Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 RYR3-208ENST00000622037 15564 ntAPPRIS ALT2 TSL 5 BASIC7.54□□□□□ -1.2
CUX1P39880 ICE2-201ENST00000261520 7209 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
CUX1P39880 OR10A6-203ENST00000641238 6052 ntAPPRIS P1 BASIC7.54□□□□□ -1.2
CUX1P39880 MIR208A-201ENST00000362287 71 ntBASIC7.54□□□□□ -1.2
CUX1P39880 AC079809.1-201ENST00000415468 276 ntBASIC7.54□□□□□ -1.2
CUX1P39880 LINC01881-201ENST00000416103 412 ntBASIC7.54□□□□□ -1.2
CUX1P39880 EIF4HP2-201ENST00000424380 563 ntBASIC7.54□□□□□ -1.2
CUX1P39880 AL356276.2-201ENST00000435919 558 ntBASIC7.54□□□□□ -1.2
CUX1P39880 AC073636.1-202ENST00000457756 558 ntTSL 4 BASIC7.54□□□□□ -1.2
CUX1P39880 TPT1P3-201ENST00000492841 512 ntBASIC7.54□□□□□ -1.2
CUX1P39880 MTCO1P49-201ENST00000523429 802 ntBASIC7.54□□□□□ -1.2
CUX1P39880 CASC19-203ENST00000523510 575 ntTSL 3 BASIC7.54□□□□□ -1.2
CUX1P39880 AC026462.4-201ENST00000565229 951 ntTSL 3 BASIC7.54□□□□□ -1.2
CUX1P39880 AL356056.1-205ENST00000608904 651 ntTSL 5 BASIC7.54□□□□□ -1.2
CUX1P39880 AC015804.1-201ENST00000622935 435 ntBASIC7.54□□□□□ -1.2
CUX1P39880 AL445363.3-201ENST00000623080 671 ntBASIC7.54□□□□□ -1.2
CUX1P39880 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
CUX1P39880 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC7.54□□□□□ -1.2
CUX1P39880 TCF4-284ENST00000637169 7553 ntTSL 5 BASIC7.54□□□□□ -1.2
CUX1P39880 CEP120-203ENST00000328236 4710 ntAPPRIS P1 TSL 5 BASIC7.54□□□□□ -1.2
CUX1P39880 BMPR1B-202ENST00000394931 1922 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
CUX1P39880 ZNF268-205ENST00000536435 13475 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
CUX1P39880 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
CUX1P39880 ZNF284-201ENST00000421176 4351 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
CUX1P39880 LIN7C-201ENST00000278193 4688 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
CUX1P39880 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
CUX1P39880 AGO2-201ENST00000220592 14581 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
CUX1P39880 OR2M5-201ENST00000366476 939 ntAPPRIS P1 BASIC7.53□□□□□ -1.2
CUX1P39880 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
CUX1P39880 AC007738.1-201ENST00000413892 348 ntBASIC7.53□□□□□ -1.2
CUX1P39880 RPL21P43-201ENST00000425440 472 ntBASIC7.53□□□□□ -1.2
CUX1P39880 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC7.53□□□□□ -1.2
CUX1P39880 AC104651.2-201ENST00000447549 528 ntBASIC7.53□□□□□ -1.2
CUX1P39880 SNHG27-203ENST00000514222 680 ntTSL 3 BASIC7.53□□□□□ -1.2
CUX1P39880 AC097486.1-201ENST00000515331 210 ntBASIC7.53□□□□□ -1.2
CUX1P39880 RNU1-45P-201ENST00000517191 141 ntBASIC7.53□□□□□ -1.2
CUX1P39880 AC007546.1-201ENST00000619452 559 ntBASIC7.53□□□□□ -1.2
CUX1P39880 ADAM5-202ENST00000399789 1942 ntBASIC7.53□□□□□ -1.2
CUX1P39880 ADGRL3-218ENST00000514996 4731 ntAPPRIS ALT2 TSL 5 BASIC7.53□□□□□ -1.2
CUX1P39880 PIGK-202ENST00000370812 4596 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
CUX1P39880 NXPE4-202ENST00000424261 1687 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
CUX1P39880 SLC4A7-206ENST00000428386 7385 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
CUX1P39880 C3orf67-AS1-202ENST00000482372 2203 ntTSL 2 BASIC7.53□□□□□ -1.2
CUX1P39880 AC017104.4-201ENST00000636283 1592 ntBASIC7.53□□□□□ -1.2
CUX1P39880 PLA2R1-201ENST00000283243 14371 ntAPPRIS P3 TSL 1 (best) BASIC7.53□□□□□ -1.2
CUX1P39880 IGLV4-3-201ENST00000390318 403 ntAPPRIS P1 BASIC7.52□□□□□ -1.2
CUX1P39880 AC006326.1-201ENST00000445465 787 ntBASIC7.52□□□□□ -1.2
CUX1P39880 GLRX-206ENST00000508780 533 ntAPPRIS P1 TSL 4 BASIC7.52□□□□□ -1.2
CUX1P39880 NDUFB4P12-201ENST00000513465 390 ntBASIC7.52□□□□□ -1.2
CUX1P39880 AC110760.1-201ENST00000513770 590 ntTSL 3 BASIC7.52□□□□□ -1.2
