Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Nap1l1-201ENSMUST00000065917 1486 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Ddb1Q3U1J4 Slc29a1-222ENSMUST00000171847 2033 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
Ddb1Q3U1J4 Tcp11-202ENSMUST00000043925 1746 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
Ddb1Q3U1J4 Men1-205ENSMUST00000113501 2508 ntTSL 5 BASIC21.23■□□□□ 0.99
Ddb1Q3U1J4 Adcy3-202ENSMUST00000124505 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Ddb1Q3U1J4 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Ddb1Q3U1J4 Galnt11-201ENSMUST00000045737 2552 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Ddb1Q3U1J4 Tmed4-201ENSMUST00000004508 2003 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Ddb1Q3U1J4 Gm11536-201ENSMUST00000130733 535 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Ddb1Q3U1J4 Rasd2-201ENSMUST00000132133 1299 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Ddb1Q3U1J4 Snhg15-203ENSMUST00000134527 675 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Ddb1Q3U1J4 Gm45231-201ENSMUST00000208629 1064 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Ddb1Q3U1J4 Gm31545-201ENSMUST00000209358 1219 ntTSL 5 BASIC21.23■□□□□ 0.99
Ddb1Q3U1J4 Ndufaf2-202ENSMUST00000223734 556 ntBASIC21.23■□□□□ 0.99
Ddb1Q3U1J4 Gm10175-201ENSMUST00000086013 645 ntBASIC21.23■□□□□ 0.99
Ddb1Q3U1J4 Otub1-202ENSMUST00000123594 1728 ntTSL 5 BASIC21.23■□□□□ 0.99
Ddb1Q3U1J4 Echdc2-201ENSMUST00000052999 1307 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Ddb1Q3U1J4 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
Ddb1Q3U1J4 Msantd3-202ENSMUST00000064807 1378 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Ddb1Q3U1J4 Smpd5-202ENSMUST00000163991 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Ddb1Q3U1J4 Mast4-205ENSMUST00000166726 5968 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
Ddb1Q3U1J4 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
Ddb1Q3U1J4 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Ddb1Q3U1J4 Kat14-208ENSMUST00000147747 3299 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Ddb1Q3U1J4 Wdr61-203ENSMUST00000121204 1290 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Ddb1Q3U1J4 Cdpf1-203ENSMUST00000134631 786 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
Ddb1Q3U1J4 Gm12497-201ENSMUST00000138778 237 ntBASIC21.22■□□□□ 0.99
Ddb1Q3U1J4 Tmem176a-202ENSMUST00000168406 1086 ntAPPRIS P1 TSL 3 BASIC21.22■□□□□ 0.99
Ddb1Q3U1J4 4930445N18Rik-202ENSMUST00000181345 1033 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Ddb1Q3U1J4 Gm7507-201ENSMUST00000183053 1008 ntBASIC21.22■□□□□ 0.99
Ddb1Q3U1J4 Gm20383-201ENSMUST00000203799 1227 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Ddb1Q3U1J4 Cmtm3-204ENSMUST00000212081 850 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
Ddb1Q3U1J4 1600017P15Rik-201ENSMUST00000083427 412 ntBASIC21.22■□□□□ 0.99
Ddb1Q3U1J4 Bend6-202ENSMUST00000115161 2231 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Ddb1Q3U1J4 Ehmt2-203ENSMUST00000097342 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Ddb1Q3U1J4 Cdk9-202ENSMUST00000120105 1565 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Ddb1Q3U1J4 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Ddb1Q3U1J4 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Ddb1Q3U1J4 Fam3a-206ENSMUST00000114143 1899 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Ddb1Q3U1J4 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Ddb1Q3U1J4 Ctu1-201ENSMUST00000038332 2475 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Ddb1Q3U1J4 Ncam2-202ENSMUST00000067602 3563 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Ddb1Q3U1J4 Mrpl49-201ENSMUST00000007482 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Ddb1Q3U1J4 Znhit6-201ENSMUST00000098534 2339 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
Ddb1Q3U1J4 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Ddb1Q3U1J4 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC21.21■□□□□ 0.99
Ddb1Q3U1J4 Epo-202ENSMUST00000111038 855 ntAPPRIS P3 TSL 5 BASIC21.21■□□□□ 0.99
Ddb1Q3U1J4 Gm4459-201ENSMUST00000118750 468 ntBASIC21.21■□□□□ 0.99
Ddb1Q3U1J4 Sult2b1-204ENSMUST00000209739 1858 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
