Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Gm3764-209ENSMUST00000181550 1093 ntTSL 3 BASIC17.56■□□□□ 0.4
Ddx56Q9D0R4 Gm45442-201ENSMUST00000210038 411 ntTSL 3 BASIC17.56■□□□□ 0.4
Ddx56Q9D0R4 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Ddx56Q9D0R4 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Ddx56Q9D0R4 Purg-201ENSMUST00000070340 1064 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
Ddx56Q9D0R4 Crocc-203ENSMUST00000102491 6582 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Ddx56Q9D0R4 Dzip3-202ENSMUST00000121869 5820 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
Ddx56Q9D0R4 Acvrl1-203ENSMUST00000119063 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Ddx56Q9D0R4 Mettl27-204ENSMUST00000111219 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Ddx56Q9D0R4 Slc16a3-202ENSMUST00000100130 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Ddx56Q9D0R4 Polr3gl-201ENSMUST00000091924 1427 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Ddx56Q9D0R4 Rcbtb2-226ENSMUST00000171767 2692 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Ddx56Q9D0R4 Hand1-201ENSMUST00000036917 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Ddx56Q9D0R4 Rhobtb2-201ENSMUST00000022665 5322 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Ddx56Q9D0R4 Fhl2-201ENSMUST00000008280 1563 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Ddx56Q9D0R4 Ablim1-204ENSMUST00000111524 1251 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Ddx56Q9D0R4 Gm15565-201ENSMUST00000118890 427 ntBASIC17.55■□□□□ 0.4
Ddx56Q9D0R4 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC17.55■□□□□ 0.4
Ddx56Q9D0R4 Gm3264-202ENSMUST00000166776 882 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
Ddx56Q9D0R4 Mir6982-201ENSMUST00000184354 68 ntBASIC17.55■□□□□ 0.4
Ddx56Q9D0R4 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Ddx56Q9D0R4 Gm21057-201ENSMUST00000206022 670 ntTSL 3 BASIC17.55■□□□□ 0.4
Ddx56Q9D0R4 Fkbp3-201ENSMUST00000021332 1022 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Ddx56Q9D0R4 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC17.55■□□□□ 0.4
Ddx56Q9D0R4 Irak1bp1-201ENSMUST00000034783 1159 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Ddx56Q9D0R4 Nnat-201ENSMUST00000088484 458 ntTSL 2 BASIC17.55■□□□□ 0.4
Ddx56Q9D0R4 Acot7-206ENSMUST00000167926 1505 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
Ddx56Q9D0R4 Pdgfa-202ENSMUST00000076095 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Ddx56Q9D0R4 Asic2-201ENSMUST00000021045 3436 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Ddx56Q9D0R4 Zkscan6-202ENSMUST00000071465 2270 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Ddx56Q9D0R4 Wdr13-202ENSMUST00000115623 1749 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
Ddx56Q9D0R4 Tead3-205ENSMUST00000154873 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Ddx56Q9D0R4 Gm26596-201ENSMUST00000180464 2655 ntBASIC17.55■□□□□ 0.4
Ddx56Q9D0R4 Nelfb-201ENSMUST00000059849 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Ddx56Q9D0R4 Dok4-201ENSMUST00000046461 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Ddx56Q9D0R4 L3hypdh-201ENSMUST00000019862 1831 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Ddx56Q9D0R4 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Ddx56Q9D0R4 Lsm1-201ENSMUST00000038421 2663 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Ddx56Q9D0R4 Gm11973-203ENSMUST00000155498 867 ntTSL 3 BASIC17.54■□□□□ 0.4
Ddx56Q9D0R4 Gm29994-201ENSMUST00000195495 1193 ntBASIC17.54■□□□□ 0.4
Ddx56Q9D0R4 Inppl1-201ENSMUST00000035836 4995 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Ddx56Q9D0R4 Pigw-202ENSMUST00000108080 1728 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Ddx56Q9D0R4 Relt-201ENSMUST00000008462 2851 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Ddx56Q9D0R4 Camsap2-203ENSMUST00000192314 4916 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Ddx56Q9D0R4 Lonrf2-202ENSMUST00000147695 6932 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
Ddx56Q9D0R4 Atp5b-201ENSMUST00000026459 1916 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Ddx56Q9D0R4 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Ddx56Q9D0R4 Prkcg-202ENSMUST00000172109 2119 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Ddx56Q9D0R4 Slc27a4-201ENSMUST00000080065 4054 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Ddx56Q9D0R4 Cadm3-201ENSMUST00000005470 2518 ntTSL 5 BASIC17.54■□□□□ 0.4
