Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 ATF2-201ENST00000264110 4176 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
VPS4AQ9UN37 AC103740.1-201ENST00000558888 7427 ntTSL 2 BASIC5.43□□□□□ -1.54
VPS4AQ9UN37 IKZF2-207ENST00000434687 3888 ntAPPRIS P2 TSL 5 BASIC5.43□□□□□ -1.54
VPS4AQ9UN37 AL158064.2-203ENST00000639897 2003 ntTSL 5 BASIC5.43□□□□□ -1.54
VPS4AQ9UN37 AL132640.2-201ENST00000559968 1698 ntBASIC5.43□□□□□ -1.54
VPS4AQ9UN37 TESPA1-203ENST00000524622 4188 ntAPPRIS ALT2 TSL 1 (best) BASIC5.43□□□□□ -1.54
VPS4AQ9UN37 PCDH15-207ENST00000395430 7002 ntTSL 5 BASIC5.43□□□□□ -1.54
VPS4AQ9UN37 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC5.43□□□□□ -1.54
VPS4AQ9UN37 AC011912.1-201ENST00000623483 5819 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
VPS4AQ9UN37 PCF11-AS1-201ENST00000602322 1516 ntBASIC5.43□□□□□ -1.54
VPS4AQ9UN37 PHC3-217ENST00000497658 2087 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
VPS4AQ9UN37 ESRRG-204ENST00000361525 5363 ntAPPRIS P1 TSL 5 BASIC5.42□□□□□ -1.54
VPS4AQ9UN37 AL031595.2-201ENST00000624215 19071 ntBASIC5.42□□□□□ -1.54
VPS4AQ9UN37 AC017007.4-201ENST00000503353 1352 ntBASIC5.42□□□□□ -1.54
VPS4AQ9UN37 CASC19-248ENST00000641674 1356 ntBASIC5.42□□□□□ -1.54
VPS4AQ9UN37 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC5.42□□□□□ -1.54
VPS4AQ9UN37 DSPP-201ENST00000282478 4281 ntAPPRIS P1 TSL 5 BASIC5.42□□□□□ -1.54
VPS4AQ9UN37 FIRRE-202ENST00000637577 1635 ntTSL 5 BASIC5.42□□□□□ -1.54
VPS4AQ9UN37 PCAT14-202ENST00000627127 3935 ntBASIC5.42□□□□□ -1.54
VPS4AQ9UN37 FAM19A1-201ENST00000478136 2014 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
VPS4AQ9UN37 KBTBD3-201ENST00000526793 3751 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
VPS4AQ9UN37 DEFB118-201ENST00000253381 1158 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
VPS4AQ9UN37 OR51B6-201ENST00000380219 939 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
VPS4AQ9UN37 ATP5HP3-201ENST00000396994 486 ntBASIC5.42□□□□□ -1.54
VPS4AQ9UN37 HMGB1P20-201ENST00000402555 677 ntBASIC5.42□□□□□ -1.54
VPS4AQ9UN37 BTBD9-203ENST00000403056 1155 ntTSL 5 BASIC5.42□□□□□ -1.54
VPS4AQ9UN37 RPL37P18-201ENST00000411602 243 ntBASIC5.42□□□□□ -1.54
VPS4AQ9UN37 AC010385.1-201ENST00000412374 256 ntBASIC5.42□□□□□ -1.54
VPS4AQ9UN37 AC023128.2-201ENST00000420880 1223 ntBASIC5.42□□□□□ -1.54
VPS4AQ9UN37 RPS27AP6-201ENST00000427962 448 ntBASIC5.42□□□□□ -1.54
VPS4AQ9UN37 FTLP19-201ENST00000433300 394 ntBASIC5.42□□□□□ -1.54
VPS4AQ9UN37 AC093716.1-201ENST00000435923 377 ntBASIC5.42□□□□□ -1.54
