Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Krt81-201ENSMUST00000061185 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Upf3bQ3ULL6 Agpat3-203ENSMUST00000105388 3681 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
Upf3bQ3ULL6 Fosl1-201ENSMUST00000025850 1707 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Upf3bQ3ULL6 Polr3e-203ENSMUST00000207481 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Upf3bQ3ULL6 Sap18-203ENSMUST00000111269 459 ntTSL 2 BASIC17.9■□□□□ 0.46
Upf3bQ3ULL6 Gm13836-201ENSMUST00000121159 501 ntBASIC17.9■□□□□ 0.46
Upf3bQ3ULL6 Gm22697-201ENSMUST00000175194 63 ntBASIC17.9■□□□□ 0.46
Upf3bQ3ULL6 4930544D05Rik-204ENSMUST00000180052 755 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
Upf3bQ3ULL6 Gm3272-201ENSMUST00000181181 1229 ntBASIC17.9■□□□□ 0.46
Upf3bQ3ULL6 Pcyox1-206ENSMUST00000204116 546 ntTSL 5 BASIC17.9■□□□□ 0.46
Upf3bQ3ULL6 Pthlh-202ENSMUST00000204197 1281 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
Upf3bQ3ULL6 Uchl3-201ENSMUST00000002289 903 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Upf3bQ3ULL6 Prdx5-201ENSMUST00000025904 1262 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Upf3bQ3ULL6 Xpa-201ENSMUST00000030013 955 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Upf3bQ3ULL6 Hoxa6-201ENSMUST00000062829 874 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Upf3bQ3ULL6 Vpreb1-201ENSMUST00000075017 766 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Upf3bQ3ULL6 Gm10566-201ENSMUST00000086739 996 ntBASIC17.9■□□□□ 0.46
Upf3bQ3ULL6 Gm16835-201ENSMUST00000140488 2809 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Upf3bQ3ULL6 Adgrb2-204ENSMUST00000106015 4982 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Upf3bQ3ULL6 Sytl3-201ENSMUST00000097430 2100 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Upf3bQ3ULL6 Cdk12-203ENSMUST00000107539 5912 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
Upf3bQ3ULL6 Dok7-202ENSMUST00000101298 2443 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Upf3bQ3ULL6 Slc6a8-206ENSMUST00000164449 2151 ntTSL 5 BASIC17.9■□□□□ 0.46
Upf3bQ3ULL6 Gm12359-201ENSMUST00000139017 1399 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Upf3bQ3ULL6 Nucb2-201ENSMUST00000032895 1685 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Upf3bQ3ULL6 Nbea-201ENSMUST00000029374 10986 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
Upf3bQ3ULL6 Gm11841-201ENSMUST00000117060 1963 ntBASIC17.9■□□□□ 0.46
Upf3bQ3ULL6 Prrt4-201ENSMUST00000159200 3411 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
Upf3bQ3ULL6 Asph-204ENSMUST00000084915 2884 ntTSL 5 BASIC17.89■□□□□ 0.46
Upf3bQ3ULL6 Nelfb-201ENSMUST00000059849 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
Upf3bQ3ULL6 Vopp1-201ENSMUST00000114297 2919 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
Upf3bQ3ULL6 Nectin3-202ENSMUST00000023335 9116 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
Upf3bQ3ULL6 Rala-201ENSMUST00000009003 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Upf3bQ3ULL6 L3hypdh-201ENSMUST00000019862 1831 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Upf3bQ3ULL6 Bcl7c-205ENSMUST00000205977 891 ntTSL 2 BASIC17.89■□□□□ 0.45
Upf3bQ3ULL6 Lsm1-203ENSMUST00000211168 343 ntTSL 3 BASIC17.89■□□□□ 0.45
Upf3bQ3ULL6 Pdrg1-201ENSMUST00000028972 1273 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Upf3bQ3ULL6 Myoz1-201ENSMUST00000090469 1289 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Upf3bQ3ULL6 Sar1a-201ENSMUST00000020285 2613 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Upf3bQ3ULL6 Ino80e-203ENSMUST00000106343 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Upf3bQ3ULL6 5830415G21Rik-201ENSMUST00000192543 1332 ntBASIC17.89■□□□□ 0.45
Upf3bQ3ULL6 Qprt-201ENSMUST00000032912 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Upf3bQ3ULL6 Zfp668-203ENSMUST00000106262 3169 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Upf3bQ3ULL6 Zfand5-201ENSMUST00000025659 2834 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Upf3bQ3ULL6 B4galt3-205ENSMUST00000126699 1758 ntTSL 5 BASIC17.89■□□□□ 0.45
Upf3bQ3ULL6 Erlin1-201ENSMUST00000071698 3228 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
Upf3bQ3ULL6 Kctd9-205ENSMUST00000152243 2528 ntTSL 2 BASIC17.89■□□□□ 0.45
Upf3bQ3ULL6 Zranb2-203ENSMUST00000106058 2924 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Upf3bQ3ULL6 Fam131b-201ENSMUST00000031891 4065 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Upf3bQ3ULL6 Gm26548-201ENSMUST00000181165 2029 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Upf3bQ3ULL6 Disp3-201ENSMUST00000047720 5282 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
