Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Neu1-201ENSMUST00000007253 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
RaraP11416 Ptgis-202ENSMUST00000088041 1711 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
RaraP11416 Sfrp1-201ENSMUST00000033952 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
RaraP11416 Sarm1-202ENSMUST00000108287 4868 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
RaraP11416 Rab11fip3-202ENSMUST00000120691 5103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
RaraP11416 Gm45736-201ENSMUST00000210592 1352 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
RaraP11416 Naxd-201ENSMUST00000033901 1359 ntTSL 2 BASIC18.08■□□□□ 0.49
RaraP11416 Synpo-205ENSMUST00000130044 4970 ntAPPRIS P3 TSL 2 BASIC18.08■□□□□ 0.48
RaraP11416 Gfy-201ENSMUST00000179443 1849 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
RaraP11416 Rhobtb1-202ENSMUST00000067908 4422 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
RaraP11416 Atox1-201ENSMUST00000108857 541 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
RaraP11416 Gm13168-201ENSMUST00000121771 632 ntBASIC18.08■□□□□ 0.48
RaraP11416 Atp23-202ENSMUST00000168520 1043 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
RaraP11416 Gm7791-201ENSMUST00000219066 539 ntBASIC18.08■□□□□ 0.48
RaraP11416 Lysmd2-201ENSMUST00000034702 1189 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
RaraP11416 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
RaraP11416 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
RaraP11416 Pusl1-201ENSMUST00000097737 1243 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
RaraP11416 Dnah9-202ENSMUST00000108691 2671 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
RaraP11416 Actr8-201ENSMUST00000016115 2119 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
RaraP11416 Uhmk1-202ENSMUST00000123399 7775 ntTSL 5 BASIC18.08■□□□□ 0.48
RaraP11416 Parg-204ENSMUST00000164137 3013 ntTSL 5 BASIC18.08■□□□□ 0.48
RaraP11416 Perp-201ENSMUST00000019998 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
RaraP11416 Kcnh2-202ENSMUST00000115098 3193 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
RaraP11416 L3hypdh-201ENSMUST00000019862 1831 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RaraP11416 Gramd3-201ENSMUST00000070166 2605 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RaraP11416 Fam171a1-203ENSMUST00000091505 3449 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
RaraP11416 Zpr1-206ENSMUST00000156440 2984 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RaraP11416 Slc16a7-205ENSMUST00000210780 2562 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
RaraP11416 Nisch-221ENSMUST00000171735 1763 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
RaraP11416 Bnip2-201ENSMUST00000034754 2464 ntAPPRIS P4 TSL 1 (best) BASIC18.07■□□□□ 0.48
RaraP11416 Trim28-201ENSMUST00000005705 3245 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RaraP11416 Zfp512b-201ENSMUST00000108789 5714 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RaraP11416 Sctr-201ENSMUST00000072886 2012 ntAPPRIS P3 TSL 2 BASIC18.07■□□□□ 0.48
RaraP11416 Otx2os1-204ENSMUST00000227221 751 ntBASIC18.07■□□□□ 0.48
RaraP11416 Gm8994-201ENSMUST00000077886 1236 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
RaraP11416 Taok3-203ENSMUST00000111978 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RaraP11416 BC030336-201ENSMUST00000060175 4831 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RaraP11416 Klc1-202ENSMUST00000118471 2272 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
RaraP11416 Rbm47-203ENSMUST00000113724 2186 ntAPPRIS P3 TSL 5 BASIC18.07■□□□□ 0.48
RaraP11416 Cspp1-203ENSMUST00000118263 2162 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
RaraP11416 Hsd3b2-201ENSMUST00000107021 1788 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RaraP11416 Phf7-201ENSMUST00000022459 2084 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RaraP11416 Cdc23-201ENSMUST00000025228 2084 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
RaraP11416 Pola2-202ENSMUST00000165143 2397 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
RaraP11416 Gpd1l-201ENSMUST00000084853 1436 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
RaraP11416 Stradb-201ENSMUST00000027185 2960 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
RaraP11416 Gm8189-202ENSMUST00000211035 2039 ntTSL 5 BASIC18.06■□□□□ 0.48
RaraP11416 Nfkbid-201ENSMUST00000046177 2039 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
RaraP11416 Rilpl1-201ENSMUST00000062153 2249 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
