Protein–RNA interactions for Protein: G3X8Y1

Trim55, MCG19772, mousemouse

Predictions only

Length 545 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim55G3X8Y1 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
Trim55G3X8Y1 Gpd1l-204ENSMUST00000146623 4391 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim55G3X8Y1 Lrch3-210ENSMUST00000170201 2902 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim55G3X8Y1 Fam208b-201ENSMUST00000096069 8338 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim55G3X8Y1 A4galt-201ENSMUST00000049530 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim55G3X8Y1 Chst10-205ENSMUST00000193441 4999 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Trim55G3X8Y1 Snrpa-201ENSMUST00000080356 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim55G3X8Y1 Tra2a-201ENSMUST00000031841 1799 ntAPPRIS P3 TSL 5 BASIC17.25■□□□□ 0.35
Trim55G3X8Y1 Wnk1-223ENSMUST00000177761 11303 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
Trim55G3X8Y1 Myb-203ENSMUST00000188495 3693 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim55G3X8Y1 Fndc3a-201ENSMUST00000089017 6143 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim55G3X8Y1 Mzf1-202ENSMUST00000182087 2197 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Trim55G3X8Y1 Cnst-201ENSMUST00000040706 4709 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim55G3X8Y1 4931440P22Rik-202ENSMUST00000147424 2430 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Trim55G3X8Y1 Gm18336-201ENSMUST00000180787 2298 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
Trim55G3X8Y1 Slc39a11-203ENSMUST00000106633 2688 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trim55G3X8Y1 Errfi1-201ENSMUST00000030811 3043 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trim55G3X8Y1 Matk-201ENSMUST00000105328 2228 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trim55G3X8Y1 Sppl2b-201ENSMUST00000035597 2869 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trim55G3X8Y1 Il17rb-202ENSMUST00000122205 2094 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
Trim55G3X8Y1 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Trim55G3X8Y1 Cdkn2a-202ENSMUST00000107131 895 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trim55G3X8Y1 Pigp-204ENSMUST00000113914 912 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Trim55G3X8Y1 Gm12356-201ENSMUST00000122854 353 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Trim55G3X8Y1 Prr3-204ENSMUST00000172900 439 ntTSL 2 BASIC17.24■□□□□ 0.35
Trim55G3X8Y1 Rasl10b-201ENSMUST00000021022 996 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trim55G3X8Y1 Psmd8-201ENSMUST00000059642 1540 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trim55G3X8Y1 Stxbp3-205ENSMUST00000138552 1789 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Trim55G3X8Y1 Mief2-201ENSMUST00000018743 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trim55G3X8Y1 Epha10-201ENSMUST00000059343 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trim55G3X8Y1 Snx15-201ENSMUST00000025702 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trim55G3X8Y1 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trim55G3X8Y1 Scara3-201ENSMUST00000042046 3597 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trim55G3X8Y1 Gm38345-201ENSMUST00000192635 1748 ntBASIC17.24■□□□□ 0.35
Trim55G3X8Y1 Ndufaf1-202ENSMUST00000110801 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trim55G3X8Y1 Bnip2-202ENSMUST00000085393 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trim55G3X8Y1 Prcc-201ENSMUST00000005015 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trim55G3X8Y1 Vwa5b2-203ENSMUST00000100074 2512 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim55G3X8Y1 Ebf3-208ENSMUST00000210774 2994 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Trim55G3X8Y1 Slc25a32-201ENSMUST00000022908 5905 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim55G3X8Y1 Racgap1-213ENSMUST00000171702 3052 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim55G3X8Y1 Tmcc3-201ENSMUST00000065060 5530 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim55G3X8Y1 Gm37563-201ENSMUST00000192580 1513 ntBASIC17.23■□□□□ 0.35
Trim55G3X8Y1 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim55G3X8Y1 Dyx1c1-201ENSMUST00000034734 1975 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim55G3X8Y1 Thap8-201ENSMUST00000014072 1182 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
Trim55G3X8Y1 Kiss1-204ENSMUST00000194044 583 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
Trim55G3X8Y1 Gm21168-201ENSMUST00000199646 1096 ntBASIC17.23■□□□□ 0.35
Trim55G3X8Y1 Hgfac-206ENSMUST00000202573 434 ntTSL 5 BASIC17.23■□□□□ 0.35
