Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 MAP3K19-201ENST00000358371 3719 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
FOXF1Q12946 AP001273.1-201ENST00000624493 3152 ntBASIC4.26□□□□□ -1.73
FOXF1Q12946 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
FOXF1Q12946 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
FOXF1Q12946 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
FOXF1Q12946 DAZ4-207ENST00000634662 1832 ntAPPRIS ALT2 TSL 5 BASIC4.25□□□□□ -1.73
FOXF1Q12946 SALL4P2-201ENST00000423288 2910 ntBASIC4.25□□□□□ -1.73
FOXF1Q12946 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC4.25□□□□□ -1.73
FOXF1Q12946 DHX9P1-201ENST00000436565 3076 ntBASIC4.25□□□□□ -1.73
FOXF1Q12946 OSBPL11-201ENST00000296220 4191 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
FOXF1Q12946 OBSCN-214ENST00000636875 23907 ntTSL 5 BASIC4.25□□□□□ -1.73
FOXF1Q12946 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
FOXF1Q12946 CALU-203ENST00000479257 2572 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
FOXF1Q12946 DTNA-229ENST00000598142 2509 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
FOXF1Q12946 CLEC7A-203ENST00000310002 425 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
FOXF1Q12946 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
FOXF1Q12946 OR51I1-201ENST00000380211 945 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
FOXF1Q12946 OR51B3P-201ENST00000412287 913 ntBASIC4.25□□□□□ -1.73
FOXF1Q12946 FTLP19-201ENST00000433300 394 ntBASIC4.25□□□□□ -1.73
FOXF1Q12946 RPL36AP15-201ENST00000444514 266 ntBASIC4.25□□□□□ -1.73
FOXF1Q12946 H2AFZP5-201ENST00000446960 382 ntBASIC4.25□□□□□ -1.73
FOXF1Q12946 AL355870.1-201ENST00000448272 454 ntTSL 3 BASIC4.25□□□□□ -1.73
FOXF1Q12946 AC011005.3-201ENST00000491624 395 ntBASIC4.25□□□□□ -1.73
FOXF1Q12946 GOLGA5P1-201ENST00000507317 980 ntBASIC4.25□□□□□ -1.73
FOXF1Q12946 AL671862.1-201ENST00000515851 349 ntBASIC4.25□□□□□ -1.73
FOXF1Q12946 MAL2-201ENST00000522112 573 ntTSL 4 BASIC4.25□□□□□ -1.73
FOXF1Q12946 OR5M11-201ENST00000528616 1020 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
FOXF1Q12946 MS4A7-208ENST00000530234 730 ntTSL 3 BASIC4.25□□□□□ -1.73
FOXF1Q12946 AP002765.2-201ENST00000532961 666 ntTSL 3 BASIC4.25□□□□□ -1.73
FOXF1Q12946 AC125612.1-201ENST00000547580 377 ntBASIC4.25□□□□□ -1.73
FOXF1Q12946 AC104984.1-201ENST00000581633 697 ntTSL 3 BASIC4.25□□□□□ -1.73
FOXF1Q12946 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC4.25□□□□□ -1.73
FOXF1Q12946 AC004160.1-202ENST00000599917 578 ntTSL 5 BASIC4.25□□□□□ -1.73
FOXF1Q12946 MIR4527HG-203ENST00000600127 704 ntTSL 5 BASIC4.25□□□□□ -1.73
FOXF1Q12946 AC005162.3-202ENST00000609495 483 ntTSL 5 BASIC4.25□□□□□ -1.73
FOXF1Q12946 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
FOXF1Q12946 AL672167.1-205ENST00000641112 3080 ntBASIC4.25□□□□□ -1.73
FOXF1Q12946 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC4.25□□□□□ -1.73
FOXF1Q12946 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC4.25□□□□□ -1.73
FOXF1Q12946 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC4.25□□□□□ -1.73
FOXF1Q12946 ANAPC1P1-201ENST00000426186 2145 ntBASIC4.25□□□□□ -1.73
FOXF1Q12946 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
FOXF1Q12946 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC4.25□□□□□ -1.73
FOXF1Q12946 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC4.25□□□□□ -1.73
FOXF1Q12946 PAN3-202ENST00000399613 4940 ntAPPRIS ALT2 TSL 5 BASIC4.25□□□□□ -1.73
FOXF1Q12946 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
FOXF1Q12946 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
FOXF1Q12946 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC4.24□□□□□ -1.73
FOXF1Q12946 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
FOXF1Q12946 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC4.24□□□□□ -1.73