VPS4AQ9UN37 MTCYBP11-201ENST00000447254 1109 ntBASIC5.42□□□□□ -1.54
VPS4AQ9UN37 RPS23P9-201ENST00000448848 438 ntBASIC5.42□□□□□ -1.54
VPS4AQ9UN37 AL137005.1-201ENST00000452944 719 ntTSL 5 BASIC5.42□□□□□ -1.54
VPS4AQ9UN37 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC5.42□□□□□ -1.54
VPS4AQ9UN37 RPS20P4-201ENST00000461659 355 ntBASIC5.42□□□□□ -1.54
VPS4AQ9UN37 ST20-201ENST00000478497 1004 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
VPS4AQ9UN37 RN7SL826P-201ENST00000479724 288 ntBASIC5.42□□□□□ -1.54
VPS4AQ9UN37 AC098583.1-201ENST00000480875 255 ntBASIC5.42□□□□□ -1.54
VPS4AQ9UN37 AC107398.1-201ENST00000486904 505 ntBASIC5.42□□□□□ -1.54
VPS4AQ9UN37 RN7SL184P-201ENST00000488308 297 ntBASIC5.42□□□□□ -1.54
VPS4AQ9UN37 LINC00518-204ENST00000491317 1228 ntTSL 2 BASIC5.42□□□□□ -1.54
VPS4AQ9UN37 DUTP1-201ENST00000493631 470 ntBASIC5.42□□□□□ -1.54
VPS4AQ9UN37 NDUFA5P12-201ENST00000503796 343 ntBASIC5.42□□□□□ -1.54
VPS4AQ9UN37 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC5.42□□□□□ -1.54
VPS4AQ9UN37 CRISP1-203ENST00000505118 1296 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
VPS4AQ9UN37 AC117383.1-201ENST00000507698 422 ntTSL 3 BASIC5.42□□□□□ -1.54
VPS4AQ9UN37 NDUFB5P1-201ENST00000508134 564 ntBASIC5.42□□□□□ -1.54
VPS4AQ9UN37 AC074255.1-201ENST00000511259 501 ntBASIC5.42□□□□□ -1.54
VPS4AQ9UN37 DUXAP5-201ENST00000529668 529 ntBASIC5.42□□□□□ -1.54
VPS4AQ9UN37 AP002370.2-202ENST00000533669 908 ntTSL 5 BASIC5.42□□□□□ -1.54
VPS4AQ9UN37 AC137627.1-201ENST00000545761 289 ntBASIC5.42□□□□□ -1.54
VPS4AQ9UN37 AL359219.2-201ENST00000555184 348 ntBASIC5.42□□□□□ -1.54
VPS4AQ9UN37 AC016987.1-201ENST00000558587 499 ntTSL 2 BASIC5.42□□□□□ -1.54
VPS4AQ9UN37 LINC00933-205ENST00000560917 449 ntTSL 3 BASIC5.42□□□□□ -1.54
VPS4AQ9UN37 AC136944.1-201ENST00000567464 560 ntTSL 5 BASIC5.42□□□□□ -1.54
VPS4AQ9UN37 AC027455.1-201ENST00000574104 594 ntBASIC5.42□□□□□ -1.54
VPS4AQ9UN37 RN7SL622P-201ENST00000585292 275 ntBASIC5.42□□□□□ -1.54
VPS4AQ9UN37 AC004862.1-203ENST00000598433 1020 ntTSL 5 BASIC5.42□□□□□ -1.54
VPS4AQ9UN37 AC026786.2-201ENST00000606110 392 ntTSL 3 BASIC5.42□□□□□ -1.54
VPS4AQ9UN37 AC011374.2-201ENST00000607135 526 ntBASIC5.42□□□□□ -1.54
VPS4AQ9UN37 AC079395.3-201ENST00000615161 484 ntBASIC5.42□□□□□ -1.54
VPS4AQ9UN37 AC022079.2-201ENST00000619739 566 ntBASIC5.42□□□□□ -1.54
VPS4AQ9UN37 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC5.42□□□□□ -1.54
VPS4AQ9UN37 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC5.42□□□□□ -1.54
VPS4AQ9UN37 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC5.42□□□□□ -1.54
