Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Neil3-201ENSMUST00000047768 2253 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Trim56Q80VI1 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Trim56Q80VI1 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Trim56Q80VI1 Fgf8-205ENSMUST00000111927 843 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Trim56Q80VI1 Cul4a-202ENSMUST00000121426 1044 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Trim56Q80VI1 Gm11950-201ENSMUST00000121615 838 ntBASIC19.73■□□□□ 0.75
Trim56Q80VI1 Cd70-201ENSMUST00000019633 842 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Trim56Q80VI1 Rpl13a-204ENSMUST00000209711 495 ntTSL 3 BASIC19.73■□□□□ 0.75
Trim56Q80VI1 Plppr2-203ENSMUST00000190387 2608 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Trim56Q80VI1 Tmem254b-201ENSMUST00000022418 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Trim56Q80VI1 Lrch4-201ENSMUST00000031734 3078 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
Trim56Q80VI1 Ankrd29-201ENSMUST00000118525 3242 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Trim56Q80VI1 Atf4-201ENSMUST00000109605 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Trim56Q80VI1 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC19.73■□□□□ 0.75
Trim56Q80VI1 Slc35e1-202ENSMUST00000152080 4383 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Trim56Q80VI1 Ppp3cb-206ENSMUST00000161989 2322 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Trim56Q80VI1 Msx2-201ENSMUST00000021922 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Trim56Q80VI1 Slc25a20-201ENSMUST00000035222 1783 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Trim56Q80VI1 Atp5b-201ENSMUST00000026459 1916 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Trim56Q80VI1 Ust-201ENSMUST00000061601 4228 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Trim56Q80VI1 Pex11a-201ENSMUST00000032761 2241 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Trim56Q80VI1 Gnaz-201ENSMUST00000037813 3519 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Trim56Q80VI1 9330151L19Rik-201ENSMUST00000181850 2545 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Trim56Q80VI1 Perp-201ENSMUST00000019998 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Trim56Q80VI1 Ncoa5-201ENSMUST00000040381 3179 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Trim56Q80VI1 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Trim56Q80VI1 Flg-207ENSMUST00000180293 768 ntAPPRIS ALT2 BASIC19.72■□□□□ 0.75
Trim56Q80VI1 BC034090-204ENSMUST00000186156 4873 ntAPPRIS P5 TSL 5 BASIC19.72■□□□□ 0.75
Trim56Q80VI1 Gm29707-201ENSMUST00000196325 491 ntBASIC19.72■□□□□ 0.75
Trim56Q80VI1 Sdhaf4-201ENSMUST00000027338 683 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Trim56Q80VI1 Insl3-201ENSMUST00000034261 623 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Trim56Q80VI1 Tasp1-201ENSMUST00000046656 2480 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Trim56Q80VI1 Idh1-201ENSMUST00000097709 2302 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Trim56Q80VI1 E230001N04Rik-202ENSMUST00000181029 2091 ntBASIC19.72■□□□□ 0.75
Trim56Q80VI1 Apbb1-205ENSMUST00000187057 1630 ntTSL 5 BASIC19.72■□□□□ 0.75
Trim56Q80VI1 Klhdc8a-201ENSMUST00000046071 4269 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Trim56Q80VI1 Rasgef1b-205ENSMUST00000161148 2430 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Trim56Q80VI1 Tenm3-204ENSMUST00000110346 2267 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Trim56Q80VI1 Gm9821-201ENSMUST00000178895 1953 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
Trim56Q80VI1 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Trim56Q80VI1 March11-203ENSMUST00000152841 1365 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Trim56Q80VI1 Sobp-201ENSMUST00000040275 4980 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Trim56Q80VI1 Ogfod2-201ENSMUST00000024470 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Trim56Q80VI1 Opn4-202ENSMUST00000168444 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Trim56Q80VI1 Trim31-201ENSMUST00000078438 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Trim56Q80VI1 Mrps12-204ENSMUST00000171183 883 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
Trim56Q80VI1 Gm44973-201ENSMUST00000207050 1003 ntAPPRIS P1 TSL 3 BASIC19.71■□□□□ 0.75
