Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 OR8H1-201ENST00000313022 1038 ntAPPRIS P2 BASIC4.52□□□□□ -1.69
SDC1P18827 SPANXN1-201ENST00000370493 1276 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
SDC1P18827 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
SDC1P18827 AL590762.2-201ENST00000395798 571 ntBASIC4.52□□□□□ -1.69
SDC1P18827 DEFB113-201ENST00000398718 249 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
SDC1P18827 AC003975.1-201ENST00000411856 837 ntTSL 3 BASIC4.52□□□□□ -1.69
SDC1P18827 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC4.52□□□□□ -1.69
SDC1P18827 AC093162.1-201ENST00000419682 124 ntBASIC4.52□□□□□ -1.69
SDC1P18827 AC004415.1-201ENST00000422697 449 ntTSL 3 BASIC4.52□□□□□ -1.69
SDC1P18827 MTCO1P57-201ENST00000432182 261 ntBASIC4.52□□□□□ -1.69
SDC1P18827 TRIM60P13-201ENST00000432350 1283 ntBASIC4.52□□□□□ -1.69
SDC1P18827 CCRL1P1-201ENST00000449542 1053 ntBASIC4.52□□□□□ -1.69
SDC1P18827 MYO5BP2-201ENST00000449815 1277 ntBASIC4.52□□□□□ -1.69
SDC1P18827 MORF4L1P4-201ENST00000450245 976 ntBASIC4.52□□□□□ -1.69
SDC1P18827 AC010733.1-201ENST00000451515 401 ntBASIC4.52□□□□□ -1.69
SDC1P18827 AC087071.2-201ENST00000483283 575 ntTSL 4 BASIC4.52□□□□□ -1.69
SDC1P18827 ADGRL3-AS1-202ENST00000504135 542 ntTSL 5 BASIC4.52□□□□□ -1.69
SDC1P18827 AC011405.1-202ENST00000504658 803 ntTSL 3 BASIC4.52□□□□□ -1.69
SDC1P18827 AC097534.1-201ENST00000507803 521 ntTSL 4 BASIC4.52□□□□□ -1.69
SDC1P18827 AC096759.1-201ENST00000510744 473 ntTSL 3 BASIC4.52□□□□□ -1.69
SDC1P18827 AC090753.1-201ENST00000522087 331 ntTSL 3 BASIC4.52□□□□□ -1.69
SDC1P18827 MTERF3-205ENST00000524341 776 ntTSL 3 BASIC4.52□□□□□ -1.69
SDC1P18827 AC133555.2-201ENST00000550213 292 ntBASIC4.52□□□□□ -1.69
SDC1P18827 AC012464.2-201ENST00000551257 779 ntTSL 5 BASIC4.52□□□□□ -1.69
SDC1P18827 LINC01619-209ENST00000552277 571 ntTSL 4 BASIC4.52□□□□□ -1.69
SDC1P18827 AC016987.1-201ENST00000558587 499 ntTSL 2 BASIC4.52□□□□□ -1.69
SDC1P18827 AC093591.2-201ENST00000565254 3843 ntBASIC4.52□□□□□ -1.69
SDC1P18827 AC015912.2-201ENST00000571053 181 ntBASIC4.52□□□□□ -1.69
SDC1P18827 AC127540.1-201ENST00000580311 689 ntTSL 5 BASIC4.52□□□□□ -1.69
SDC1P18827 MIR6886-201ENST00000619864 61 ntBASIC4.52□□□□□ -1.69
SDC1P18827 AC074140.1-201ENST00000621617 208 ntBASIC4.52□□□□□ -1.69
SDC1P18827 AC112694.2-201ENST00000623697 768 ntBASIC4.52□□□□□ -1.69
SDC1P18827 DARS-AS1-230ENST00000631306 530 ntTSL 5 BASIC4.52□□□□□ -1.69
SDC1P18827 ACSL5-204ENST00000393081 3380 ntAPPRIS P1 TSL 5 BASIC4.52□□□□□ -1.69
SDC1P18827 FAM72A-201ENST00000341209 1774 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
SDC1P18827 HSPA8P18-201ENST00000439846 1928 ntBASIC4.52□□□□□ -1.69
SDC1P18827 OBSCN-214ENST00000636875 23907 ntTSL 5 BASIC4.52□□□□□ -1.69
SDC1P18827 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
SDC1P18827 C4BPAP1-201ENST00000415474 1893 ntBASIC4.52□□□□□ -1.69
SDC1P18827 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
SDC1P18827 EEF1A1P42-201ENST00000613436 1331 ntBASIC4.51□□□□□ -1.69
SDC1P18827 ZNF486-201ENST00000335117 3837 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
SDC1P18827 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
SDC1P18827 BANF2-202ENST00000377805 444 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
SDC1P18827 RNU6-1263P-201ENST00000384601 106 ntBASIC4.51□□□□□ -1.69
SDC1P18827 MIR137-201ENST00000385223 102 ntBASIC4.51□□□□□ -1.69
SDC1P18827 RNU1-82P-201ENST00000390851 165 ntBASIC4.51□□□□□ -1.69
SDC1P18827 MTND3P20-201ENST00000407663 186 ntBASIC4.51□□□□□ -1.69
SDC1P18827 SNORA79B-201ENST00000410557 148 ntBASIC4.51□□□□□ -1.69
SDC1P18827 OR51B3P-201ENST00000412287 913 ntBASIC4.51□□□□□ -1.69