VPS4AQ9UN37 SLC26A7-208ENST00000523719 2902 ntAPPRIS P1 TSL 2 BASIC5.42□□□□□ -1.54
VPS4AQ9UN37 TOPBP1-201ENST00000260810 5378 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
VPS4AQ9UN37 LEPROT-206ENST00000613538 4625 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
VPS4AQ9UN37 PPEF1-201ENST00000349874 2687 ntTSL 5 BASIC5.41□□□□□ -1.54
VPS4AQ9UN37 CPXCR1-201ENST00000276127 1630 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
VPS4AQ9UN37 ANKRD30A-204ENST00000602533 4458 ntAPPRIS ALT2 TSL 5 BASIC5.41□□□□□ -1.54
VPS4AQ9UN37 AC018809.2-201ENST00000602436 3823 ntBASIC5.41□□□□□ -1.54
VPS4AQ9UN37 ADAM18-202ENST00000379866 2314 ntAPPRIS ALT2 TSL 1 (best) BASIC5.41□□□□□ -1.54
VPS4AQ9UN37 ALB-202ENST00000401494 1659 ntTSL 5 BASIC5.41□□□□□ -1.54
VPS4AQ9UN37 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
VPS4AQ9UN37 SSX3-201ENST00000298396 1232 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
VPS4AQ9UN37 RNU5B-1-201ENST00000363286 116 ntBASIC5.41□□□□□ -1.54
VPS4AQ9UN37 RNA5SP394-201ENST00000364216 119 ntBASIC5.41□□□□□ -1.54
VPS4AQ9UN37 COMMD6-204ENST00000377619 594 ntTSL 2 BASIC5.41□□□□□ -1.54
VPS4AQ9UN37 AL133270.1-201ENST00000402635 279 ntBASIC5.41□□□□□ -1.54
VPS4AQ9UN37 AL359636.2-201ENST00000412262 259 ntTSL 3 BASIC5.41□□□□□ -1.54
VPS4AQ9UN37 BMS1P17-202ENST00000416720 316 ntBASIC5.41□□□□□ -1.54
VPS4AQ9UN37 BBIP1-203ENST00000423273 492 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
VPS4AQ9UN37 TXNIP-201ENST00000425134 1225 ntTSL 2 BASIC5.41□□□□□ -1.54
VPS4AQ9UN37 OSTCP5-201ENST00000425293 453 ntBASIC5.41□□□□□ -1.54
VPS4AQ9UN37 TMEM183AP1-205ENST00000432739 290 ntBASIC5.41□□□□□ -1.54
VPS4AQ9UN37 AC007327.2-201ENST00000440788 457 ntTSL 3 BASIC5.41□□□□□ -1.54
VPS4AQ9UN37 PCBP1-AS1-232ENST00000442040 1111 ntTSL 3 BASIC5.41□□□□□ -1.54
VPS4AQ9UN37 BBIP1-206ENST00000447005 727 ntAPPRIS P1 TSL 2 BASIC5.41□□□□□ -1.54
VPS4AQ9UN37 MOB4-207ENST00000448447 1021 ntTSL 2 BASIC5.41□□□□□ -1.54
VPS4AQ9UN37 AL096803.2-201ENST00000450032 677 ntBASIC5.41□□□□□ -1.54
VPS4AQ9UN37 AL158069.1-201ENST00000454131 455 ntTSL 5 BASIC5.41□□□□□ -1.54
VPS4AQ9UN37 AC008280.2-201ENST00000455473 307 ntBASIC5.41□□□□□ -1.54
VPS4AQ9UN37 SNORD125-201ENST00000459538 96 ntBASIC5.41□□□□□ -1.54
VPS4AQ9UN37 RN7SL329P-201ENST00000467740 299 ntBASIC5.41□□□□□ -1.54
VPS4AQ9UN37 SSR3-206ENST00000476217 807 ntTSL 3 BASIC5.41□□□□□ -1.54
VPS4AQ9UN37 RPL7P39-201ENST00000481157 744 ntBASIC5.41□□□□□ -1.54
VPS4AQ9UN37 AC069444.1-201ENST00000489428 266 ntTSL 3 BASIC5.41□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 150 ms