Trim56Q80VI1 1700022H01Rik-201ENSMUST00000219142 387 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Trim56Q80VI1 Odf3b-201ENSMUST00000049968 1040 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Trim56Q80VI1 Tmem128-201ENSMUST00000087511 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Trim56Q80VI1 Lce1i-201ENSMUST00000090866 731 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Trim56Q80VI1 Rala-201ENSMUST00000009003 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Trim56Q80VI1 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Trim56Q80VI1 Paqr4-201ENSMUST00000024702 2507 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Trim56Q80VI1 Cfap206-201ENSMUST00000029971 2246 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
Trim56Q80VI1 4933427J07Rik-201ENSMUST00000156275 1533 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Trim56Q80VI1 Dclk2-208ENSMUST00000194452 2066 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Trim56Q80VI1 Osbpl1a-205ENSMUST00000119512 1947 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Trim56Q80VI1 Arpc5-201ENSMUST00000077755 1914 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Trim56Q80VI1 Dmap1-201ENSMUST00000102687 1566 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Trim56Q80VI1 Xpr1-202ENSMUST00000111774 2753 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Trim56Q80VI1 Ruvbl2-201ENSMUST00000107771 1834 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Trim56Q80VI1 Tril-201ENSMUST00000127748 5363 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
Trim56Q80VI1 Prrt4-201ENSMUST00000159200 3411 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Trim56Q80VI1 Gm20422-202ENSMUST00000149782 956 ntTSL 2 BASIC19.7■□□□□ 0.74
Trim56Q80VI1 Gas5-203ENSMUST00000159119 665 ntTSL 5 BASIC19.7■□□□□ 0.74
Trim56Q80VI1 4930515G01Rik-201ENSMUST00000173208 1247 ntBASIC19.7■□□□□ 0.74
Trim56Q80VI1 Adck1-204ENSMUST00000222695 2253 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Trim56Q80VI1 Chrna2-202ENSMUST00000206455 1933 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
Trim56Q80VI1 Wdr13-202ENSMUST00000115623 1749 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
Trim56Q80VI1 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Trim56Q80VI1 Slc29a1-202ENSMUST00000064889 1988 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
Trim56Q80VI1 Mettl27-205ENSMUST00000111221 1796 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Trim56Q80VI1 Chsy3-201ENSMUST00000080721 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Trim56Q80VI1 Erich2-203ENSMUST00000134607 1659 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
Trim56Q80VI1 Wt1-205ENSMUST00000143043 3090 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Trim56Q80VI1 Cdv3-202ENSMUST00000072249 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Trim56Q80VI1 Sytl3-204ENSMUST00000159880 1296 ntTSL 5 BASIC19.69■□□□□ 0.74
Trim56Q80VI1 Lrrfip2-202ENSMUST00000098340 3191 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Trim56Q80VI1 Slc35b2-202ENSMUST00000223987 1766 ntBASIC19.69■□□□□ 0.74
Trim56Q80VI1 Mfsd4b3-201ENSMUST00000095749 1787 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Trim56Q80VI1 Mon1a-201ENSMUST00000035202 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Trim56Q80VI1 Lcmt2-201ENSMUST00000099486 2047 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Trim56Q80VI1 Wnt4-201ENSMUST00000045747 4194 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Trim56Q80VI1 Krt6a-201ENSMUST00000023788 2256 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Trim56Q80VI1 U2af2-209ENSMUST00000209099 2088 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
Trim56Q80VI1 Hoxc9-201ENSMUST00000001706 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Trim56Q80VI1 Ocel1-201ENSMUST00000002469 1611 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Trim56Q80VI1 Dlx3-201ENSMUST00000092768 2607 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Trim56Q80VI1 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trim56Q80VI1 Vopp1-201ENSMUST00000114297 2919 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trim56Q80VI1 Zfp804a-201ENSMUST00000047527 4620 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trim56Q80VI1 Tmsb10-202ENSMUST00000114049 690 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trim56Q80VI1 Gm19345-201ENSMUST00000172815 993 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trim56Q80VI1 Arl5b-206ENSMUST00000193836 481 ntTSL 2 BASIC19.68■□□□□ 0.74
Trim56Q80VI1 AC130711.1-201ENSMUST00000224277 906 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
Trim56Q80VI1 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
Trim56Q80VI1 Scarf2-201ENSMUST00000012161 3302 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trim56Q80VI1 Rab35-201ENSMUST00000031492 2820 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trim56Q80VI1 Stxbp5l-202ENSMUST00000114775 1691 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 25.3 ms