Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Gm18421-201ENSMUST00000204122 625 ntBASIC18.53■□□□□ 0.56
Trim47Q8C0E3 Madcam1-201ENSMUST00000020554 1436 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trim47Q8C0E3 Mrps6-201ENSMUST00000047429 846 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trim47Q8C0E3 Scrib-201ENSMUST00000002603 5599 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trim47Q8C0E3 March8-202ENSMUST00000101032 4611 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trim47Q8C0E3 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trim47Q8C0E3 Pacs2-202ENSMUST00000220541 3101 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trim47Q8C0E3 Fjx1-201ENSMUST00000099678 3134 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
Trim47Q8C0E3 Ube2z-201ENSMUST00000100528 3997 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trim47Q8C0E3 Sh3bp1-201ENSMUST00000001226 2510 ntTSL 5 BASIC18.53■□□□□ 0.56
Trim47Q8C0E3 Kcnd3-202ENSMUST00000098761 7169 ntAPPRIS ALT1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trim47Q8C0E3 Kank3-201ENSMUST00000048560 2641 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trim47Q8C0E3 Rassf8-203ENSMUST00000111704 5446 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
Trim47Q8C0E3 Idh1-201ENSMUST00000097709 2302 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trim47Q8C0E3 Arid1a-205ENSMUST00000145664 8187 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.56
Trim47Q8C0E3 Cyr61-201ENSMUST00000029846 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trim47Q8C0E3 Tulp1-202ENSMUST00000114794 1738 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Trim47Q8C0E3 Itgb7-201ENSMUST00000001327 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trim47Q8C0E3 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
Trim47Q8C0E3 Wnt4-201ENSMUST00000045747 4194 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trim47Q8C0E3 Polr3e-203ENSMUST00000207481 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trim47Q8C0E3 Nfe2l1-202ENSMUST00000107657 3869 ntAPPRIS P3 TSL 5 BASIC18.52■□□□□ 0.56
Trim47Q8C0E3 Slc47a1-201ENSMUST00000010267 2639 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
Trim47Q8C0E3 Insl3-201ENSMUST00000034261 623 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trim47Q8C0E3 Pgm3-202ENSMUST00000072585 1920 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Trim47Q8C0E3 Prss8-201ENSMUST00000032988 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Trim47Q8C0E3 Slk-201ENSMUST00000026043 7278 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
Trim47Q8C0E3 Eif4a2-201ENSMUST00000023599 2208 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trim47Q8C0E3 Enpp1-202ENSMUST00000105520 6777 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trim47Q8C0E3 Eps8-203ENSMUST00000111878 3560 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trim47Q8C0E3 Secisbp2-202ENSMUST00000110044 1915 ntTSL 2 BASIC18.51■□□□□ 0.55
Trim47Q8C0E3 Fgf8-205ENSMUST00000111927 843 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trim47Q8C0E3 Gm20422-202ENSMUST00000149782 956 ntTSL 2 BASIC18.51■□□□□ 0.55
Trim47Q8C0E3 Snhg10-202ENSMUST00000222812 527 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Trim47Q8C0E3 Sdhaf4-201ENSMUST00000027338 683 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trim47Q8C0E3 Tctex1d4-201ENSMUST00000062206 990 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trim47Q8C0E3 Hist1h2ad-201ENSMUST00000090776 572 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
Trim47Q8C0E3 Glrx2-210ENSMUST00000185362 3337 ntAPPRIS P4 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trim47Q8C0E3 Gm11841-201ENSMUST00000117060 1963 ntBASIC18.51■□□□□ 0.55
Trim47Q8C0E3 Myh7b-201ENSMUST00000092995 6163 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
Trim47Q8C0E3 Aatk-203ENSMUST00000103020 5687 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trim47Q8C0E3 Cdk9-202ENSMUST00000120105 1565 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Trim47Q8C0E3 Zfp264-201ENSMUST00000208656 1563 ntBASIC18.51■□□□□ 0.55
Trim47Q8C0E3 Chpt1-201ENSMUST00000020253 3898 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trim47Q8C0E3 Gm10461-201ENSMUST00000202073 4786 ntBASIC18.5■□□□□ 0.55
Trim47Q8C0E3 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Trim47Q8C0E3 Mipep-201ENSMUST00000063562 3015 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trim47Q8C0E3 Gjb3-201ENSMUST00000046532 1880 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trim47Q8C0E3 Zfp648-201ENSMUST00000086195 1892 ntAPPRIS P1 TSL 3 BASIC18.5■□□□□ 0.55
Trim47Q8C0E3 Gm5898-201ENSMUST00000121016 2071 ntBASIC18.5■□□□□ 0.55
