Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.65□□□□□ -1.66
HOXD4P09016 TNRC6B-206ENST00000454349 18279 ntAPPRIS ALT2 TSL 2 BASIC4.65□□□□□ -1.66
HOXD4P09016 AC100757.1-201ENST00000616872 1835 ntBASIC4.65□□□□□ -1.66
HOXD4P09016 DAZ4-207ENST00000634662 1832 ntAPPRIS ALT2 TSL 5 BASIC4.65□□□□□ -1.66
HOXD4P09016 DNAH14-208ENST00000430092 13763 ntAPPRIS P1 TSL 5 BASIC4.65□□□□□ -1.66
HOXD4P09016 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
HOXD4P09016 AL592182.3-201ENST00000642132 3304 ntBASIC4.65□□□□□ -1.66
HOXD4P09016 HTR1F-201ENST00000319595 3140 ntAPPRIS P1 BASIC4.65□□□□□ -1.66
HOXD4P09016 DAZ1-206ENST00000620725 1891 ntTSL 5 BASIC4.65□□□□□ -1.66
HOXD4P09016 RNF145-201ENST00000274542 3364 ntTSL 2 BASIC4.65□□□□□ -1.66
HOXD4P09016 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
HOXD4P09016 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC4.65□□□□□ -1.66
HOXD4P09016 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC4.65□□□□□ -1.67
HOXD4P09016 MGP-201ENST00000228938 694 ntTSL 3 BASIC4.65□□□□□ -1.67
HOXD4P09016 AC010132.2-201ENST00000295493 1043 ntBASIC4.65□□□□□ -1.67
HOXD4P09016 SSMEM1-201ENST00000297819 1159 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
HOXD4P09016 SPRR2E-202ENST00000368751 692 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
HOXD4P09016 PRKACB-203ENST00000370684 869 ntTSL 5 BASIC4.65□□□□□ -1.67
HOXD4P09016 RNU1-74P-201ENST00000384108 171 ntBASIC4.65□□□□□ -1.67
HOXD4P09016 SNORA48.4-201ENST00000391089 134 ntBASIC4.65□□□□□ -1.67
HOXD4P09016 AC096559.1-201ENST00000414086 399 ntTSL 2 BASIC4.65□□□□□ -1.67
HOXD4P09016 CYCSP10-201ENST00000417973 294 ntBASIC4.65□□□□□ -1.67
HOXD4P09016 AL390036.1-201ENST00000419428 734 ntTSL 5 BASIC4.65□□□□□ -1.67
HOXD4P09016 SETP10-201ENST00000424368 814 ntBASIC4.65□□□□□ -1.67
HOXD4P09016 IL23R-203ENST00000425614 1295 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
HOXD4P09016 AC068481.1-202ENST00000428379 555 ntTSL 4 BASIC4.65□□□□□ -1.67
HOXD4P09016 MAPRE1P3-201ENST00000435438 796 ntBASIC4.65□□□□□ -1.67
HOXD4P09016 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC4.65□□□□□ -1.67
HOXD4P09016 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC4.65□□□□□ -1.67
HOXD4P09016 DARS-AS1-206ENST00000446492 488 ntTSL 3 BASIC4.65□□□□□ -1.67
HOXD4P09016 AC048351.1-202ENST00000449483 735 ntTSL 3 BASIC4.65□□□□□ -1.67
HOXD4P09016 TPT1P13-201ENST00000449760 499 ntBASIC4.65□□□□□ -1.67
HOXD4P09016 AC009220.1-201ENST00000451614 275 ntBASIC4.65□□□□□ -1.67
HOXD4P09016 AC092647.2-201ENST00000452998 253 ntBASIC4.65□□□□□ -1.67
HOXD4P09016 LINC01014-203ENST00000455307 548 ntTSL 2 BASIC4.65□□□□□ -1.67
HOXD4P09016 AL356390.1-201ENST00000455684 397 ntBASIC4.65□□□□□ -1.67
HOXD4P09016 AC093827.1-201ENST00000480094 861 ntBASIC4.65□□□□□ -1.67
HOXD4P09016 AC098583.1-201ENST00000480875 255 ntBASIC4.65□□□□□ -1.67
HOXD4P09016 AC097534.1-201ENST00000507803 521 ntTSL 4 BASIC4.65□□□□□ -1.67
HOXD4P09016 AC090541.1-201ENST00000519803 467 ntTSL 3 BASIC4.65□□□□□ -1.67
HOXD4P09016 AC092709.1-201ENST00000521355 1045 ntBASIC4.65□□□□□ -1.67
HOXD4P09016 AC124067.3-201ENST00000522643 847 ntTSL 3 BASIC4.65□□□□□ -1.67
HOXD4P09016 AC022882.1-201ENST00000532142 501 ntBASIC4.65□□□□□ -1.67
HOXD4P09016 AC007406.1-201ENST00000544067 315 ntTSL 3 BASIC4.65□□□□□ -1.67
HOXD4P09016 PDCD6IPP2-207ENST00000566321 1069 ntBASIC4.65□□□□□ -1.67
HOXD4P09016 DIAPH2-AS1-204ENST00000579945 974 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
HOXD4P09016 AC007922.3-201ENST00000581648 543 ntTSL 3 BASIC4.65□□□□□ -1.67
HOXD4P09016 AC006504.5-202ENST00000586784 656 ntTSL 2 BASIC4.65□□□□□ -1.67
HOXD4P09016 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC4.65□□□□□ -1.67
HOXD4P09016 AC092474.3-201ENST00000603022 568 ntBASIC4.65□□□□□ -1.67
HOXD4P09016 AC005972.3-201ENST00000606304 481 ntBASIC4.65□□□□□ -1.67
HOXD4P09016 AC092953.2-201ENST00000608000 699 ntBASIC4.65□□□□□ -1.67