SDC1P18827 AC079630.1-201ENST00000412812 585 ntTSL 4 BASIC4.51□□□□□ -1.69
SDC1P18827 AL512504.1-201ENST00000415494 778 ntBASIC4.51□□□□□ -1.69
SDC1P18827 Z74021.1-201ENST00000423610 407 ntBASIC4.51□□□□□ -1.69
SDC1P18827 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC4.51□□□□□ -1.69
SDC1P18827 AC008080.4-202ENST00000440034 1005 ntTSL 3 BASIC4.51□□□□□ -1.69
SDC1P18827 AC112498.1-201ENST00000444401 332 ntBASIC4.51□□□□□ -1.69
SDC1P18827 TRY2P-201ENST00000448860 689 ntBASIC4.51□□□□□ -1.69
SDC1P18827 LINC00704-203ENST00000449712 703 ntTSL 3 BASIC4.51□□□□□ -1.69
SDC1P18827 AURKAPS2-201ENST00000454983 333 ntBASIC4.51□□□□□ -1.69
SDC1P18827 HAX1-208ENST00000483970 1151 ntTSL 2 BASIC4.51□□□□□ -1.69
SDC1P18827 ATP6V1G1P6-201ENST00000504007 334 ntBASIC4.51□□□□□ -1.69
SDC1P18827 GAPDHP56-201ENST00000506031 988 ntBASIC4.51□□□□□ -1.69
SDC1P18827 AL133372.2-203ENST00000508469 922 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
SDC1P18827 AC091868.1-201ENST00000508746 304 ntBASIC4.51□□□□□ -1.69
SDC1P18827 LINC02472-201ENST00000512268 575 ntTSL 2 BASIC4.51□□□□□ -1.69
SDC1P18827 RNU6ATAC24P-201ENST00000516811 135 ntBASIC4.51□□□□□ -1.69
SDC1P18827 AC009446.1-202ENST00000521131 473 ntTSL 3 BASIC4.51□□□□□ -1.69
SDC1P18827 EIF4A2P3-201ENST00000525903 1055 ntBASIC4.51□□□□□ -1.69
SDC1P18827 AP003059.1-201ENST00000526206 432 ntTSL 5 BASIC4.51□□□□□ -1.69
SDC1P18827 OR7E10P-201ENST00000526420 991 ntBASIC4.51□□□□□ -1.69
SDC1P18827 AP000873.2-205ENST00000529031 435 ntTSL 2 BASIC4.51□□□□□ -1.69
SDC1P18827 MIR670HG-201ENST00000533531 897 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
SDC1P18827 LINC02168-201ENST00000565327 352 ntTSL 2 BASIC4.51□□□□□ -1.69
SDC1P18827 AC005154.1-213ENST00000578572 445 ntTSL 3 BASIC4.51□□□□□ -1.69
SDC1P18827 AC005229.3-201ENST00000603438 323 ntBASIC4.51□□□□□ -1.69
SDC1P18827 HMGB1P51-201ENST00000605166 638 ntBASIC4.51□□□□□ -1.69
SDC1P18827 AC073111.2-201ENST00000605657 1075 ntBASIC4.51□□□□□ -1.69
SDC1P18827 AC073575.2-201ENST00000614212 627 ntBASIC4.51□□□□□ -1.69
SDC1P18827 RMST_5.1-201ENST00000618704 126 ntBASIC4.51□□□□□ -1.69
SDC1P18827 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC4.51□□□□□ -1.69
SDC1P18827 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
SDC1P18827 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC4.51□□□□□ -1.69
SDC1P18827 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
SDC1P18827 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.51□□□□□ -1.69
SDC1P18827 MTRR-202ENST00000440940 3215 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
SDC1P18827 KIF23-206ENST00000558585 2296 ntTSL 2 BASIC4.51□□□□□ -1.69
SDC1P18827 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC4.51□□□□□ -1.69
SDC1P18827 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC4.51□□□□□ -1.69
SDC1P18827 NCLP2-201ENST00000416078 1462 ntBASIC4.5□□□□□ -1.69
SDC1P18827 EIF3H-209ENST00000521861 3959 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
SDC1P18827 AL136164.3-201ENST00000624429 3978 ntBASIC4.5□□□□□ -1.69
SDC1P18827 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
SDC1P18827 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC4.5□□□□□ -1.69
SDC1P18827 AL031119.1-201ENST00000404707 1879 ntBASIC4.5□□□□□ -1.69
SDC1P18827 SAMMSON-226ENST00000642089 1582 ntBASIC4.5□□□□□ -1.69
SDC1P18827 GTDC1-203ENST00000392867 2408 ntTSL 5 BASIC4.5□□□□□ -1.69
SDC1P18827 PLS1-211ENST00000497002 2258 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
SDC1P18827 RNA5SP305-201ENST00000362665 119 ntBASIC4.5□□□□□ -1.69
SDC1P18827 SNORA51.1-201ENST00000363243 140 ntBASIC4.5□□□□□ -1.69
SDC1P18827 CHMP1B2P-201ENST00000399581 597 ntBASIC4.5□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 76.3 ms