Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC6.93□□□□□ -1.3
CCDC39Q9UFE4 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC6.93□□□□□ -1.3
CCDC39Q9UFE4 AC137590.1-201ENST00000542422 495 ntTSL 3 BASIC6.93□□□□□ -1.3
CCDC39Q9UFE4 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC6.93□□□□□ -1.3
CCDC39Q9UFE4 AC034102.2-201ENST00000548861 489 ntAPPRIS P1 TSL 5 BASIC6.93□□□□□ -1.3
CCDC39Q9UFE4 AL138974.1-201ENST00000551227 741 ntTSL 5 BASIC6.93□□□□□ -1.3
CCDC39Q9UFE4 AC025265.2-201ENST00000551905 478 ntTSL 3 BASIC6.93□□□□□ -1.3
CCDC39Q9UFE4 TSSK4-207ENST00000556621 896 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
CCDC39Q9UFE4 AC025918.2-201ENST00000558683 763 ntBASIC6.93□□□□□ -1.3
CCDC39Q9UFE4 AC087465.1-201ENST00000560574 245 ntBASIC6.93□□□□□ -1.3
CCDC39Q9UFE4 MT1CP-201ENST00000567054 174 ntBASIC6.93□□□□□ -1.3
CCDC39Q9UFE4 AC079171.1-201ENST00000568788 914 ntBASIC6.93□□□□□ -1.3
CCDC39Q9UFE4 TTC39C-AS1-201ENST00000579713 817 ntTSL 5 BASIC6.93□□□□□ -1.3
CCDC39Q9UFE4 AC134669.1-201ENST00000581275 672 ntBASIC6.93□□□□□ -1.3
CCDC39Q9UFE4 AP001269.3-201ENST00000588718 329 ntBASIC6.93□□□□□ -1.3
CCDC39Q9UFE4 AC044792.1-201ENST00000593294 196 ntBASIC6.93□□□□□ -1.3
CCDC39Q9UFE4 AC125494.2-201ENST00000602431 657 ntBASIC6.93□□□□□ -1.3
CCDC39Q9UFE4 AP001823.1-201ENST00000604056 1003 ntBASIC6.93□□□□□ -1.3
CCDC39Q9UFE4 AC008555.7-201ENST00000605008 583 ntBASIC6.93□□□□□ -1.3
CCDC39Q9UFE4 AC128687.1-201ENST00000605304 619 ntBASIC6.93□□□□□ -1.3
CCDC39Q9UFE4 AL024498.1-201ENST00000606522 1100 ntTSL 3 BASIC6.93□□□□□ -1.3
CCDC39Q9UFE4 AC004223.4-201ENST00000612426 332 ntBASIC6.93□□□□□ -1.3
CCDC39Q9UFE4 AC244205.1-201ENST00000624935 705 ntTSL 2 BASIC6.93□□□□□ -1.3
CCDC39Q9UFE4 AL139220.2-221ENST00000628123 395 ntTSL 5 BASIC6.93□□□□□ -1.3
CCDC39Q9UFE4 AC099654.12-201ENST00000639868 649 ntBASIC6.93□□□□□ -1.3
CCDC39Q9UFE4 ZNF33A-202ENST00000374618 6122 ntTSL 4 BASIC6.93□□□□□ -1.3
CCDC39Q9UFE4 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC6.93□□□□□ -1.3
CCDC39Q9UFE4 MAP2-205ENST00000392194 5303 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
CCDC39Q9UFE4 CASC15-206ENST00000606851 1889 ntTSL 2 BASIC6.93□□□□□ -1.3
CCDC39Q9UFE4 DYNC2LI1-210ENST00000605786 1346 ntAPPRIS ALT1 TSL 1 (best) BASIC6.93□□□□□ -1.3
CCDC39Q9UFE4 SATB1-209ENST00000454909 3755 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
CCDC39Q9UFE4 DYNC1I2-202ENST00000397119 2604 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
CCDC39Q9UFE4 AC011416.1-201ENST00000514947 1732 ntBASIC6.93□□□□□ -1.3