Ddx56Q9D0R4 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Ddx56Q9D0R4 Gm15582-201ENSMUST00000132849 1581 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Ddx56Q9D0R4 Mybl2-201ENSMUST00000018005 3651 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Ddx56Q9D0R4 Tubb6-201ENSMUST00000001513 1757 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Ddx56Q9D0R4 Bean1-204ENSMUST00000171018 3386 ntAPPRIS P4 TSL 1 (best) BASIC17.53■□□□□ 0.4
Ddx56Q9D0R4 Gas6-201ENSMUST00000033828 2548 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Ddx56Q9D0R4 Znrf1-201ENSMUST00000095176 3108 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Ddx56Q9D0R4 Brd3os-202ENSMUST00000209765 1898 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
Ddx56Q9D0R4 C1qtnf5-202ENSMUST00000114816 1259 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Ddx56Q9D0R4 1810062O18Rik-202ENSMUST00000128848 745 ntTSL 3 BASIC17.53■□□□□ 0.4
Ddx56Q9D0R4 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
Ddx56Q9D0R4 Gm7889-201ENSMUST00000185591 958 ntBASIC17.53■□□□□ 0.4
Ddx56Q9D0R4 Pldi-201ENSMUST00000036304 853 ntTSL 2 BASIC17.53■□□□□ 0.4
Ddx56Q9D0R4 Ptges2-201ENSMUST00000028162 4978 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Ddx56Q9D0R4 Cdk12-203ENSMUST00000107539 5912 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
Ddx56Q9D0R4 Gfy-201ENSMUST00000179443 1849 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
Ddx56Q9D0R4 Wdr45-201ENSMUST00000043045 1609 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Ddx56Q9D0R4 Csk-201ENSMUST00000034863 2749 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Ddx56Q9D0R4 Lrrtm1-202ENSMUST00000159616 2541 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Ddx56Q9D0R4 Cdk9-202ENSMUST00000120105 1565 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Ddx56Q9D0R4 Coro1a-202ENSMUST00000106364 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Ddx56Q9D0R4 Ap1m1-201ENSMUST00000003117 2084 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Ddx56Q9D0R4 Actl10-201ENSMUST00000104928 1501 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
Ddx56Q9D0R4 Actl10-202ENSMUST00000226583 1501 ntBASIC17.52■□□□□ 0.4
Ddx56Q9D0R4 Lrch3-203ENSMUST00000135193 2794 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
Ddx56Q9D0R4 Lhx6-203ENSMUST00000112963 3481 ntTSL 2 BASIC17.52■□□□□ 0.4
Ddx56Q9D0R4 Snx27-201ENSMUST00000029783 6261 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Ddx56Q9D0R4 Lrrfip1-212ENSMUST00000189617 2155 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Ddx56Q9D0R4 Pigz-201ENSMUST00000052174 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Ddx56Q9D0R4 Gm9821-201ENSMUST00000178895 1953 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
Ddx56Q9D0R4 Gm7213-201ENSMUST00000215977 950 ntBASIC17.52■□□□□ 0.4
Ddx56Q9D0R4 Mrpl21-201ENSMUST00000025743 802 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Ddx56Q9D0R4 Pole4-201ENSMUST00000095786 1769 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Ddx56Q9D0R4 Lzts2-203ENSMUST00000179108 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Ddx56Q9D0R4 Gtf3a-201ENSMUST00000132102 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Ddx56Q9D0R4 Isl2-201ENSMUST00000034869 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Ddx56Q9D0R4 Zfp326-201ENSMUST00000031227 2667 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Ddx56Q9D0R4 Mid1ip1-202ENSMUST00000115524 2022 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Ddx56Q9D0R4 Mycbp-202ENSMUST00000106202 1536 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
Ddx56Q9D0R4 Phf7-203ENSMUST00000226565 1971 ntBASIC17.51■□□□□ 0.39
Ddx56Q9D0R4 Rasgrp1-201ENSMUST00000102534 5229 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
Ddx56Q9D0R4 Zrsr2-202ENSMUST00000112289 2735 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
Ddx56Q9D0R4 Kdm2a-202ENSMUST00000075856 7242 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
Ddx56Q9D0R4 Fbrsl1-202ENSMUST00000069483 4720 ntAPPRIS P2 TSL 5 BASIC17.51■□□□□ 0.39
Ddx56Q9D0R4 Mef2d-203ENSMUST00000107559 1791 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Ddx56Q9D0R4 Gm17509-201ENSMUST00000165680 2375 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
Ddx56Q9D0R4 Atg5-201ENSMUST00000039286 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Ddx56Q9D0R4 Abcb10-201ENSMUST00000075578 4306 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Ddx56Q9D0R4 Atp5g1-202ENSMUST00000107684 596 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Ddx56Q9D0R4 Rps5-202ENSMUST00000108539 794 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 22.1 ms