Trim47Q8C0E3 Qprt-201ENSMUST00000032912 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trim47Q8C0E3 Ube2k-201ENSMUST00000142407 4893 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trim47Q8C0E3 Casp3-204ENSMUST00000211115 2601 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trim47Q8C0E3 1810013L24Rik-201ENSMUST00000023150 4066 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trim47Q8C0E3 Spdef-205ENSMUST00000167489 1708 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
Trim47Q8C0E3 Sap18-202ENSMUST00000111268 662 ntTSL 2 BASIC18.5■□□□□ 0.55
Trim47Q8C0E3 Gm28402-201ENSMUST00000188574 373 ntTSL 3 BASIC18.5■□□□□ 0.55
Trim47Q8C0E3 Sftpb-201ENSMUST00000070437 1131 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
Trim47Q8C0E3 Rad23a-202ENSMUST00000109761 1842 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trim47Q8C0E3 Zmynd19-201ENSMUST00000028350 3903 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trim47Q8C0E3 Dtx2-201ENSMUST00000005072 2562 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trim47Q8C0E3 Wdr55-201ENSMUST00000049323 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trim47Q8C0E3 Lonp1-201ENSMUST00000047226 2963 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trim47Q8C0E3 Map3k1-201ENSMUST00000109267 6978 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
Trim47Q8C0E3 Timm44-201ENSMUST00000003029 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trim47Q8C0E3 Prob1-203ENSMUST00000190196 4888 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
Trim47Q8C0E3 Piezo2-201ENSMUST00000046860 2849 ntTSL 5 BASIC18.5■□□□□ 0.55
Trim47Q8C0E3 Rev1-201ENSMUST00000027251 4262 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trim47Q8C0E3 Myo16-204ENSMUST00000208309 2462 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Trim47Q8C0E3 Pitx1-201ENSMUST00000021968 2451 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trim47Q8C0E3 Rab11b-203ENSMUST00000173860 1544 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Trim47Q8C0E3 Map3k7-202ENSMUST00000080933 5669 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trim47Q8C0E3 Prkcg-202ENSMUST00000172109 2119 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Trim47Q8C0E3 Gm12359-202ENSMUST00000141696 713 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Trim47Q8C0E3 Gm12359-203ENSMUST00000153181 680 ntTSL 3 BASIC18.49■□□□□ 0.55
Trim47Q8C0E3 Gm19553-201ENSMUST00000175723 494 ntTSL 5 BASIC18.49■□□□□ 0.55
Trim47Q8C0E3 Ank2-226ENSMUST00000189368 339 ntBASIC18.49■□□□□ 0.55
Trim47Q8C0E3 Gm29707-201ENSMUST00000196325 491 ntBASIC18.49■□□□□ 0.55
Trim47Q8C0E3 AC107711.5-202ENSMUST00000226429 702 ntBASIC18.49■□□□□ 0.55
Trim47Q8C0E3 Rpp25l-201ENSMUST00000038434 856 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trim47Q8C0E3 Syt9-201ENSMUST00000073459 3817 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trim47Q8C0E3 Pdgfa-203ENSMUST00000110896 1363 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
Trim47Q8C0E3 Ppp1r9b-201ENSMUST00000038696 4508 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trim47Q8C0E3 Irak1-205ENSMUST00000114353 1896 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
Trim47Q8C0E3 Krt81-201ENSMUST00000061185 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trim47Q8C0E3 Klc1-202ENSMUST00000118471 2272 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Trim47Q8C0E3 Armc10-202ENSMUST00000095495 2700 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Trim47Q8C0E3 Matn4-201ENSMUST00000103103 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trim47Q8C0E3 Mdm1-204ENSMUST00000169817 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trim47Q8C0E3 Kmt5b-202ENSMUST00000052699 3290 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
Trim47Q8C0E3 Chtf8-206ENSMUST00000177068 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trim47Q8C0E3 Gm14859-201ENSMUST00000117752 357 ntBASIC18.48■□□□□ 0.55
Trim47Q8C0E3 Rerg-204ENSMUST00000149100 635 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Trim47Q8C0E3 Insl6-201ENSMUST00000052380 708 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trim47Q8C0E3 Tmem128-201ENSMUST00000087511 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trim47Q8C0E3 Tmem233-201ENSMUST00000111997 2477 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
Trim47Q8C0E3 Tenm3-204ENSMUST00000110346 2267 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Trim47Q8C0E3 Il4i1-202ENSMUST00000118125 2275 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
Trim47Q8C0E3 Cpeb2-204ENSMUST00000166713 6846 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
Trim47Q8C0E3 H2-DMb1-201ENSMUST00000114232 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Retrieved 100 of 76,532 protein–RNA pairs in 23.1 ms