FOXF1Q12946 AL031119.1-201ENST00000404707 1879 ntBASIC4.24□□□□□ -1.73
FOXF1Q12946 TCF4-290ENST00000638154 7801 ntAPPRIS ALT1 TSL 5 BASIC4.24□□□□□ -1.73
FOXF1Q12946 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC4.24□□□□□ -1.73
FOXF1Q12946 AC126323.6-202ENST00000568092 3511 ntBASIC4.24□□□□□ -1.73
FOXF1Q12946 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC4.24□□□□□ -1.73
FOXF1Q12946 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
FOXF1Q12946 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC4.24□□□□□ -1.73
FOXF1Q12946 PSMA4-201ENST00000044462 4411 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
FOXF1Q12946 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC4.24□□□□□ -1.73
FOXF1Q12946 LDHC-201ENST00000280704 1256 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
FOXF1Q12946 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
FOXF1Q12946 RRM2B-203ENST00000395912 900 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
FOXF1Q12946 RN7SKP267-201ENST00000410381 285 ntBASIC4.24□□□□□ -1.73
FOXF1Q12946 ATG4AP1-201ENST00000416893 538 ntBASIC4.24□□□□□ -1.73
FOXF1Q12946 AC140479.3-201ENST00000418944 1126 ntBASIC4.24□□□□□ -1.73
FOXF1Q12946 AL590723.1-201ENST00000426030 629 ntTSL 5 BASIC4.24□□□□□ -1.73
FOXF1Q12946 AC090505.2-201ENST00000427064 464 ntTSL 3 BASIC4.24□□□□□ -1.73
FOXF1Q12946 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC4.24□□□□□ -1.73
FOXF1Q12946 AC099654.1-201ENST00000442649 407 ntTSL 3 BASIC4.24□□□□□ -1.73
FOXF1Q12946 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC4.24□□□□□ -1.73
FOXF1Q12946 Z80107.2-201ENST00000445127 392 ntBASIC4.24□□□□□ -1.73
FOXF1Q12946 AP003774.4-201ENST00000447028 672 ntTSL 2 BASIC4.24□□□□□ -1.73
FOXF1Q12946 AC104651.2-201ENST00000447549 528 ntBASIC4.24□□□□□ -1.73
FOXF1Q12946 AC108463.1-201ENST00000450258 347 ntBASIC4.24□□□□□ -1.73
FOXF1Q12946 RPL36AP41-201ENST00000493820 306 ntBASIC4.24□□□□□ -1.73
FOXF1Q12946 LINC02492-201ENST00000502952 564 ntTSL 5 BASIC4.24□□□□□ -1.73
FOXF1Q12946 ENSA-211ENST00000503345 793 ntTSL 3 BASIC4.24□□□□□ -1.73
FOXF1Q12946 THUMPD3-AS1-215ENST00000521609 793 ntTSL 5 BASIC4.24□□□□□ -1.73
FOXF1Q12946 OR5M2P-201ENST00000529003 936 ntBASIC4.24□□□□□ -1.73
FOXF1Q12946 MIR4270-201ENST00000581799 70 ntBASIC4.24□□□□□ -1.73
FOXF1Q12946 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC4.24□□□□□ -1.73
FOXF1Q12946 RPL27-207ENST00000590864 569 ntTSL 2 BASIC4.24□□□□□ -1.73
FOXF1Q12946 AL353600.1-201ENST00000608148 251 ntBASIC4.24□□□□□ -1.73
FOXF1Q12946 MIR8069-1-201ENST00000616627 86 ntBASIC4.24□□□□□ -1.73
FOXF1Q12946 ZNF479-203ENST00000620639 1239 ntTSL 5 BASIC4.24□□□□□ -1.73
FOXF1Q12946 MIR8069-2-201ENST00000621412 86 ntBASIC4.24□□□□□ -1.73
FOXF1Q12946 AL359757.1-201ENST00000623176 255 ntBASIC4.24□□□□□ -1.73
FOXF1Q12946 AC048338.2-201ENST00000623601 684 ntTSL 5 BASIC4.24□□□□□ -1.73
FOXF1Q12946 SATB1-AS1-263ENST00000630022 622 ntTSL 5 BASIC4.24□□□□□ -1.73
FOXF1Q12946 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC4.24□□□□□ -1.73
FOXF1Q12946 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
FOXF1Q12946 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC4.24□□□□□ -1.73
FOXF1Q12946 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC4.24□□□□□ -1.73
FOXF1Q12946 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC4.24□□□□□ -1.73
FOXF1Q12946 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
FOXF1Q12946 A2MP1-204ENST00000566278 4130 ntBASIC4.23□□□□□ -1.73
FOXF1Q12946 LINC02227-201ENST00000619068 3748 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
FOXF1Q12946 MAPK10-236ENST00000638313 3971 ntTSL 5 BASIC4.23□□□□□ -1.73
FOXF1Q12946 C2orf66-201ENST00000342506 1669 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
FOXF1Q12946 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC4.23□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 75.2 ms