CCDC39Q9UFE4 SLC7A11-201ENST00000280612 9645 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
CCDC39Q9UFE4 ESRRG-219ENST00000487276 3015 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
CCDC39Q9UFE4 ZNF81-202ENST00000338637 7859 ntAPPRIS P1 TSL 3 BASIC6.92□□□□□ -1.3
CCDC39Q9UFE4 LINC01676-202ENST00000435253 1849 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
CCDC39Q9UFE4 SGO1-202ENST00000306698 1531 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
CCDC39Q9UFE4 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
CCDC39Q9UFE4 IKZF3-213ENST00000439167 1879 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
CCDC39Q9UFE4 CERS3-203ENST00000538112 1856 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
CCDC39Q9UFE4 LGI1-212ENST00000630184 2936 ntTSL 2 BASIC6.92□□□□□ -1.3
CCDC39Q9UFE4 SMG1-201ENST00000330588 1588 ntTSL 5 BASIC6.92□□□□□ -1.3
CCDC39Q9UFE4 HSPD1P9-201ENST00000420325 1636 ntBASIC6.92□□□□□ -1.3
CCDC39Q9UFE4 ALKAL2-201ENST00000344414 449 ntTSL 3 BASIC6.92□□□□□ -1.3
CCDC39Q9UFE4 SNORA72.1-201ENST00000363485 129 ntBASIC6.92□□□□□ -1.3
CCDC39Q9UFE4 RNU4-51P-201ENST00000364206 140 ntBASIC6.92□□□□□ -1.3
CCDC39Q9UFE4 SNORD116.1-201ENST00000365628 92 ntBASIC6.92□□□□□ -1.3
CCDC39Q9UFE4 G6PC2-202ENST00000375363 1214 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
CCDC39Q9UFE4 RNU6-224P-201ENST00000384055 107 ntBASIC6.92□□□□□ -1.3
CCDC39Q9UFE4 Y_RNA.578-201ENST00000390903 88 ntBASIC6.92□□□□□ -1.3
CCDC39Q9UFE4 RPL34-203ENST00000394668 853 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
CCDC39Q9UFE4 C2orf88-202ENST00000396974 998 ntAPPRIS P1 TSL 2 BASIC6.92□□□□□ -1.3
CCDC39Q9UFE4 RPL7P27-201ENST00000403775 720 ntBASIC6.92□□□□□ -1.3
CCDC39Q9UFE4 AC007899.1-201ENST00000412776 775 ntBASIC6.92□□□□□ -1.3
CCDC39Q9UFE4 AC104651.1-201ENST00000427559 735 ntBASIC6.92□□□□□ -1.3
CCDC39Q9UFE4 KCTD9P1-201ENST00000430462 1167 ntBASIC6.92□□□□□ -1.3
CCDC39Q9UFE4 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC6.92□□□□□ -1.3
CCDC39Q9UFE4 LINC02522-201ENST00000431401 256 ntTSL 3 BASIC6.92□□□□□ -1.3
CCDC39Q9UFE4 AL589935.1-218ENST00000434683 529 ntTSL 3 BASIC6.92□□□□□ -1.3
CCDC39Q9UFE4 YWHAZP7-201ENST00000436906 631 ntBASIC6.92□□□□□ -1.3
CCDC39Q9UFE4 RPSAP40-201ENST00000442343 891 ntBASIC6.92□□□□□ -1.3
CCDC39Q9UFE4 HMGB3P6-201ENST00000444896 598 ntBASIC6.92□□□□□ -1.3
CCDC39Q9UFE4 AC023271.1-201ENST00000445936 1090 ntBASIC6.92□□□□□ -1.3
CCDC39Q9UFE4 CASP3P1-201ENST00000446037 609 ntBASIC6.92□□□□□ -1.3
CCDC39Q9UFE4 EEF1E1P1-201ENST00000446998 430 ntBASIC6.92□□□□□ -1.3
