Protein–RNA interactions for Protein: F7BJK1

Pcdh1, Protocadherin 1 (Fragment), mousemouse

Predictions only

Length 1,077 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdh1F7BJK1 B4galt3-205ENSMUST00000126699 1758 ntTSL 5 BASIC15.08■□□□□ 0.01
Pcdh1F7BJK1 Gabbr1-202ENSMUST00000172789 1460 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
Pcdh1F7BJK1 Gm45623-201ENSMUST00000210744 1457 ntAPPRIS P1 BASIC15.08■□□□□ 0.01
Pcdh1F7BJK1 Prss54-205ENSMUST00000213096 1501 ntAPPRIS P3 TSL 5 BASIC15.08■□□□□ 0.01
Pcdh1F7BJK1 Slc6a17-208ENSMUST00000169449 6322 ntAPPRIS ALT1 TSL 1 (best) BASIC15.08■□□□□ 0
Pcdh1F7BJK1 Slc6a17-201ENSMUST00000029499 6308 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
Pcdh1F7BJK1 Polr2c-201ENSMUST00000109521 1580 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Pcdh1F7BJK1 2210016F16Rik-201ENSMUST00000022032 3051 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Pcdh1F7BJK1 Gm13158-201ENSMUST00000122007 736 ntBASIC15.08■□□□□ 0
Pcdh1F7BJK1 Gm6270-201ENSMUST00000132731 559 ntTSL 5 BASIC15.08■□□□□ 0
Pcdh1F7BJK1 E030044B06Rik-201ENSMUST00000181195 1266 ntTSL 1 (best) BASIC15.08■□□□□ 0
Pcdh1F7BJK1 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC15.08■□□□□ 0
Pcdh1F7BJK1 Sohlh1-201ENSMUST00000076989 1289 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Pcdh1F7BJK1 Zfp384-208ENSMUST00000112428 3132 ntTSL 1 (best) BASIC15.08■□□□□ 0
Pcdh1F7BJK1 Nipa2-201ENSMUST00000032635 3197 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Pcdh1F7BJK1 Hmga1-202ENSMUST00000117254 1328 ntAPPRIS P3 TSL 2 BASIC15.08■□□□□ 0
Pcdh1F7BJK1 Myo9b-206ENSMUST00000212935 6316 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
Pcdh1F7BJK1 Mars-201ENSMUST00000037290 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Pcdh1F7BJK1 Dhrs7-201ENSMUST00000021512 1385 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Pcdh1F7BJK1 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
Pcdh1F7BJK1 Abl1-202ENSMUST00000075759 6327 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
Pcdh1F7BJK1 Prkar2b-202ENSMUST00000036497 3378 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Pcdh1F7BJK1 Chic2-201ENSMUST00000075452 9699 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Pcdh1F7BJK1 Chn1-209ENSMUST00000166199 3876 ntTSL 1 (best) BASIC15.07■□□□□ 0
Pcdh1F7BJK1 Cdk10-201ENSMUST00000036880 1642 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Pcdh1F7BJK1 Mef2d-201ENSMUST00000001455 5401 ntTSL 1 (best) BASIC15.07■□□□□ 0
Pcdh1F7BJK1 Gnb1-202ENSMUST00000105616 3088 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Pcdh1F7BJK1 Gm9867-201ENSMUST00000192212 2647 ntBASIC15.07■□□□□ 0
Pcdh1F7BJK1 Krt13-201ENSMUST00000007275 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Pcdh1F7BJK1 Mydgf-201ENSMUST00000019723 1710 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Pcdh1F7BJK1 Kif17-204ENSMUST00000105821 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Pcdh1F7BJK1 March3-202ENSMUST00000102912 1754 ntTSL 1 (best) BASIC15.07■□□□□ 0
Pcdh1F7BJK1 Simc1-202ENSMUST00000121401 4819 ntAPPRIS P2 TSL 5 BASIC15.07■□□□□ 0
Pcdh1F7BJK1 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Pcdh1F7BJK1 Tomm6-201ENSMUST00000113301 594 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
Pcdh1F7BJK1 Gm12441-201ENSMUST00000121806 588 ntBASIC15.07■□□□□ 0
Pcdh1F7BJK1 3110082J24Rik-201ENSMUST00000127749 327 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
Pcdh1F7BJK1 Prss16-204ENSMUST00000150547 1159 ntTSL 3 BASIC15.07■□□□□ 0
Pcdh1F7BJK1 Cox16-207ENSMUST00000169124 685 ntTSL 2 BASIC15.07■□□□□ 0
Pcdh1F7BJK1 Gm17661-201ENSMUST00000170317 270 ntBASIC15.07■□□□□ 0
Pcdh1F7BJK1 Gm10517-202ENSMUST00000192970 758 ntBASIC15.07■□□□□ 0
Pcdh1F7BJK1 Gabarapl1-202ENSMUST00000204487 902 ntTSL 1 (best) BASIC15.07■□□□□ 0
Pcdh1F7BJK1 Dlgap4-212ENSMUST00000169464 4851 ntTSL 5 BASIC15.07■□□□□ 0
Pcdh1F7BJK1 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC15.07■□□□□ 0
Pcdh1F7BJK1 Pgap3-202ENSMUST00000090827 2419 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Pcdh1F7BJK1 Lrg1-201ENSMUST00000041357 1351 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Pcdh1F7BJK1 Fam181a-201ENSMUST00000179363 1406 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
Pcdh1F7BJK1 Fads3-201ENSMUST00000115995 3269 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Pcdh1F7BJK1 Mta1-203ENSMUST00000109723 2790 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
Pcdh1F7BJK1 Mta1-204ENSMUST00000109726 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