RaraP11416 Sprn-201ENSMUST00000059241 3374 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
RaraP11416 Crebbp-201ENSMUST00000023165 10820 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
RaraP11416 Gm26663-201ENSMUST00000181105 1882 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
RaraP11416 Sp3os-201ENSMUST00000123087 583 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
RaraP11416 Steap1-201ENSMUST00000015796 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
RaraP11416 Gm9803-201ENSMUST00000057649 563 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
RaraP11416 Snx27-202ENSMUST00000107283 3531 ntAPPRIS P4 TSL 1 (best) BASIC18.06■□□□□ 0.48
RaraP11416 Mapk1-202ENSMUST00000069107 5099 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
RaraP11416 Amigo1-202ENSMUST00000106656 5482 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
RaraP11416 Ankrd23-201ENSMUST00000054665 1964 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
RaraP11416 Nmt2-203ENSMUST00000102989 2162 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
RaraP11416 Gaa-202ENSMUST00000106258 1369 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
RaraP11416 Cldn7-201ENSMUST00000018713 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RaraP11416 Ost4-201ENSMUST00000132034 576 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RaraP11416 Zfas1-205ENSMUST00000189909 738 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
RaraP11416 Agfg1-206ENSMUST00000189220 8044 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
RaraP11416 Krt9-201ENSMUST00000059707 2580 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RaraP11416 Evc-202ENSMUST00000114148 2119 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
RaraP11416 Nucb2-201ENSMUST00000032895 1685 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
RaraP11416 Tlk2-204ENSMUST00000106941 3699 ntAPPRIS ALT1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RaraP11416 Plaa-201ENSMUST00000107107 2784 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RaraP11416 Ehmt2-204ENSMUST00000114033 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
RaraP11416 Bend4-204ENSMUST00000201972 8268 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
RaraP11416 Pigs-201ENSMUST00000048073 2501 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RaraP11416 Lca5l-202ENSMUST00000113804 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
RaraP11416 Tmem47-203ENSMUST00000171953 1801 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RaraP11416 Gnb3-201ENSMUST00000024206 1846 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RaraP11416 Kcnq2-204ENSMUST00000103047 2899 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
RaraP11416 Gm12359-201ENSMUST00000139017 1399 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
RaraP11416 Ak3-201ENSMUST00000025696 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
RaraP11416 Dmgdh-201ENSMUST00000048001 2992 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
RaraP11416 Ranbp9-201ENSMUST00000144326 3371 ntAPPRIS P2 TSL 5 BASIC18.04■□□□□ 0.48
RaraP11416 4930455H04Rik-201ENSMUST00000117592 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
RaraP11416 Tax1bp3-201ENSMUST00000040687 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
RaraP11416 Slc6a1-204ENSMUST00000204074 1740 ntTSL 5 BASIC18.04■□□□□ 0.48
RaraP11416 Zcchc17-202ENSMUST00000134159 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
RaraP11416 Dtx2-202ENSMUST00000111142 2650 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
RaraP11416 Gm9917-202ENSMUST00000181099 1499 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
RaraP11416 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC18.04■□□□□ 0.48
RaraP11416 Gm13181-201ENSMUST00000120117 1069 ntBASIC18.04■□□□□ 0.48
RaraP11416 Tsfm-202ENSMUST00000120547 1271 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
RaraP11416 Gm44924-201ENSMUST00000138087 421 ntTSL 3 BASIC18.04■□□□□ 0.48
RaraP11416 AC154649.1-201ENSMUST00000227392 384 ntBASIC18.04■□□□□ 0.48
RaraP11416 Fitm1-201ENSMUST00000022826 971 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
RaraP11416 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
RaraP11416 Ttc6-203ENSMUST00000172939 5782 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
RaraP11416 Utp18-201ENSMUST00000066888 2613 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
RaraP11416 Tmem57-201ENSMUST00000030628 3826 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
RaraP11416 Fbrsl1-202ENSMUST00000069483 4720 ntAPPRIS P2 TSL 5 BASIC18.04■□□□□ 0.48
RaraP11416 Lrriq3-201ENSMUST00000029833 2652 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 16.7 ms