Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 IPPKP1-201ENST00000422501 768 ntBASIC6.9□□□□□ -1.3
CCDC39Q9UFE4 OR6K4P-201ENST00000423179 955 ntBASIC6.9□□□□□ -1.3
CCDC39Q9UFE4 LCE6A-201ENST00000431011 628 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
CCDC39Q9UFE4 VAV3-AS1-201ENST00000438318 619 ntTSL 2 BASIC6.9□□□□□ -1.3
CCDC39Q9UFE4 LARGE-IT1-201ENST00000445391 558 ntTSL 4 BASIC6.9□□□□□ -1.3
CCDC39Q9UFE4 AC007383.1-201ENST00000445875 636 ntBASIC6.9□□□□□ -1.3
CCDC39Q9UFE4 AL158835.1-204ENST00000449693 371 ntTSL 3 BASIC6.9□□□□□ -1.3
CCDC39Q9UFE4 LINC00704-203ENST00000449712 703 ntTSL 3 BASIC6.9□□□□□ -1.3
CCDC39Q9UFE4 AC010789.1-201ENST00000458489 291 ntTSL 5 BASIC6.9□□□□□ -1.3
CCDC39Q9UFE4 AC080013.1-206ENST00000496842 712 ntTSL 2 BASIC6.9□□□□□ -1.3
CCDC39Q9UFE4 AC005178.1-201ENST00000508392 440 ntBASIC6.9□□□□□ -1.3
CCDC39Q9UFE4 TPM3P3-201ENST00000521343 354 ntBASIC6.9□□□□□ -1.3
CCDC39Q9UFE4 NPIPB14P-203ENST00000532298 987 ntBASIC6.9□□□□□ -1.3
CCDC39Q9UFE4 LRTOMT-218ENST00000541614 726 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
CCDC39Q9UFE4 IFNG-AS1-203ENST00000541715 902 ntTSL 3 BASIC6.9□□□□□ -1.3
CCDC39Q9UFE4 TRPT1-216ENST00000546133 382 ntTSL 2 BASIC6.9□□□□□ -1.3
CCDC39Q9UFE4 AC022523.1-201ENST00000560360 364 ntTSL 5 BASIC6.9□□□□□ -1.3
CCDC39Q9UFE4 RNU4ATAC-201ENST00000580972 127 ntBASIC6.9□□□□□ -1.3
CCDC39Q9UFE4 LINC01908-201ENST00000583148 555 ntTSL 4 BASIC6.9□□□□□ -1.3
CCDC39Q9UFE4 AC093330.1-201ENST00000583326 568 ntTSL 4 BASIC6.9□□□□□ -1.3
CCDC39Q9UFE4 LAMTOR5-AS1-203ENST00000585330 463 ntTSL 2 BASIC6.9□□□□□ -1.3
CCDC39Q9UFE4 AL359757.1-201ENST00000623176 255 ntBASIC6.9□□□□□ -1.3
CCDC39Q9UFE4 AL357140.4-201ENST00000636827 412 ntBASIC6.9□□□□□ -1.3
CCDC39Q9UFE4 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC6.9□□□□□ -1.3
CCDC39Q9UFE4 MYBPC1-214ENST00000549145 4031 ntAPPRIS ALT2 TSL 5 BASIC6.9□□□□□ -1.3
CCDC39Q9UFE4 CWF19L2-201ENST00000282251 3278 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.31
CCDC39Q9UFE4 CAP1P2-201ENST00000417455 1409 ntBASIC6.9□□□□□ -1.31
CCDC39Q9UFE4 LZTFL1-215ENST00000536047 4342 ntTSL 2 BASIC6.9□□□□□ -1.31
CCDC39Q9UFE4 RABGAP1L-208ENST00000392064 6282 ntTSL 1 (best) BASIC6.9□□□□□ -1.31
CCDC39Q9UFE4 AC006288.1-201ENST00000565320 1463 ntTSL 3 BASIC6.9□□□□□ -1.31
CCDC39Q9UFE4 ZNF112-202ENST00000354340 3654 ntAPPRIS P3 TSL 1 (best) BASIC6.9□□□□□ -1.31
CCDC39Q9UFE4 AC090229.1-201ENST00000590983 1609 ntBASIC6.9□□□□□ -1.31
CCDC39Q9UFE4 AC087565.3-202ENST00000642085 1603 ntBASIC6.9□□□□□ -1.31
CCDC39Q9UFE4 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC6.9□□□□□ -1.31
CCDC39Q9UFE4 LINC02010-202ENST00000471638 1829 ntTSL 1 (best) BASIC6.9□□□□□ -1.31
CCDC39Q9UFE4 AP005435.3-201ENST00000531260 3198 ntBASIC6.9□□□□□ -1.31
CCDC39Q9UFE4 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 ZNF146-201ENST00000443387 3326 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 LINC01204-202ENST00000435394 2214 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 RFFL-202ENST00000394597 4227 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 SPINK5-203ENST00000398454 2915 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 DNAJC12-201ENST00000225171 1201 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 TEX43-201ENST00000357147 464 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 RN7SKP81-201ENST00000365603 331 ntBASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 FCGR1B-202ENST00000369383 570 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 RNU6-157P-201ENST00000383957 107 ntBASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 SULT1C2-204ENST00000409880 1206 ntTSL 3 BASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 RNA5SP156-201ENST00000410250 110 ntBASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 RNU2-66P-201ENST00000410650 161 ntBASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 LINC01614-201ENST00000415479 648 ntTSL 2 BASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 RPS7P8-201ENST00000418311 581 ntBASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 OSBPL10-AS1-202ENST00000418728 458 ntTSL 5 BASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 OFD1P18Y-201ENST00000420889 959 ntBASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 TTTY21B-201ENST00000421353 307 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 AC078960.1-201ENST00000422160 177 ntTSL 5 BASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 AL603910.1-201ENST00000423099 370 ntTSL 3 BASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 TTTY21-201ENST00000430228 307 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 PSMD10P2-201ENST00000432890 672 ntBASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 AC138761.5-201ENST00000433967 325 ntBASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 AL354941.1-201ENST00000438600 464 ntBASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 PTGES3P1-201ENST00000439531 483 ntBASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 AC112653.1-201ENST00000443851 386 ntBASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 AC097359.1-201ENST00000447946 463 ntBASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 AC011752.1-201ENST00000451476 494 ntTSL 5 BASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 AC107015.1-201ENST00000466902 747 ntBASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 APOPT1-204ENST00000473127 739 ntTSL 3 BASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 AC005017.1-201ENST00000482002 490 ntBASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 RPL23AP44-201ENST00000482216 473 ntBASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 AC016687.1-201ENST00000482574 353 ntBASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 RPL12P30-201ENST00000488389 499 ntBASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 AC106895.1-202ENST00000502956 777 ntTSL 3 BASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 AC034226.1-201ENST00000506429 487 ntTSL 2 BASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 LINC02383-201ENST00000508563 582 ntTSL 3 BASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 AC008957.1-203ENST00000508745 589 ntTSL 3 BASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 ZNF519P4-201ENST00000514008 125 ntBASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 C1GALT1P3-201ENST00000522049 819 ntBASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 AP002370.2-202ENST00000533669 908 ntTSL 5 BASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 OLR1-209ENST00000543993 822 ntTSL 2 BASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 GPRC5D-AS1-208ENST00000545914 566 ntTSL 3 BASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 AC078922.1-201ENST00000547547 434 ntTSL 3 BASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 LINC02303-202ENST00000554711 531 ntTSL 3 BASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 CNEP1R1-204ENST00000562576 656 ntTSL 5 BASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 TPRKBP2-201ENST00000565969 475 ntBASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 MIR744-201ENST00000578242 98 ntBASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 RN7SL230P-201ENST00000580835 303 ntBASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 AC093484.5-201ENST00000585048 304 ntTSL 3 BASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 AC011507.1-201ENST00000585364 567 ntTSL 4 BASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 AC011476.3-202ENST00000586845 553 ntTSL 3 BASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 AC011524.2-201ENST00000589198 399 ntTSL 3 BASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 AC091805.2-201ENST00000603848 235 ntBASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 AP000942.4-201ENST00000604811 241 ntBASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 NDUFA8P1-201ENST00000605525 367 ntBASIC6.89□□□□□ -1.31
CCDC39Q9UFE4 AC006270.3-201ENST00000605967 1036 ntBASIC6.89□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 78.9 ms