Pcdh1F7BJK1 Mta1-205ENSMUST00000109727 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Pcdh1F7BJK1 Prkag2-203ENSMUST00000114975 2205 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Pcdh1F7BJK1 Gabpa-201ENSMUST00000009120 4987 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Pcdh1F7BJK1 Kctd6-202ENSMUST00000170111 3052 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Pcdh1F7BJK1 Carmn-201ENSMUST00000181155 1778 ntTSL 2 BASIC15.06■□□□□ 0
Pcdh1F7BJK1 Sgsm2-202ENSMUST00000081799 4873 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
Pcdh1F7BJK1 Clip2-202ENSMUST00000100647 4994 ntAPPRIS P4 TSL 1 (best) BASIC15.06■□□□□ 0
Pcdh1F7BJK1 AK157302-201ENSMUST00000104942 1924 ntAPPRIS P1 BASIC15.06■□□□□ 0
Pcdh1F7BJK1 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC15.06■□□□□ 0
Pcdh1F7BJK1 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC15.06■□□□□ 0
Pcdh1F7BJK1 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC15.06■□□□□ 0
Pcdh1F7BJK1 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC15.06■□□□□ 0
Pcdh1F7BJK1 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC15.06■□□□□ 0
Pcdh1F7BJK1 Gm11273-201ENSMUST00000044043 390 ntAPPRIS P1 BASIC15.06■□□□□ 0
Pcdh1F7BJK1 Tssk6-201ENSMUST00000050373 1335 ntAPPRIS P1 BASIC15.06■□□□□ 0
Pcdh1F7BJK1 Trim28-201ENSMUST00000005705 3245 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Pcdh1F7BJK1 Rcc1-203ENSMUST00000105951 2326 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
Pcdh1F7BJK1 Xrcc1-205ENSMUST00000205573 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Pcdh1F7BJK1 K230015D01Rik-201ENSMUST00000211969 1516 ntBASIC15.06■□□□□ 0
Pcdh1F7BJK1 Prss53-202ENSMUST00000205300 1662 ntTSL 1 (best) BASIC15.06■□□□□ 0
Pcdh1F7BJK1 Taf6l-213ENSMUST00000189739 1794 ntTSL 5 BASIC15.06■□□□□ 0
Pcdh1F7BJK1 Acap3-201ENSMUST00000079031 4301 ntTSL 5 BASIC15.06■□□□□ 0
Pcdh1F7BJK1 Slc1a6-201ENSMUST00000005490 2029 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Pcdh1F7BJK1 Zic5-201ENSMUST00000039118 4767 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Pcdh1F7BJK1 Lrrfip1-212ENSMUST00000189617 2155 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ 0
Pcdh1F7BJK1 Dbnl-202ENSMUST00000102928 2295 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ 0
Pcdh1F7BJK1 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC15.05■□□□□ -0
Pcdh1F7BJK1 Gm44899-201ENSMUST00000207451 391 ntTSL 3 BASIC15.05■□□□□ -0
Pcdh1F7BJK1 Tspan4-201ENSMUST00000026585 1466 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Pcdh1F7BJK1 Bmt2-202ENSMUST00000203078 4462 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
Pcdh1F7BJK1 Casp3-201ENSMUST00000093517 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Pcdh1F7BJK1 Gm43072-201ENSMUST00000200283 1671 ntBASIC15.05■□□□□ -0
Pcdh1F7BJK1 Phax-201ENSMUST00000008445 1942 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
Pcdh1F7BJK1 Prss53-201ENSMUST00000121394 2134 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Pcdh1F7BJK1 AU022751-202ENSMUST00000117544 2201 ntAPPRIS P4 BASIC15.05■□□□□ -0
Pcdh1F7BJK1 Sbk2-202ENSMUST00000182214 2236 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
Pcdh1F7BJK1 Kctd15-203ENSMUST00000108070 2409 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Pcdh1F7BJK1 Nepro-201ENSMUST00000048788 2866 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Pcdh1F7BJK1 Sppl3-201ENSMUST00000031530 3204 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Pcdh1F7BJK1 Cdh2-201ENSMUST00000025166 4843 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Pcdh1F7BJK1 Naa35-201ENSMUST00000022038 3793 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Pcdh1F7BJK1 Ranbp9-201ENSMUST00000144326 3371 ntAPPRIS P2 TSL 5 BASIC15.04■□□□□ -0
Pcdh1F7BJK1 Pskh1-201ENSMUST00000049699 3255 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Pcdh1F7BJK1 Pten-201ENSMUST00000013807 8292 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Pcdh1F7BJK1 Csnk1e-201ENSMUST00000117786 2694 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Pcdh1F7BJK1 Spg21-201ENSMUST00000034955 2680 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Pcdh1F7BJK1 Celf3-208ENSMUST00000198316 2505 ntTSL 1 (best) BASIC15.04■□□□□ -0
Pcdh1F7BJK1 Drd2-201ENSMUST00000075764 2547 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Pcdh1F7BJK1 Rasgef1b-205ENSMUST00000161148 2430 ntTSL 1 (best) BASIC15.04■□□□□ -0
Pcdh1F7BJK1 Rtp2-201ENSMUST00000061030 2421 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Retrieved 100 of 76,532 protein–RNA pairs in 34.3 ms