Protein–RNA interactions for Protein: Q8R5L3

Vps39, Vam6/Vps39-like protein, mousemouse

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps39Q8R5L3 Large2-215ENSMUST00000176810 2477 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
Vps39Q8R5L3 Zbtb9-201ENSMUST00000120016 2798 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Vps39Q8R5L3 Chmp2b-201ENSMUST00000004965 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Vps39Q8R5L3 H2-D1-202ENSMUST00000172785 2102 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Vps39Q8R5L3 Stxbp3-205ENSMUST00000138552 1789 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Vps39Q8R5L3 Hoxb2-201ENSMUST00000100523 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Vps39Q8R5L3 Agpat3-202ENSMUST00000105387 1316 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Vps39Q8R5L3 Zranb2-203ENSMUST00000106058 2924 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Vps39Q8R5L3 Mdm1-204ENSMUST00000169817 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Vps39Q8R5L3 Nipal3-201ENSMUST00000102549 5153 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
Vps39Q8R5L3 Hdhd2-202ENSMUST00000097521 1716 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Vps39Q8R5L3 Mmp23-201ENSMUST00000030937 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Vps39Q8R5L3 Endov-203ENSMUST00000106245 5126 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Vps39Q8R5L3 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Vps39Q8R5L3 Ubtf-207ENSMUST00000128016 1062 ntTSL 2 BASIC16.74■□□□□ 0.27
Vps39Q8R5L3 Odf3b-204ENSMUST00000227834 930 ntBASIC16.74■□□□□ 0.27
Vps39Q8R5L3 1700020N01Rik-201ENSMUST00000057341 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Vps39Q8R5L3 Gm26596-201ENSMUST00000180464 2655 ntBASIC16.74■□□□□ 0.27
Vps39Q8R5L3 Gas6-201ENSMUST00000033828 2548 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Vps39Q8R5L3 Cadps2-201ENSMUST00000018122 4723 ntAPPRIS P3 TSL 5 BASIC16.74■□□□□ 0.27
Vps39Q8R5L3 Mef2d-203ENSMUST00000107559 1791 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Vps39Q8R5L3 Lrig2-207ENSMUST00000199070 5991 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Vps39Q8R5L3 Whrn-201ENSMUST00000063650 4016 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Vps39Q8R5L3 Erich2-201ENSMUST00000100041 1749 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Vps39Q8R5L3 Dlk2-202ENSMUST00000166280 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Vps39Q8R5L3 Rbck1-202ENSMUST00000109847 2384 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Vps39Q8R5L3 Snx25-203ENSMUST00000110378 3445 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
Vps39Q8R5L3 BC030336-201ENSMUST00000060175 4831 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Vps39Q8R5L3 Cd5-201ENSMUST00000025571 2069 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Vps39Q8R5L3 Pds5b-208ENSMUST00000202170 6598 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
Vps39Q8R5L3 Tsfm-202ENSMUST00000120547 1271 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Vps39Q8R5L3 Cox7a2l-202ENSMUST00000167741 1147 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Vps39Q8R5L3 Anapc13-203ENSMUST00000188398 727 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
Vps39Q8R5L3 Zfas1-205ENSMUST00000189909 738 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Vps39Q8R5L3 Rps12-206ENSMUST00000218221 460 ntTSL 5 BASIC16.73■□□□□ 0.27
Vps39Q8R5L3 Lsm10-201ENSMUST00000055575 943 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Vps39Q8R5L3 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
Vps39Q8R5L3 Gm10549-201ENSMUST00000097634 450 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
Vps39Q8R5L3 Pole4-201ENSMUST00000095786 1769 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Vps39Q8R5L3 Gnas-202ENSMUST00000087871 3903 ntAPPRIS P4 TSL 1 (best) BASIC16.73■□□□□ 0.27
Vps39Q8R5L3 Irak1-205ENSMUST00000114353 1896 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
Vps39Q8R5L3 Cnppd1-208ENSMUST00000190679 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Vps39Q8R5L3 Camsap3-201ENSMUST00000057028 4450 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
Vps39Q8R5L3 Ddx41-204ENSMUST00000224765 2199 ntBASIC16.72■□□□□ 0.27
Vps39Q8R5L3 Cldn7-201ENSMUST00000018713 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Vps39Q8R5L3 Lhfp-203ENSMUST00000147139 1932 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
Vps39Q8R5L3 Gm3488-202ENSMUST00000181562 1945 ntAPPRIS P5 TSL 5 BASIC16.72■□□□□ 0.27
Vps39Q8R5L3 Gtf3c4-204ENSMUST00000171404 7127 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Vps39Q8R5L3 Mycn-201ENSMUST00000043396 2674 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Vps39Q8R5L3 Lrrc36-206ENSMUST00000216765 2301 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
