Protein–RNA interactions for Protein: Q8CEG5

Ccdc28b, Coiled-coil domain-containing protein 28B, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28bQ8CEG5 A930024E05Rik-201ENSMUST00000148466 1896 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Ccdc28bQ8CEG5 Fosl1-201ENSMUST00000025850 1707 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Ccdc28bQ8CEG5 Ccdc51-201ENSMUST00000026735 1526 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Ccdc28bQ8CEG5 Fam214a-202ENSMUST00000170846 4355 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
Ccdc28bQ8CEG5 Tmem114-201ENSMUST00000023400 1406 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Ccdc28bQ8CEG5 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Ccdc28bQ8CEG5 Izumo2-201ENSMUST00000085422 632 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Ccdc28bQ8CEG5 Sptbn4-203ENSMUST00000108363 4724 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Ccdc28bQ8CEG5 Sptbn4-204ENSMUST00000108364 4740 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Ccdc28bQ8CEG5 Arhgef2-202ENSMUST00000107510 4390 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Ccdc28bQ8CEG5 Mdm1-204ENSMUST00000169817 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Ccdc28bQ8CEG5 Gm10564-201ENSMUST00000097750 3113 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Ccdc28bQ8CEG5 Rnf220-203ENSMUST00000102690 1842 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Ccdc28bQ8CEG5 Rgl3-201ENSMUST00000045726 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Ccdc28bQ8CEG5 Ranbp9-201ENSMUST00000144326 3371 ntAPPRIS P2 TSL 5 BASIC16.56■□□□□ 0.24
Ccdc28bQ8CEG5 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC16.56■□□□□ 0.24
Ccdc28bQ8CEG5 Gm10153-202ENSMUST00000210290 963 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
Ccdc28bQ8CEG5 AC133650.2-201ENSMUST00000217036 607 ntTSL 3 BASIC16.56■□□□□ 0.24
Ccdc28bQ8CEG5 Flywch2-201ENSMUST00000024704 694 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Ccdc28bQ8CEG5 Wtap-201ENSMUST00000007007 2051 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Ccdc28bQ8CEG5 Ado-201ENSMUST00000075686 4445 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
Ccdc28bQ8CEG5 Enah-210ENSMUST00000193074 1971 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
Ccdc28bQ8CEG5 Gata5os-201ENSMUST00000069943 1678 ntTSL 2 BASIC16.56■□□□□ 0.24
Ccdc28bQ8CEG5 Cxxc5-201ENSMUST00000060722 2271 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Ccdc28bQ8CEG5 Wscd1-203ENSMUST00000108511 2866 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
Ccdc28bQ8CEG5 Elf2-201ENSMUST00000062009 3353 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Ccdc28bQ8CEG5 Tnfaip2-202ENSMUST00000109792 3284 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Ccdc28bQ8CEG5 Mettl16-201ENSMUST00000010698 2073 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Ccdc28bQ8CEG5 Gm26560-201ENSMUST00000181240 2619 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Ccdc28bQ8CEG5 Nhs-201ENSMUST00000081569 4881 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
Ccdc28bQ8CEG5 Col27a1-201ENSMUST00000036300 7612 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Ccdc28bQ8CEG5 Akp-ps1-202ENSMUST00000212812 1959 ntTSL 5 BASIC16.55■□□□□ 0.24
Ccdc28bQ8CEG5 Gm16141-201ENSMUST00000152073 790 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Ccdc28bQ8CEG5 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Ccdc28bQ8CEG5 Gm4881-201ENSMUST00000206705 1152 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
Ccdc28bQ8CEG5 Tbc1d7-201ENSMUST00000021797 1239 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Ccdc28bQ8CEG5 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Ccdc28bQ8CEG5 Hnrnpa1-202ENSMUST00000087351 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Ccdc28bQ8CEG5 Zkscan2-203ENSMUST00000128217 2218 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Ccdc28bQ8CEG5 Coro1a-201ENSMUST00000032949 1660 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Ccdc28bQ8CEG5 Ryr2-203ENSMUST00000220597 4924 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Ccdc28bQ8CEG5 Mrpl9-201ENSMUST00000029786 1612 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Ccdc28bQ8CEG5 Klf9-201ENSMUST00000036884 3263 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Ccdc28bQ8CEG5 Rbfox2-204ENSMUST00000171751 3558 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Ccdc28bQ8CEG5 Cxcl12-202ENSMUST00000112866 1878 ntAPPRIS ALT1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ccdc28bQ8CEG5 Asic1-205ENSMUST00000228185 1818 ntBASIC16.54■□□□□ 0.24
Ccdc28bQ8CEG5 St7l-211ENSMUST00000200132 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ccdc28bQ8CEG5 Adipor1-202ENSMUST00000112237 3446 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ccdc28bQ8CEG5 Wnk1-202ENSMUST00000060043 10575 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ccdc28bQ8CEG5 Tead3-206ENSMUST00000156862 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ccdc28bQ8CEG5 Rbm47-203ENSMUST00000113724 2186 ntAPPRIS P3 TSL 5 BASIC16.54■□□□□ 0.24
