Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Samd8-201ENSMUST00000022292 1574 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Lire1P11260 Serbp1-203ENSMUST00000203077 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Lire1P11260 Sh3yl1-201ENSMUST00000020997 1750 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
Lire1P11260 Pex14-201ENSMUST00000103217 2006 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Lire1P11260 Htr3a-201ENSMUST00000003826 2082 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Lire1P11260 Casc4-201ENSMUST00000078752 4215 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Lire1P11260 Hap1-201ENSMUST00000103124 2120 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
Lire1P11260 Eml5-210ENSMUST00000223282 7595 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
Lire1P11260 Rab11fip3-202ENSMUST00000120691 5103 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Lire1P11260 Rhot1-201ENSMUST00000017831 3029 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Lire1P11260 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Lire1P11260 Zkscan3-208ENSMUST00000224820 5398 ntBASIC15.81■□□□□ 0.12
Lire1P11260 Agpat3-203ENSMUST00000105388 3681 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
Lire1P11260 Vangl2-202ENSMUST00000111263 6528 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
Lire1P11260 Ccnd3-ps-201ENSMUST00000117963 881 ntBASIC15.81■□□□□ 0.12
Lire1P11260 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Lire1P11260 Gm8668-201ENSMUST00000120559 1447 ntBASIC15.81■□□□□ 0.12
Lire1P11260 Dlgap1-209ENSMUST00000140728 2173 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
Lire1P11260 Gata5-201ENSMUST00000015771 3277 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Lire1P11260 Rfesd-202ENSMUST00000167271 595 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
Lire1P11260 Sct-202ENSMUST00000167790 507 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
Lire1P11260 Ggnbp2-211ENSMUST00000168434 3056 ntAPPRIS ALT1 TSL 5 BASIC15.81■□□□□ 0.12
Lire1P11260 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Lire1P11260 Bin2-207ENSMUST00000183211 2036 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
Lire1P11260 Gm8969-201ENSMUST00000199694 526 ntBASIC15.81■□□□□ 0.12
Lire1P11260 Fxyd1-208ENSMUST00000205807 539 ntTSL 3 BASIC15.81■□□□□ 0.12
Lire1P11260 Gm30025-201ENSMUST00000218555 728 ntBASIC15.81■□□□□ 0.12
Lire1P11260 Sgpp1-202ENSMUST00000220285 3200 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Lire1P11260 Gpr137b-ps-203ENSMUST00000220758 1942 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Lire1P11260 Gm18025-201ENSMUST00000221733 862 ntBASIC15.81■□□□□ 0.12
Lire1P11260 AC156016.1-201ENSMUST00000227190 1035 ntBASIC15.81■□□□□ 0.12
Lire1P11260 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC15.81■□□□□ 0.12
Lire1P11260 Txndc11-201ENSMUST00000038424 3095 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Lire1P11260 Sct-201ENSMUST00000046156 534 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Lire1P11260 4933428G20Rik-201ENSMUST00000056955 1425 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Lire1P11260 Kcnj4-201ENSMUST00000057801 2148 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Lire1P11260 Cdh24-201ENSMUST00000067784 3489 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
Lire1P11260 Zar1-201ENSMUST00000073528 1429 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Lire1P11260 Lamc1-201ENSMUST00000027752 7622 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Lire1P11260 Fam78b-206ENSMUST00000190081 4666 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Lire1P11260 Parg-201ENSMUST00000022470 4413 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Lire1P11260 Elk4-202ENSMUST00000086556 4433 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Lire1P11260 Txndc5-201ENSMUST00000035988 2843 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
Lire1P11260 Fam109a-201ENSMUST00000056654 2368 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Lire1P11260 Senp3-202ENSMUST00000066760 2219 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Lire1P11260 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
Lire1P11260 Wnt8b-201ENSMUST00000041163 3376 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Lire1P11260 Fgfr1-214ENSMUST00000178276 4741 ntTSL 5 BASIC15.8■□□□□ 0.12
Lire1P11260 Gtpbp3-201ENSMUST00000007754 2800 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Lire1P11260 Gm13563-202ENSMUST00000150375 851 ntTSL 3 BASIC15.8■□□□□ 0.12
Lire1P11260 Serf1-205ENSMUST00000152286 465 ntTSL 3 BASIC15.8■□□□□ 0.12