Vps39Q8R5L3 Wipf3-204ENSMUST00000132855 4516 ntAPPRIS P4 TSL 5 BASIC16.72■□□□□ 0.27
Vps39Q8R5L3 Gapdh-202ENSMUST00000117757 1273 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Vps39Q8R5L3 Gm17182-201ENSMUST00000163795 860 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Vps39Q8R5L3 Cck-201ENSMUST00000035120 691 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Vps39Q8R5L3 Rex1bd-201ENSMUST00000075175 671 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Vps39Q8R5L3 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Vps39Q8R5L3 Mrpl49-201ENSMUST00000007482 1722 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Vps39Q8R5L3 Kdelr2-201ENSMUST00000110731 1829 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Vps39Q8R5L3 Tmem47-203ENSMUST00000171953 1801 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Vps39Q8R5L3 Zfp446-202ENSMUST00000108535 2594 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Vps39Q8R5L3 Ret-202ENSMUST00000088790 4497 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Vps39Q8R5L3 Dnajb14-201ENSMUST00000090178 9477 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Vps39Q8R5L3 Arhgef9-216ENSMUST00000197206 2227 ntTSL 5 BASIC16.72■□□□□ 0.27
Vps39Q8R5L3 Dnaaf3-201ENSMUST00000094897 2224 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Vps39Q8R5L3 Sgta-201ENSMUST00000005067 1969 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Vps39Q8R5L3 Stox2-208ENSMUST00000211737 4573 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Vps39Q8R5L3 Sufu-202ENSMUST00000111867 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Vps39Q8R5L3 Cldn4-201ENSMUST00000051401 1816 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
Vps39Q8R5L3 Gna12-201ENSMUST00000000153 3416 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Vps39Q8R5L3 Pid1-201ENSMUST00000168574 2664 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Vps39Q8R5L3 Gusb-202ENSMUST00000111307 932 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Vps39Q8R5L3 Gm715-201ENSMUST00000117865 831 ntBASIC16.71■□□□□ 0.27
Vps39Q8R5L3 Gm13647-201ENSMUST00000154654 622 ntTSL 5 BASIC16.71■□□□□ 0.27
Vps39Q8R5L3 Gm17035-201ENSMUST00000170557 419 ntTSL 3 BASIC16.71■□□□□ 0.27
Vps39Q8R5L3 Gm2990-201ENSMUST00000180662 1118 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Vps39Q8R5L3 Gm28876-201ENSMUST00000188137 703 ntTSL 3 BASIC16.71■□□□□ 0.27
Vps39Q8R5L3 Gm7791-201ENSMUST00000219066 539 ntBASIC16.71■□□□□ 0.27
Vps39Q8R5L3 Cldn22-201ENSMUST00000038693 995 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
Vps39Q8R5L3 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
Vps39Q8R5L3 Zkscan2-203ENSMUST00000128217 2218 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Vps39Q8R5L3 Platr31-201ENSMUST00000180653 1466 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Vps39Q8R5L3 Plac9a-201ENSMUST00000052286 1555 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Vps39Q8R5L3 Pacs2-202ENSMUST00000220541 3101 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Vps39Q8R5L3 Ubr2-202ENSMUST00000113337 7633 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.26
Vps39Q8R5L3 Rab37-202ENSMUST00000067754 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.26
Vps39Q8R5L3 Adam22-201ENSMUST00000046838 2773 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.26
Vps39Q8R5L3 Neurl1a-202ENSMUST00000111808 4157 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
Vps39Q8R5L3 Rnf168-203ENSMUST00000171474 4460 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Vps39Q8R5L3 Shisa2-201ENSMUST00000053949 3119 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Vps39Q8R5L3 Nudt4-201ENSMUST00000020217 3210 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Vps39Q8R5L3 Ttll5-201ENSMUST00000040179 5081 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
Vps39Q8R5L3 Lrp8-201ENSMUST00000030356 4555 ntAPPRIS P5 TSL 5 BASIC16.7■□□□□ 0.26
Vps39Q8R5L3 Mettl27-204ENSMUST00000111219 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Vps39Q8R5L3 Nploc4-202ENSMUST00000103017 4025 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Vps39Q8R5L3 Sqstm1-205ENSMUST00000143379 1266 ntTSL 5 BASIC16.7■□□□□ 0.26
Vps39Q8R5L3 Ankrd29-201ENSMUST00000118525 3242 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Vps39Q8R5L3 Adam33-201ENSMUST00000052104 2795 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Vps39Q8R5L3 Kcnn1-207ENSMUST00000212509 1608 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
Vps39Q8R5L3 Rcbtb2-226ENSMUST00000171767 2692 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Vps39Q8R5L3 Slc16a3-202ENSMUST00000100130 2386 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 29.6 ms