Ddb1Q3U1J4 4930455H04Rik-201ENSMUST00000117592 1341 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Ddb1Q3U1J4 4921511I17Rik-201ENSMUST00000220545 1341 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Ddb1Q3U1J4 Ptn-201ENSMUST00000101534 1614 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Ddb1Q3U1J4 Apbb1-205ENSMUST00000187057 1630 ntTSL 5 BASIC21.21■□□□□ 0.99
Ddb1Q3U1J4 Fbxo45-201ENSMUST00000042732 4179 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Ddb1Q3U1J4 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
Ddb1Q3U1J4 Dcps-202ENSMUST00000119847 1445 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Ddb1Q3U1J4 Gatc-201ENSMUST00000139167 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
Ddb1Q3U1J4 Usb1-201ENSMUST00000034245 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
Ddb1Q3U1J4 Sept8-203ENSMUST00000120878 1806 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
Ddb1Q3U1J4 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ddb1Q3U1J4 Gm15706-201ENSMUST00000139612 899 ntTSL 2 BASIC21.2■□□□□ 0.98
Ddb1Q3U1J4 Flg-204ENSMUST00000178752 756 ntAPPRIS ALT2 BASIC21.2■□□□□ 0.98
Ddb1Q3U1J4 AC084391.1-201ENSMUST00000200651 141 ntBASIC21.2■□□□□ 0.98
Ddb1Q3U1J4 Dmtn-210ENSMUST00000228824 2377 ntBASIC21.2■□□□□ 0.98
Ddb1Q3U1J4 Panx1-202ENSMUST00000164273 5732 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ddb1Q3U1J4 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC21.2■□□□□ 0.98
Ddb1Q3U1J4 Cend1-201ENSMUST00000084436 1672 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
Ddb1Q3U1J4 Zfp668-202ENSMUST00000106261 2410 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ddb1Q3U1J4 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Ddb1Q3U1J4 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ddb1Q3U1J4 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ddb1Q3U1J4 Mbd6-202ENSMUST00000119078 4287 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ddb1Q3U1J4 Tatdn2-201ENSMUST00000089018 3096 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ddb1Q3U1J4 Nab2-202ENSMUST00000099157 2311 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Ddb1Q3U1J4 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ddb1Q3U1J4 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ddb1Q3U1J4 Cyp11b2-201ENSMUST00000167634 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ddb1Q3U1J4 Ada-201ENSMUST00000017841 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ddb1Q3U1J4 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
Ddb1Q3U1J4 Gja3-201ENSMUST00000061614 2766 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ddb1Q3U1J4 Chchd7-203ENSMUST00000119307 889 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
Ddb1Q3U1J4 Oip5-202ENSMUST00000123818 1082 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ddb1Q3U1J4 Hmgb1-208ENSMUST00000139443 923 ntTSL 2 BASIC21.19■□□□□ 0.98
Ddb1Q3U1J4 Gm13849-201ENSMUST00000153328 835 ntTSL 5 BASIC21.19■□□□□ 0.98
Ddb1Q3U1J4 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ddb1Q3U1J4 Ran-201ENSMUST00000031383 2377 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ddb1Q3U1J4 Anapc5-203ENSMUST00000196640 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ddb1Q3U1J4 Gm5648-201ENSMUST00000122244 1587 ntBASIC21.19■□□□□ 0.98
Ddb1Q3U1J4 Gm9889-202ENSMUST00000206983 1577 ntBASIC21.19■□□□□ 0.98
Ddb1Q3U1J4 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Ddb1Q3U1J4 Borcs5-201ENSMUST00000062755 1764 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Ddb1Q3U1J4 Gm45203-201ENSMUST00000206384 1831 ntBASIC21.18■□□□□ 0.98
Ddb1Q3U1J4 Stk32c-202ENSMUST00000165870 1883 ntTSL 5 BASIC21.18■□□□□ 0.98
Ddb1Q3U1J4 Laptm4b-201ENSMUST00000022867 1902 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Ddb1Q3U1J4 9930012K11Rik-205ENSMUST00000153871 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Ddb1Q3U1J4 9930012K11Rik-201ENSMUST00000058240 1986 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
Ddb1Q3U1J4 Zfp688-201ENSMUST00000106300 1015 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
Ddb1Q3U1J4 Gm7222-201ENSMUST00000117512 906 ntBASIC21.18■□□□□ 0.98
Ddb1Q3U1J4 Dynlt1b-201ENSMUST00000179569 768 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Ddb1Q3U1J4 D530014G21Rik-201ENSMUST00000208416 587 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Retrieved 100 of 76,532 protein–RNA pairs in 22.5 ms