Protein–RNA interactions for Protein: P53783

Sox1, Transcription factor SOX-1, mousemouse

Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox1P53783 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Sox1P53783 Gm14268-201ENSMUST00000132465 682 ntTSL 3 BASIC17.06■□□□□ 0.32
Sox1P53783 Cdpf1-203ENSMUST00000134631 786 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
Sox1P53783 Pcp2-205ENSMUST00000142431 524 ntTSL 2 BASIC17.06■□□□□ 0.32
Sox1P53783 9530003J23Rik-202ENSMUST00000159193 1033 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Sox1P53783 Gm29707-201ENSMUST00000196325 491 ntBASIC17.06■□□□□ 0.32
Sox1P53783 Gm44450-201ENSMUST00000199528 114 ntBASIC17.06■□□□□ 0.32
Sox1P53783 1700030N18Rik-201ENSMUST00000202497 966 ntBASIC17.06■□□□□ 0.32
Sox1P53783 AC154757.1-201ENSMUST00000228289 336 ntBASIC17.06■□□□□ 0.32
Sox1P53783 Ppm1a-201ENSMUST00000021514 7668 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Sox1P53783 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Sox1P53783 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Sox1P53783 Stxbp5l-202ENSMUST00000114775 1691 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Sox1P53783 Hmbs-201ENSMUST00000077353 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Sox1P53783 Fem1c-201ENSMUST00000036226 5726 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Sox1P53783 Trim44-201ENSMUST00000102573 5612 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Sox1P53783 H2-K1-205ENSMUST00000172912 1570 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Sox1P53783 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Sox1P53783 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Sox1P53783 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Sox1P53783 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC17.06■□□□□ 0.32
Sox1P53783 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Sox1P53783 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Sox1P53783 Pqlc3-201ENSMUST00000054536 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Sox1P53783 3110082I17Rik-201ENSMUST00000066052 1429 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Sox1P53783 Aida-206ENSMUST00000193625 1810 ntTSL 3 BASIC17.05■□□□□ 0.32
Sox1P53783 Camk2b-202ENSMUST00000019133 2223 ntTSL 5 BASIC17.05■□□□□ 0.32
Sox1P53783 Leng1-201ENSMUST00000019878 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Sox1P53783 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Sox1P53783 Rusc2-202ENSMUST00000098106 5325 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Sox1P53783 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Sox1P53783 Dio1-202ENSMUST00000106748 396 ntTSL 5 BASIC17.05■□□□□ 0.32
Sox1P53783 Tgfb1i1-203ENSMUST00000163609 1053 ntTSL 5 BASIC17.05■□□□□ 0.32
Sox1P53783 Sec61g-206ENSMUST00000166950 754 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Sox1P53783 Sec61g-207ENSMUST00000178855 779 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Sox1P53783 4930448I06Rik-201ENSMUST00000194002 546 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Sox1P53783 Gm30684-201ENSMUST00000205632 600 ntTSL 3 BASIC17.05■□□□□ 0.32
Sox1P53783 Gm5626-201ENSMUST00000222151 1058 ntBASIC17.05■□□□□ 0.32
Sox1P53783 CT025535.1-201ENSMUST00000227172 491 ntBASIC17.05■□□□□ 0.32
Sox1P53783 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
Sox1P53783 Gm16054-201ENSMUST00000139469 1819 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Sox1P53783 Lrrfip2-207ENSMUST00000197256 1819 ntTSL 5 BASIC17.05■□□□□ 0.32
Sox1P53783 Gabarapl1-201ENSMUST00000032264 1820 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Sox1P53783 Bcl9l-206ENSMUST00000220303 5760 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Sox1P53783 Ipp-202ENSMUST00000106479 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Sox1P53783 Ipp-201ENSMUST00000030461 2115 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
Sox1P53783 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
Sox1P53783 Vsig10-201ENSMUST00000086464 2052 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
Sox1P53783 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Sox1P53783 Cdc27-202ENSMUST00000106961 1863 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Sox1P53783 Hist1h4k-201ENSMUST00000102983 312 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
