320 | 3328 nt | TSL 5 BASIC | 5.39 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | IPCEF1-203 | ENST00000422970 | 3267 nt | APPRIS ALT2 TSL 1 (best) BASIC | 5.39 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | KLRC4-KLRK1-201 | ENST00000539300 | 1507 nt | APPRIS P5 TSL 2 BASIC | 5.39 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | ZNF616-204 | ENST00000600228 | 4335 nt | APPRIS P1 TSL 1 (best) BASIC | 5.39 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | NAP1L4P1-201 | ENST00000319092 | 1157 nt | BASIC | 5.39 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | C1orf146-201 | ENST00000370373 | 871 nt | TSL 5 BASIC | 5.39 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | SNORA56-201 | ENST00000383966 | 129 nt | BASIC | 5.39 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | RN7SKP100-201 | ENST00000411258 | 284 nt | BASIC | 5.39 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | AL590609.3-201 | ENST00000411815 | 210 nt | TSL 3 BASIC | 5.39 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | RPL26P29-201 | ENST00000415623 | 438 nt | BASIC | 5.39 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | AL160272.1-201 | ENST00000421509 | 521 nt | TSL 3 BASIC | 5.39 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | LINC01688-201 | ENST00000435492 | 259 nt | TSL 1 (best) BASIC | 5.39 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | CDY12P-201 | ENST00000440679 | 1015 nt | BASIC | 5.39 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | AP000770.1-201 | ENST00000444123 | 583 nt | TSL 5 BASIC | 5.39 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | CDY13P-201 | ENST00000445813 | 1015 nt | BASIC | 5.39 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | AL732323.1-201 | ENST00000445897 | 456 nt | TSL 3 BASIC | 5.39 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | Z83846.1-201 | ENST00000446798 | 265 nt | BASIC | 5.39 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | AC000111.2-201 | ENST00000448200 | 210 nt | BASIC | 5.39 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | MTND1P27-201 | ENST00000451117 | 902 nt | BASIC | 5.39 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | PCBP1-AS1-237 | ENST00000452431 | 1194 nt | TSL 4 BASIC | 5.39 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | SATB1-AS1-204 | ENST00000453361 | 726 nt | TSL 3 BASIC | 5.39 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | AL513533.1-201 | ENST00000453728 | 415 nt | BASIC | 5.39 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | MTND2P6-201 | ENST00000455337 | 1030 nt | BASIC | 5.39 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | TPTE2P5-203 | ENST00000458118 | 728 nt | BASIC | 5.39 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | MTCO2P6-201 | ENST00000463134 | 685 nt | BASIC | 5.39 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | GSTM1-206 | ENST00000483399 | 512 nt | TSL 3 BASIC | 5.39 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | TMED11P-203 | ENST00000502630 | 533 nt | TSL 5 BASIC | 5.39 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | F11-AS1-201 | ENST00000505103 | 1178 nt | TSL 1 (best) BASIC | 5.39 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | SMAD1-AS2-201 | ENST00000508936 | 1090 nt | TSL 1 (best) BASIC | 5.39 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | AC114284.1-201 | ENST00000511422 | 1114 nt | TSL 2 BASIC | 5.39 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | OR7H2P-201 | ENST00000513483 | 306 nt | BASIC | 5.39 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | AL117351.2-201 | ENST00000513571 | 157 nt | BASIC | 5.39 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | AC110760.1-201 | ENST00000513770 | 590 nt | TSL 3 BASIC | 5.39 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | LINC02484-201 | ENST00000513843 | 546 nt | TSL 5 BASIC | 5.39 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | MORF4L1P3-201 | ENST00000525966 | 950 nt | BASIC | 5.39 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | AP003033.1-201 | ENST00000527244 | 415 nt | BASIC | 5.39 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | ATXN3-215 | ENST00000532032 | 1191 nt | TSL 1 (best) BASIC | 5.39 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | AC018523.2-201 | ENST00000555531 | 1221 nt | APPRIS P1 TSL 2 BASIC | 5.39 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | AL390726.5-202 | ENST00000564800 | 256 nt | BASIC | 5.39 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | AC110760.3-201 | ENST00000598794 | 467 nt | BASIC | 5.39 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | AL512782.1-201 | ENST00000603093 | 364 nt | BASIC | 5.39 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | AC104687.2-201 | ENST00000604442 | 342 nt | BASIC | 5.39 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | LINC02112-204 | ENST00000606222 | 429 nt | TSL 5 BASIC | 5.39 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | AF230666.1-202 | ENST00000608375 | 870 nt | TSL 5 BASIC | 5.39 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | AC004943.3-201 | ENST00000624116 | 600 nt | BASIC | 5.39 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | LINC02342-201 | ENST00000627910 | 461 nt | TSL 5 BASIC | 5.39 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | AJ009632.2-207 | ENST00000634659 | 527 nt | TSL 5 BASIC | 5.39 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | OR2M2-202 | ENST00000641211 | 1229 nt | APPRIS P1 BASIC | 5.39 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | RAP1GDS1-206 | ENST00000453712 | 2470 nt | APPRIS ALT1 TSL 1 (best) BASIC | 5.39 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | EIF4EBP2-201 | ENST00000373218 | 7257 nt | APPRIS P1 TSL 1 (best) BASIC | 5.39 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | PNLIPRP3-201 | ENST00000369230 | 2354 nt | APPRIS P1 TSL 1 (best) BASIC | 5.39 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | DNAH5-201 | ENST00000265104 | 15633 nt | APPRIS P1 TSL 1 (best) BASIC | 5.39 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | ZNF845-201 | ENST00000458035 | 4311 nt | APPRIS P1 TSL 4 BASIC | 5.39 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | SMC2-202 | ENST00000374787 | 4266 nt | APPRIS P1 TSL 2 BASIC | 5.39 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | CFI-202 | ENST00000394635 | 2053 nt | APPRIS ALT2 TSL 2 BASIC | 5.39 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | GABRG2-203 | ENST00000414552 | 3927 nt | TSL 1 (best) BASIC | 5.39 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | OR8J2-201 | ENST00000641465 | 2883 nt | APPRIS P1 BASIC | 5.39 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | CLVS1-205 | ENST00000519846 | 3622 nt | APPRIS P1 TSL 5 BASIC | 5.38 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | ZNF334-203 | ENST00000593880 | 2635 nt | TSL 1 (best) BASIC | 5.38 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | PHLDB2-214 | ENST00000495180 | 4159 nt | TSL 2 BASIC | 5.38 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | LINC02476-201 | ENST00000426413 | 1577 nt | TSL 2 BASIC | 5.38 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | AC011447.7-201 | ENST00000624228 | 1590 nt | BASIC | 5.38 | □□□□□ -1.55 | | |
| CNTNAP2 | Q9UHC6 | SAMMSON-226 | ENST00000642089 | 1582 nt | BASIC | 5.38 | □□□□□ -1.55 | | |