Trim55G3X8Y1 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC17.23■□□□□ 0.35
Trim55G3X8Y1 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim55G3X8Y1 Pop7-201ENSMUST00000031728 881 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim55G3X8Y1 Fancm-201ENSMUST00000058889 7775 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim55G3X8Y1 Klc1-203ENSMUST00000120544 2261 ntAPPRIS ALT1 TSL 5 BASIC17.23■□□□□ 0.35
Trim55G3X8Y1 Trim7-202ENSMUST00000109213 2356 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Trim55G3X8Y1 Nfe2l2-201ENSMUST00000102672 2475 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim55G3X8Y1 Tcf25-205ENSMUST00000212470 2572 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Trim55G3X8Y1 Endod1-201ENSMUST00000167549 4470 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim55G3X8Y1 Naa50-203ENSMUST00000159514 3756 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Trim55G3X8Y1 Itgb1bp1-201ENSMUST00000076260 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim55G3X8Y1 Paip2-203ENSMUST00000115735 1521 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
Trim55G3X8Y1 Mphosph8-201ENSMUST00000116468 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim55G3X8Y1 Rbm26-203ENSMUST00000163499 4212 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Trim55G3X8Y1 Reps2-202ENSMUST00000112334 7675 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim55G3X8Y1 Col7a1-201ENSMUST00000026740 9198 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim55G3X8Y1 Gm44544-201ENSMUST00000207052 1844 ntBASIC17.22■□□□□ 0.35
Trim55G3X8Y1 Six4-201ENSMUST00000043208 6402 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim55G3X8Y1 AC154412.1-201ENSMUST00000226540 2786 ntBASIC17.22■□□□□ 0.35
Trim55G3X8Y1 Taf3-203ENSMUST00000114907 695 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Trim55G3X8Y1 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC17.22■□□□□ 0.35
Trim55G3X8Y1 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim55G3X8Y1 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim55G3X8Y1 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Trim55G3X8Y1 Fdx1-201ENSMUST00000034552 875 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim55G3X8Y1 Podn-203ENSMUST00000106709 3170 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim55G3X8Y1 4833418N02Rik-202ENSMUST00000146560 1495 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Trim55G3X8Y1 Gas2l2-201ENSMUST00000052521 2610 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim55G3X8Y1 Tnfaip2-201ENSMUST00000102745 3762 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim55G3X8Y1 Wdfy3-206ENSMUST00000174698 3858 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Trim55G3X8Y1 C2cd2l-206ENSMUST00000214602 2808 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Trim55G3X8Y1 Amz2-202ENSMUST00000092500 2816 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim55G3X8Y1 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim55G3X8Y1 Mff-212ENSMUST00000162003 2087 ntTSL 5 BASIC17.22■□□□□ 0.35
Trim55G3X8Y1 Snx1-201ENSMUST00000034946 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim55G3X8Y1 Crtc3-201ENSMUST00000122255 5115 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim55G3X8Y1 Serbp1-211ENSMUST00000204293 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim55G3X8Y1 Abcb4-201ENSMUST00000003717 4079 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim55G3X8Y1 Usp43-201ENSMUST00000021288 4462 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim55G3X8Y1 Tfdp2-209ENSMUST00000188750 1713 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
Trim55G3X8Y1 Zfp316-202ENSMUST00000161448 6891 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim55G3X8Y1 Spcs2-201ENSMUST00000036274 2909 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim55G3X8Y1 Pskh1-201ENSMUST00000049699 3255 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim55G3X8Y1 Zfp326-201ENSMUST00000031227 2667 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim55G3X8Y1 Atg5-201ENSMUST00000039286 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim55G3X8Y1 Vstm2b-203ENSMUST00000205845 1455 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim55G3X8Y1 Rnf139-201ENSMUST00000036904 4348 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim55G3X8Y1 Paip2-204ENSMUST00000115736 857 ntAPPRIS P1 TSL 3 BASIC17.21■□□□□ 0.35
Trim55G3X8Y1 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC17.21■□□□□ 0.35
Trim55G3X8Y1 Slc35b2-207ENSMUST00000226086 850 ntBASIC17.21■□□□□ 0.35
Trim55G3X8Y1 Nup98-205ENSMUST00000211022 3132 ntTSL 2 BASIC17.21■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 37.5 ms