HOXD4P09016 AC112694.2-201ENST00000623697 768 ntBASIC4.65□□□□□ -1.67
HOXD4P09016 ARHGAP18-201ENST00000368149 4462 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
HOXD4P09016 ALB-214ENST00000509063 1911 ntTSL 5 BASIC4.65□□□□□ -1.67
HOXD4P09016 AC026523.2-201ENST00000625039 7739 ntBASIC4.65□□□□□ -1.67
HOXD4P09016 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
HOXD4P09016 LMNTD1-207ENST00000539744 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC4.65□□□□□ -1.67
HOXD4P09016 SMNDC1-202ENST00000369603 4341 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
HOXD4P09016 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC4.65□□□□□ -1.67
HOXD4P09016 OR2L5-201ENST00000355281 2429 ntAPPRIS P1 BASIC4.65□□□□□ -1.67
HOXD4P09016 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC4.65□□□□□ -1.67
HOXD4P09016 ZBTB38-201ENST00000321464 3588 ntAPPRIS P1 BASIC4.65□□□□□ -1.67
HOXD4P09016 KCNJ16-204ENST00000585558 4014 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
HOXD4P09016 ERVW-1-201ENST00000493463 2925 ntAPPRIS P1 BASIC4.65□□□□□ -1.67
HOXD4P09016 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
HOXD4P09016 LDHAL6CP-202ENST00000550738 3224 ntBASIC4.65□□□□□ -1.67
HOXD4P09016 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
HOXD4P09016 Z94721.2-201ENST00000609590 5310 ntTSL 2 BASIC4.65□□□□□ -1.67
HOXD4P09016 MTERF1-202ENST00000406735 1639 ntAPPRIS ALT2 TSL 2 BASIC4.64□□□□□ -1.67
HOXD4P09016 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC4.64□□□□□ -1.67
HOXD4P09016 GPALPP1-201ENST00000357537 5368 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
HOXD4P09016 EPS8-209ENST00000542903 1858 ntTSL 2 BASIC4.64□□□□□ -1.67
HOXD4P09016 PDCD1LG2-201ENST00000397747 2365 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
HOXD4P09016 PMCHL1-201ENST00000418902 1917 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
HOXD4P09016 LINC01520-201ENST00000441457 1487 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
HOXD4P09016 ZBTB8A-202ENST00000373510 7075 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
HOXD4P09016 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
HOXD4P09016 CYP3A43-201ENST00000222382 1515 ntAPPRIS P4 TSL 1 (best) BASIC4.64□□□□□ -1.67
HOXD4P09016 SLC13A1-201ENST00000194130 3815 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
HOXD4P09016 PIH1D2-201ENST00000280350 1241 ntAPPRIS P1 TSL 5 BASIC4.64□□□□□ -1.67
HOXD4P09016 OR2M7-201ENST00000317965 939 ntAPPRIS P1 BASIC4.64□□□□□ -1.67
HOXD4P09016 RN7SKP113-201ENST00000363891 295 ntBASIC4.64□□□□□ -1.67
HOXD4P09016 DEFB136-201ENST00000382209 237 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
HOXD4P09016 MIR141-201ENST00000384975 95 ntBASIC4.64□□□□□ -1.67
HOXD4P09016 CYB5AP4-201ENST00000396692 399 ntBASIC4.64□□□□□ -1.67
HOXD4P09016 VDAC2P1-201ENST00000399358 958 ntBASIC4.64□□□□□ -1.67
HOXD4P09016 AL607077.1-201ENST00000401718 499 ntBASIC4.64□□□□□ -1.67
HOXD4P09016 IL6-206ENST00000407492 926 ntTSL 3 BASIC4.64□□□□□ -1.67
HOXD4P09016 KCNJ13-203ENST00000410029 1177 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
HOXD4P09016 SEPT7P8-201ENST00000413308 775 ntBASIC4.64□□□□□ -1.67
HOXD4P09016 TRBV29-1-201ENST00000422143 402 ntAPPRIS P1 BASIC4.64□□□□□ -1.67
HOXD4P09016 AL356806.1-201ENST00000422524 916 ntBASIC4.64□□□□□ -1.67
HOXD4P09016 AC104333.2-201ENST00000422630 192 ntBASIC4.64□□□□□ -1.67
HOXD4P09016 AL590723.1-201ENST00000426030 629 ntTSL 5 BASIC4.64□□□□□ -1.67
HOXD4P09016 AC092920.1-201ENST00000428516 678 ntTSL 5 BASIC4.64□□□□□ -1.67
HOXD4P09016 PIH1D2-202ENST00000431456 1245 ntTSL 5 BASIC4.64□□□□□ -1.67
HOXD4P09016 RPL21P133-201ENST00000443666 476 ntBASIC4.64□□□□□ -1.67
HOXD4P09016 TRY2P-201ENST00000448860 689 ntBASIC4.64□□□□□ -1.67
HOXD4P09016 AL035409.1-201ENST00000454305 497 ntTSL 2 BASIC4.64□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 84.1 ms