CCDC39Q9UFE4 MACROD2-IT1-201ENST00000448536 665 ntTSL 5 BASIC6.92□□□□□ -1.3
CCDC39Q9UFE4 RPS4XP6-201ENST00000477670 797 ntBASIC6.92□□□□□ -1.3
CCDC39Q9UFE4 RPL34P33-201ENST00000486062 334 ntBASIC6.92□□□□□ -1.3
CCDC39Q9UFE4 AC093752.1-212ENST00000500559 453 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
CCDC39Q9UFE4 AC138409.2-202ENST00000507274 458 ntBASIC6.92□□□□□ -1.3
CCDC39Q9UFE4 HMGN1P16-201ENST00000508308 283 ntBASIC6.92□□□□□ -1.3
CCDC39Q9UFE4 LINC02512-201ENST00000509548 429 ntTSL 5 BASIC6.92□□□□□ -1.3
CCDC39Q9UFE4 AC115622.1-201ENST00000509628 587 ntTSL 3 BASIC6.92□□□□□ -1.3
CCDC39Q9UFE4 LINC02485-202ENST00000511899 770 ntTSL 3 BASIC6.92□□□□□ -1.3
CCDC39Q9UFE4 TET2-AS1-201ENST00000515414 537 ntTSL 5 BASIC6.92□□□□□ -1.3
CCDC39Q9UFE4 RNU6-507P-201ENST00000516045 100 ntBASIC6.92□□□□□ -1.3
CCDC39Q9UFE4 TPT1-AS1-206ENST00000519454 709 ntTSL 5 BASIC6.92□□□□□ -1.3
CCDC39Q9UFE4 AC134043.1-201ENST00000521204 638 ntTSL 3 BASIC6.92□□□□□ -1.3
CCDC39Q9UFE4 AC113386.1-201ENST00000523584 381 ntTSL 5 BASIC6.92□□□□□ -1.3
CCDC39Q9UFE4 MED28P5-201ENST00000528254 438 ntBASIC6.92□□□□□ -1.3
CCDC39Q9UFE4 ST3GAL3-232ENST00000531451 420 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
CCDC39Q9UFE4 AC068643.2-201ENST00000547418 852 ntTSL 5 BASIC6.92□□□□□ -1.3
CCDC39Q9UFE4 GS1-279B7.1-203ENST00000565520 609 ntTSL 5 BASIC6.92□□□□□ -1.3
CCDC39Q9UFE4 AC019322.1-201ENST00000571869 389 ntBASIC6.92□□□□□ -1.3
CCDC39Q9UFE4 AC211486.2-201ENST00000576046 280 ntTSL 3 BASIC6.92□□□□□ -1.3
CCDC39Q9UFE4 AC022662.1-201ENST00000580252 331 ntBASIC6.92□□□□□ -1.3
CCDC39Q9UFE4 AP005120.1-202ENST00000584321 506 ntTSL 4 BASIC6.92□□□□□ -1.3
CCDC39Q9UFE4 AL132655.1-201ENST00000601795 1153 ntTSL 3 BASIC6.92□□□□□ -1.3
CCDC39Q9UFE4 FBXW7-AS1-201ENST00000605147 372 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
CCDC39Q9UFE4 SMAGP-208ENST00000605627 577 ntTSL 5 BASIC6.92□□□□□ -1.3
CCDC39Q9UFE4 RPSAP75-201ENST00000605848 301 ntBASIC6.92□□□□□ -1.3
CCDC39Q9UFE4 AC008280.3-201ENST00000606436 732 ntTSL 5 BASIC6.92□□□□□ -1.3
CCDC39Q9UFE4 AC141002.1-201ENST00000607025 279 ntBASIC6.92□□□□□ -1.3
CCDC39Q9UFE4 AC015819.1-201ENST00000613588 663 ntBASIC6.92□□□□□ -1.3
CCDC39Q9UFE4 Metazoa_SRP.199-201ENST00000615501 281 ntBASIC6.92□□□□□ -1.3
CCDC39Q9UFE4 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC6.92□□□□□ -1.3
CCDC39Q9UFE4 MIR6823-201ENST00000622118 61 ntBASIC6.92□□□□□ -1.3
CCDC39Q9UFE4 AC090617.9-201ENST00000623751 147 ntBASIC6.92□□□□□ -1.3
CCDC39Q9UFE4 PRLR-201ENST00000231423 1679 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 75.4 ms