Lire1P11260 Gm37939-201ENSMUST00000192309 447 ntTSL 5 BASIC15.8■□□□□ 0.12
Lire1P11260 Arhgef4-208ENSMUST00000211073 171 ntBASIC15.8■□□□□ 0.12
Lire1P11260 Limd2-202ENSMUST00000064545 798 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
Lire1P11260 Cldn24-201ENSMUST00000079639 663 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
Lire1P11260 Plppr5-201ENSMUST00000039564 4670 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Lire1P11260 Sptbn4-203ENSMUST00000108363 4724 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Lire1P11260 Sptbn4-204ENSMUST00000108364 4740 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Lire1P11260 Cyp2f2-201ENSMUST00000003100 1866 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Lire1P11260 Ptprs-211ENSMUST00000223859 5588 ntBASIC15.8■□□□□ 0.12
Lire1P11260 Pcbp1-201ENSMUST00000053015 1830 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
Lire1P11260 Kpna4-201ENSMUST00000029353 8819 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Lire1P11260 Ralgapa1-201ENSMUST00000085385 7901 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Lire1P11260 Elac2-203ENSMUST00000108697 2612 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
Lire1P11260 Grina-201ENSMUST00000023225 1693 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Lire1P11260 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Lire1P11260 Epb41l1-204ENSMUST00000103137 6490 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Lire1P11260 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Lire1P11260 Zfp746-201ENSMUST00000073124 3651 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
Lire1P11260 Ahctf1-201ENSMUST00000027768 8506 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Lire1P11260 Wasf2-201ENSMUST00000084241 5642 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Lire1P11260 Wnt4-201ENSMUST00000045747 4194 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Lire1P11260 Vsig10-201ENSMUST00000086464 2052 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
Lire1P11260 Gm11190-201ENSMUST00000132487 3414 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Lire1P11260 Psen2-201ENSMUST00000010753 2004 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Lire1P11260 Agbl5-209ENSMUST00000201225 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Lire1P11260 Pprc1-203ENSMUST00000111899 5246 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Lire1P11260 Trnt1-202ENSMUST00000113247 1934 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Lire1P11260 Gm38285-201ENSMUST00000192928 922 ntBASIC15.79■□□□□ 0.12
Lire1P11260 Timm23-208ENSMUST00000226683 750 ntBASIC15.79■□□□□ 0.12
Lire1P11260 Ppic-201ENSMUST00000025419 1286 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Lire1P11260 Gm10273-201ENSMUST00000092511 1126 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
Lire1P11260 Hnrnpul1-205ENSMUST00000206832 3784 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Lire1P11260 Gm16638-201ENSMUST00000148687 1865 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Lire1P11260 Nrg2-203ENSMUST00000115713 3001 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
Lire1P11260 Paqr7-201ENSMUST00000081525 2351 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Lire1P11260 Tnk1-202ENSMUST00000108626 1798 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Lire1P11260 Eva1a-201ENSMUST00000042974 1773 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Lire1P11260 Mycl-201ENSMUST00000030407 3501 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Lire1P11260 Map4k5-201ENSMUST00000049239 4452 ntAPPRIS ALT1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Lire1P11260 Dlgap4-205ENSMUST00000109567 4840 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
Lire1P11260 Gm26580-201ENSMUST00000181002 2095 ntTSL 5 BASIC15.79■□□□□ 0.12
Lire1P11260 Celf3-208ENSMUST00000198316 2505 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Lire1P11260 Dock4-201ENSMUST00000037488 8552 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Lire1P11260 C130074G19Rik-201ENSMUST00000048308 3035 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Lire1P11260 Ankdd1a-201ENSMUST00000061766 1443 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
Lire1P11260 Aldh7a1-206ENSMUST00000172734 1880 ntTSL 5 BASIC15.78■□□□□ 0.12
Lire1P11260 Sybu-201ENSMUST00000090057 3230 ntAPPRIS P4 TSL 1 (best) BASIC15.78■□□□□ 0.12
Lire1P11260 Nrip1-201ENSMUST00000054178 4529 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Lire1P11260 Tpd52l1-201ENSMUST00000000305 1308 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Retrieved 100 of 76,532 protein–RNA pairs in 20.6 ms