Sox1P53783 Bmpr1b-203ENSMUST00000106230 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Sox1P53783 Gm13962-201ENSMUST00000131512 611 ntTSL 5 BASIC17.04■□□□□ 0.32
Sox1P53783 Pcp2-204ENSMUST00000136105 504 ntAPPRIS P4 TSL 1 (best) BASIC17.04■□□□□ 0.32
Sox1P53783 Tmem208-201ENSMUST00000015000 785 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Sox1P53783 Zdhhc23-202ENSMUST00000165648 1278 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Sox1P53783 Tmem176a-202ENSMUST00000168406 1086 ntAPPRIS P1 TSL 3 BASIC17.04■□□□□ 0.32
Sox1P53783 Gm3336-201ENSMUST00000179347 1149 ntAPPRIS P2 TSL 5 BASIC17.04■□□□□ 0.32
Sox1P53783 Gm10605-201ENSMUST00000182342 665 ntTSL 3 BASIC17.04■□□□□ 0.32
Sox1P53783 Gm38708-201ENSMUST00000203855 677 ntTSL 5 BASIC17.04■□□□□ 0.32
Sox1P53783 Gm18421-201ENSMUST00000204122 625 ntBASIC17.04■□□□□ 0.32
Sox1P53783 Gm3336-202ENSMUST00000213065 842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Sox1P53783 AI463170-203ENSMUST00000219353 430 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Sox1P53783 Erich4-201ENSMUST00000098663 911 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Sox1P53783 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Sox1P53783 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Sox1P53783 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC17.04■□□□□ 0.32
Sox1P53783 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Sox1P53783 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Sox1P53783 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Sox1P53783 Gm14261-201ENSMUST00000145105 1429 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Sox1P53783 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Sox1P53783 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Sox1P53783 Arpc1b-211ENSMUST00000196111 1394 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Sox1P53783 Snai3-201ENSMUST00000006762 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Sox1P53783 Ptprf-201ENSMUST00000049074 7656 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
Sox1P53783 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
Sox1P53783 Mkl2-203ENSMUST00000115809 667 ntTSL 2 BASIC17.03■□□□□ 0.32
Sox1P53783 Cyb561d2-205ENSMUST00000195235 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Sox1P53783 Gm43691-201ENSMUST00000196625 697 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Sox1P53783 AC124549.3-201ENSMUST00000225541 367 ntBASIC17.03■□□□□ 0.32
Sox1P53783 Mrpl54-201ENSMUST00000046114 604 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Sox1P53783 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
Sox1P53783 Slc25a2-201ENSMUST00000058635 1369 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
Sox1P53783 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Sox1P53783 Zfp655-206ENSMUST00000200039 1765 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Sox1P53783 Enah-203ENSMUST00000111025 3385 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
Sox1P53783 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
Sox1P53783 Gm42922-201ENSMUST00000195887 2078 ntBASIC17.02■□□□□ 0.32
Sox1P53783 Tm2d3-202ENSMUST00000065574 1478 ntAPPRIS P4 TSL 1 (best) BASIC17.02■□□□□ 0.32
Sox1P53783 Il11ra2-201ENSMUST00000108006 1299 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Sox1P53783 Prmt7-203ENSMUST00000109297 1094 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Sox1P53783 Gm16151-201ENSMUST00000129696 639 ntTSL 3 BASIC17.02■□□□□ 0.32
Sox1P53783 Gm14104-201ENSMUST00000135990 356 ntTSL 5 BASIC17.02■□□□□ 0.32
Sox1P53783 Ndufa1-201ENSMUST00000016571 419 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Sox1P53783 Snrpf-201ENSMUST00000020203 861 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Sox1P53783 Gm44945-201ENSMUST00000206764 1187 ntBASIC17.02■□□□□ 0.32
Sox1P53783 Stum-205ENSMUST00000211561 1063 ntAPPRIS ALT1 TSL 5 BASIC17.02■□□□□ 0.32
Sox1P53783 Gm7229-201ENSMUST00000214719 1007 ntBASIC17.02■□□□□ 0.32
Sox1P53783 Ftl1-ps1-202ENSMUST00000222435 938 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 18.2 ms