Upf3bQ3ULL6 Celf3-208ENSMUST00000198316 2505 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Upf3bQ3ULL6 Serf1-205ENSMUST00000152286 465 ntTSL 3 BASIC17.88■□□□□ 0.45
Upf3bQ3ULL6 Gm18101-201ENSMUST00000215769 548 ntBASIC17.88■□□□□ 0.45
Upf3bQ3ULL6 Ttc32-203ENSMUST00000219488 768 ntTSL 3 BASIC17.88■□□□□ 0.45
Upf3bQ3ULL6 Gm18032-201ENSMUST00000222541 538 ntBASIC17.88■□□□□ 0.45
Upf3bQ3ULL6 Kdm2a-202ENSMUST00000075856 7242 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
Upf3bQ3ULL6 Ldlrad1-201ENSMUST00000094916 1093 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
Upf3bQ3ULL6 Chst2-201ENSMUST00000036267 7328 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Upf3bQ3ULL6 Gopc-202ENSMUST00000105475 4317 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
Upf3bQ3ULL6 Nmnat3-201ENSMUST00000112935 2166 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Upf3bQ3ULL6 Cldn7-201ENSMUST00000018713 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Upf3bQ3ULL6 Mst1-204ENSMUST00000162886 2209 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
Upf3bQ3ULL6 Acvrl1-203ENSMUST00000119063 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Upf3bQ3ULL6 Chtf8-206ENSMUST00000177068 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Upf3bQ3ULL6 Ccdc106-204ENSMUST00000207974 2492 ntTSL 2 BASIC17.88■□□□□ 0.45
Upf3bQ3ULL6 Casp3-201ENSMUST00000093517 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Upf3bQ3ULL6 Myo5a-214ENSMUST00000155282 6372 ntAPPRIS P5 TSL 5 BASIC17.87■□□□□ 0.45
Upf3bQ3ULL6 Fam149b-216ENSMUST00000225942 2151 ntAPPRIS ALT2 BASIC17.87■□□□□ 0.45
Upf3bQ3ULL6 Fxyd6-201ENSMUST00000085939 1788 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Upf3bQ3ULL6 Naf1-201ENSMUST00000118009 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Upf3bQ3ULL6 Gm13186-201ENSMUST00000118031 316 ntBASIC17.87■□□□□ 0.45
Upf3bQ3ULL6 Gm27389-201ENSMUST00000183622 195 ntBASIC17.87■□□□□ 0.45
Upf3bQ3ULL6 Krtcap3-201ENSMUST00000054829 904 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Upf3bQ3ULL6 Brpf1-203ENSMUST00000113121 4603 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
Upf3bQ3ULL6 Ngrn-201ENSMUST00000117989 1317 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Upf3bQ3ULL6 Sh2b1-203ENSMUST00000205440 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Upf3bQ3ULL6 Kdm5b-203ENSMUST00000112198 5413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Upf3bQ3ULL6 Znrf1-201ENSMUST00000095176 3108 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Upf3bQ3ULL6 Aspscr1-204ENSMUST00000106159 1615 ntTSL 5 BASIC17.87■□□□□ 0.45
Upf3bQ3ULL6 Tubb6-201ENSMUST00000001513 1757 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Upf3bQ3ULL6 Tmem131l-201ENSMUST00000052342 4815 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
Upf3bQ3ULL6 Ank1-203ENSMUST00000110688 7206 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Upf3bQ3ULL6 Iqsec2-203ENSMUST00000112605 6017 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
Upf3bQ3ULL6 AA467197-202ENSMUST00000110512 751 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Upf3bQ3ULL6 Ccnd3-ps-201ENSMUST00000117963 881 ntBASIC17.86■□□□□ 0.45
Upf3bQ3ULL6 Cldn18-203ENSMUST00000131922 860 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Upf3bQ3ULL6 Rapgef3os1-201ENSMUST00000149373 483 ntTSL 3 BASIC17.86■□□□□ 0.45
Upf3bQ3ULL6 Gm26039-201ENSMUST00000158152 144 ntBASIC17.86■□□□□ 0.45
Upf3bQ3ULL6 Ccdc125-202ENSMUST00000170347 1216 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Upf3bQ3ULL6 Nme3-201ENSMUST00000024978 715 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Upf3bQ3ULL6 Lce1h-201ENSMUST00000051521 706 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Upf3bQ3ULL6 Slc16a7-205ENSMUST00000210780 2562 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
Upf3bQ3ULL6 Gm6190-201ENSMUST00000220683 1374 ntBASIC17.86■□□□□ 0.45
Upf3bQ3ULL6 Gm9917-202ENSMUST00000181099 1499 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Upf3bQ3ULL6 Ddhd1-201ENSMUST00000051310 5012 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
Upf3bQ3ULL6 Tulp1-202ENSMUST00000114794 1738 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Upf3bQ3ULL6 Lrrc47-205ENSMUST00000169622 3468 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Upf3bQ3ULL6 Timm44-201ENSMUST00000003029 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Upf3bQ3ULL6 Fam109a-203ENSMUST00000198271 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Retrieved 100 of 76,532 protein–RNA pairs in 25.9 ms