Ccdc28bQ8CEG5 Gm45723-201ENSMUST00000212135 1783 ntTSL 5 BASIC16.54■□□□□ 0.24
Ccdc28bQ8CEG5 Xrcc1-205ENSMUST00000205573 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ccdc28bQ8CEG5 Ddx39b-201ENSMUST00000068056 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ccdc28bQ8CEG5 C1qtnf12-201ENSMUST00000024338 1315 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ccdc28bQ8CEG5 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ccdc28bQ8CEG5 App-201ENSMUST00000005406 3176 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ccdc28bQ8CEG5 Serac1-201ENSMUST00000024570 2033 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ccdc28bQ8CEG5 Ran-201ENSMUST00000031383 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ccdc28bQ8CEG5 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
Ccdc28bQ8CEG5 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC16.54■□□□□ 0.24
Ccdc28bQ8CEG5 Hist1h2ap-201ENSMUST00000081342 482 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
Ccdc28bQ8CEG5 B4galt3-201ENSMUST00000064272 1998 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ccdc28bQ8CEG5 Pcsk5-202ENSMUST00000050715 5783 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Ccdc28bQ8CEG5 Arfip2-202ENSMUST00000084782 2254 ntAPPRIS P2 TSL 5 BASIC16.54■□□□□ 0.24
Ccdc28bQ8CEG5 Foxp4-202ENSMUST00000113262 3198 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ccdc28bQ8CEG5 Cldn4-201ENSMUST00000051401 1816 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
Ccdc28bQ8CEG5 Parg-201ENSMUST00000022470 4413 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ccdc28bQ8CEG5 Cacnb1-204ENSMUST00000107561 1778 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Ccdc28bQ8CEG5 Pnkp-203ENSMUST00000107876 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ccdc28bQ8CEG5 Dusp14-202ENSMUST00000100705 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Ccdc28bQ8CEG5 Ankrd17-202ENSMUST00000081914 8057 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
Ccdc28bQ8CEG5 Zmynd11-204ENSMUST00000110635 3881 ntTSL 5 BASIC16.53■□□□□ 0.24
Ccdc28bQ8CEG5 Csrp2-201ENSMUST00000020403 1384 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Ccdc28bQ8CEG5 Dlx1-201ENSMUST00000037119 4111 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Ccdc28bQ8CEG5 Sgsm2-201ENSMUST00000057631 4743 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Ccdc28bQ8CEG5 Kcnn1-208ENSMUST00000212611 2528 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Ccdc28bQ8CEG5 Ivns1abp-203ENSMUST00000111887 2783 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Ccdc28bQ8CEG5 Ccdc106-204ENSMUST00000207974 2492 ntTSL 2 BASIC16.53■□□□□ 0.24
Ccdc28bQ8CEG5 Eif4g3-205ENSMUST00000105831 6235 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
Ccdc28bQ8CEG5 Rexo1-201ENSMUST00000057910 5250 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Ccdc28bQ8CEG5 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Ccdc28bQ8CEG5 Gm13148-201ENSMUST00000118892 745 ntBASIC16.53■□□□□ 0.24
Ccdc28bQ8CEG5 E130218I03Rik-201ENSMUST00000122952 943 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Ccdc28bQ8CEG5 A4galt-202ENSMUST00000164614 2128 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Ccdc28bQ8CEG5 Aldh1a3-204ENSMUST00000174215 1066 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Ccdc28bQ8CEG5 Ccnd2-202ENSMUST00000201066 983 ntTSL 2 BASIC16.53■□□□□ 0.24
Ccdc28bQ8CEG5 9530085L11Rik-201ENSMUST00000203963 2115 ntBASIC16.53■□□□□ 0.24
Ccdc28bQ8CEG5 Tpsb2-201ENSMUST00000069616 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Ccdc28bQ8CEG5 Oas1b-201ENSMUST00000086377 1832 ntTSL 5 BASIC16.53■□□□□ 0.24
Ccdc28bQ8CEG5 Bmp8b-201ENSMUST00000002457 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Ccdc28bQ8CEG5 Abhd5-204ENSMUST00000156520 3157 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Ccdc28bQ8CEG5 Fam160a2-203ENSMUST00000118726 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Ccdc28bQ8CEG5 Ccdc17-201ENSMUST00000051869 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Ccdc28bQ8CEG5 Sufu-202ENSMUST00000111867 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Ccdc28bQ8CEG5 Lsr-202ENSMUST00000098553 1930 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Ccdc28bQ8CEG5 Nadk-203ENSMUST00000105613 3152 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Ccdc28bQ8CEG5 Acot7-203ENSMUST00000105652 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Ccdc28bQ8CEG5 Mfge8-201ENSMUST00000032825 2125 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
Ccdc28bQ8CEG5 Anks6-201ENSMUST00000084616 3552 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
Retrieved 100 of 76,532 protein–RNA pairs in 37 ms