CUX1P39880 AC090403.1-202ENST00000582108 833 ntTSL 3 BASIC7.52□□□□□ -1.2
CUX1P39880 AC023762.1-201ENST00000603280 584 ntBASIC7.52□□□□□ -1.2
CUX1P39880 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC7.52□□□□□ -1.21
CUX1P39880 DNAH3-201ENST00000261383 12394 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
CUX1P39880 TEK-205ENST00000615002 4666 ntTSL 5 BASIC7.52□□□□□ -1.21
CUX1P39880 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC7.52□□□□□ -1.21
CUX1P39880 TLR5-205ENST00000540964 4088 ntAPPRIS P1 TSL 5 BASIC7.52□□□□□ -1.21
CUX1P39880 ANK2-201ENST00000264366 11775 ntAPPRIS ALT2 TSL 5 BASIC7.52□□□□□ -1.21
CUX1P39880 SREK1-203ENST00000380918 2433 ntTSL 1 (best) BASIC7.52□□□□□ -1.21
CUX1P39880 AL512634.1-201ENST00000566873 2432 ntTSL 1 (best) BASIC7.52□□□□□ -1.21
CUX1P39880 CCL7-202ENST00000394627 696 ntTSL 3 BASIC7.52□□□□□ -1.21
CUX1P39880 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC7.52□□□□□ -1.21
CUX1P39880 MFSD13B-201ENST00000420133 1290 ntBASIC7.52□□□□□ -1.21
CUX1P39880 RPL23AP38-201ENST00000423801 469 ntBASIC7.52□□□□□ -1.21
CUX1P39880 MOBP-206ENST00000428261 561 ntAPPRIS ALT2 TSL 4 BASIC7.52□□□□□ -1.21
CUX1P39880 PCBP1-AS1-224ENST00000429599 1045 ntTSL 5 BASIC7.52□□□□□ -1.21
CUX1P39880 AC000124.1-201ENST00000448311 957 ntTSL 2 BASIC7.52□□□□□ -1.21
CUX1P39880 AC245028.2-201ENST00000458673 253 ntBASIC7.52□□□□□ -1.21
CUX1P39880 AP001804.2-201ENST00000533932 910 ntBASIC7.52□□□□□ -1.21
CUX1P39880 AL161729.3-201ENST00000603533 673 ntBASIC7.52□□□□□ -1.21
CUX1P39880 CFAP61-201ENST00000245957 4082 ntAPPRIS P2 TSL 1 (best) BASIC7.52□□□□□ -1.21
CUX1P39880 AC099654.3-201ENST00000447087 1546 ntBASIC7.51□□□□□ -1.21
CUX1P39880 DDX18P5-201ENST00000534547 1306 ntBASIC7.51□□□□□ -1.21
CUX1P39880 AC092451.3-201ENST00000625067 1343 ntBASIC7.51□□□□□ -1.21
CUX1P39880 ELMO1-207ENST00000442504 3154 ntAPPRIS P1 TSL 2 BASIC7.51□□□□□ -1.21
CUX1P39880 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC7.51□□□□□ -1.21
CUX1P39880 MYBPC1-203ENST00000392934 3644 ntAPPRIS ALT2 TSL 2 BASIC7.51□□□□□ -1.21
CUX1P39880 ITGA1-201ENST00000282588 10757 ntAPPRIS P1 TSL 1 (best) BASIC7.51□□□□□ -1.21
CUX1P39880 RBM28-201ENST00000223073 15507 ntAPPRIS P1 TSL 1 (best) BASIC7.51□□□□□ -1.21
CUX1P39880 AC104260.2-201ENST00000623551 3497 ntBASIC7.51□□□□□ -1.21
CUX1P39880 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC7.51□□□□□ -1.21
CUX1P39880 RPL21P65-201ENST00000406094 466 ntBASIC7.51□□□□□ -1.21
CUX1P39880 SNORA11F-201ENST00000408237 128 ntBASIC7.51□□□□□ -1.21
CUX1P39880 AL354766.1-201ENST00000423396 542 ntBASIC7.51□□□□□ -1.21
CUX1P39880 AC009963.4-201ENST00000448535 339 ntBASIC7.51□□□□□ -1.21
CUX1P39880 AL049874.2-201ENST00000492636 288 ntBASIC7.51□□□□□ -1.21
CUX1P39880 CDRT1-208ENST00000630868 794 ntBASIC7.51□□□□□ -1.21
CUX1P39880 TPTE2-205ENST00000400230 1793 ntAPPRIS P1 TSL 5 BASIC7.51□□□□□ -1.21
CUX1P39880 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC7.51□□□□□ -1.21
CUX1P39880 ADAM24P-201ENST00000398655 2101 ntBASIC7.5□□□□□ -1.21
CUX1P39880 ANAPC1P1-201ENST00000426186 2145 ntBASIC7.5□□□□□ -1.21
CUX1P39880 ZNF611-201ENST00000319783 3153 ntAPPRIS P1 TSL 2 BASIC7.5□□□□□ -1.21
CUX1P39880 TBC1D5-201ENST00000253692 7854 ntAPPRIS P1 TSL 1 (best) BASIC7.5□□□□□ -1.21
CUX1P39880 HGF-202ENST00000354224 1425 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
CUX1P39880 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC7.5□□□□□ -1.21
CUX1P39880 ZNF518B-201ENST00000326756 6894 ntAPPRIS P1 TSL 3 BASIC7.5□□□□□ -1.21
CUX1P39880 CCR2-202ENST00000400888 2232 ntTSL 1 (best) BASIC7.5□□□□□ -1.21
CUX1P39880 PRRC1-201ENST00000296666 4699 ntAPPRIS P1 TSL 1 (best) BASIC7.5□□□□□ -1.21
CUX1P39880 CKAP5-210ENST00000529230 7121 ntAPPRIS P1 TSL 5 BASIC7.5□□□□□ -1.21
CUX1P39880 PCNPP4-201ENST00000414817 517 ntBASIC7.5□□□□□ -1.21
Retrieved 100 of 98,524 protein–RNA pairs in 71.4 ms