Protein–RNA interactions for Protein: A0A140LI48

Pcdhgb8, Protocadherin gamma subfamily B, 8, mousemouse

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhgb8A0A140LI48 Prdm12-201ENSMUST00000113470 2471 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Pcdhgb8A0A140LI48 Clvs2-203ENSMUST00000160299 2610 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Pcdhgb8A0A140LI48 Bmp8a-202ENSMUST00000102641 1917 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
Pcdhgb8A0A140LI48 Txndc5-201ENSMUST00000035988 2843 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
Pcdhgb8A0A140LI48 Ppp2r1b-205ENSMUST00000175640 1523 ntTSL 5 BASIC15.13■□□□□ 0.01
Pcdhgb8A0A140LI48 Sptbn4-203ENSMUST00000108363 4724 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Pcdhgb8A0A140LI48 Sptbn4-204ENSMUST00000108364 4740 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Pcdhgb8A0A140LI48 Map4k5-201ENSMUST00000049239 4452 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Pcdhgb8A0A140LI48 Atxn7l2-202ENSMUST00000117409 2321 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
Pcdhgb8A0A140LI48 Smim10l1-204ENSMUST00000191462 574 ntTSL 3 BASIC15.13■□□□□ 0.01
Pcdhgb8A0A140LI48 Rwdd1-201ENSMUST00000019917 1090 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Pcdhgb8A0A140LI48 Gm43183-201ENSMUST00000200632 547 ntBASIC15.13■□□□□ 0.01
Pcdhgb8A0A140LI48 Idnk-204ENSMUST00000226010 1898 ntBASIC15.13■□□□□ 0.01
Pcdhgb8A0A140LI48 Uts2r-201ENSMUST00000039044 1703 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
Pcdhgb8A0A140LI48 App-203ENSMUST00000226801 3299 ntAPPRIS ALT2 BASIC15.13■□□□□ 0.01
Pcdhgb8A0A140LI48 Dmtn-201ENSMUST00000022694 5418 ntAPPRIS ALT1 TSL 5 BASIC15.13■□□□□ 0.01
Pcdhgb8A0A140LI48 Dbn1-202ENSMUST00000109921 2378 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Pcdhgb8A0A140LI48 Phf7-201ENSMUST00000022459 2084 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Pcdhgb8A0A140LI48 Sash1-201ENSMUST00000015449 7183 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Pcdhgb8A0A140LI48 Fgfr2-215ENSMUST00000122054 3323 ntAPPRIS P4 TSL 1 (best) BASIC15.13■□□□□ 0.01
Pcdhgb8A0A140LI48 Gm26860-201ENSMUST00000181674 1489 ntTSL 5 BASIC15.13■□□□□ 0.01
Pcdhgb8A0A140LI48 Adrb3-202ENSMUST00000117565 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Pcdhgb8A0A140LI48 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Pcdhgb8A0A140LI48 Acbd4-203ENSMUST00000107040 1959 ntTSL 2 BASIC15.13■□□□□ 0.01
Pcdhgb8A0A140LI48 Hr-201ENSMUST00000022691 5487 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Pcdhgb8A0A140LI48 Ipo8-201ENSMUST00000048418 5360 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Pcdhgb8A0A140LI48 Trpc1-204ENSMUST00000189137 4559 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
Pcdhgb8A0A140LI48 Ncmap-205ENSMUST00000105860 2000 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Pcdhgb8A0A140LI48 Specc1-210ENSMUST00000201723 2690 ntTSL 5 BASIC15.12■□□□□ 0.01
Pcdhgb8A0A140LI48 Tspyl2-201ENSMUST00000044509 2696 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Pcdhgb8A0A140LI48 Dsg2-201ENSMUST00000059787 5766 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Pcdhgb8A0A140LI48 Nsmf-207ENSMUST00000116574 2863 ntTSL 5 BASIC15.12■□□□□ 0.01
Pcdhgb8A0A140LI48 Rae1-201ENSMUST00000029013 1742 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Pcdhgb8A0A140LI48 Tmed5-204ENSMUST00000118036 1045 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Pcdhgb8A0A140LI48 Actr8-201ENSMUST00000016115 2119 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Pcdhgb8A0A140LI48 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC15.12■□□□□ 0.01
Pcdhgb8A0A140LI48 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC15.12■□□□□ 0.01
Pcdhgb8A0A140LI48 Uchl1-201ENSMUST00000031131 1177 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Pcdhgb8A0A140LI48 1700020N01Rik-201ENSMUST00000057341 1062 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Pcdhgb8A0A140LI48 Rccd1-202ENSMUST00000121882 2324 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Pcdhgb8A0A140LI48 Gnal-201ENSMUST00000025402 5616 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Pcdhgb8A0A140LI48 9530080O11Rik-201ENSMUST00000137239 1475 ntTSL 2 BASIC15.12■□□□□ 0.01
Pcdhgb8A0A140LI48 Prss56-201ENSMUST00000044533 2180 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Pcdhgb8A0A140LI48 Nox4-202ENSMUST00000068829 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Pcdhgb8A0A140LI48 Lrriq3-201ENSMUST00000029833 2652 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Pcdhgb8A0A140LI48 Lpin2-213ENSMUST00000156570 1586 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Pcdhgb8A0A140LI48 H2-DMa-201ENSMUST00000042121 1555 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Pcdhgb8A0A140LI48 Trappc5-201ENSMUST00000044857 2546 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Pcdhgb8A0A140LI48 P2rx4-201ENSMUST00000031429 2702 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Pcdhgb8A0A140LI48 Nkpd1-202ENSMUST00000207576 2916 ntAPPRIS P2 TSL 5 BASIC15.11■□□□□ 0.01
Pcdhgb8A0A140LI48 Gramd4-204ENSMUST00000138134 4292 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Pcdhgb8A0A140LI48 Gm6583-201ENSMUST00000051117 2233 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
Pcdhgb8A0A140LI48 Eif4g1-202ENSMUST00000073840 5394 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
Pcdhgb8A0A140LI48 Naa10-205ENSMUST00000114390 797 ntTSL 5 BASIC15.11■□□□□ 0.01
Pcdhgb8A0A140LI48 Hmga1-205ENSMUST00000118599 529 ntAPPRIS P3 TSL 3 BASIC15.11■□□□□ 0.01
Pcdhgb8A0A140LI48 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC15.11■□□□□ 0.01
Pcdhgb8A0A140LI48 Mir5122-201ENSMUST00000175004 89 ntBASIC15.11■□□□□ 0.01
Pcdhgb8A0A140LI48 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
Pcdhgb8A0A140LI48 Mir7071-201ENSMUST00000184847 69 ntBASIC15.11■□□□□ 0.01
Pcdhgb8A0A140LI48 Gm37055-201ENSMUST00000191866 133 ntBASIC15.11■□□□□ 0.01
Pcdhgb8A0A140LI48 Gm45337-201ENSMUST00000210537 1267 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
Pcdhgb8A0A140LI48 Lat-201ENSMUST00000032997 1235 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Pcdhgb8A0A140LI48 Gm10549-201ENSMUST00000097634 450 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
Pcdhgb8A0A140LI48 Ruvbl1-201ENSMUST00000032165 1675 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Pcdhgb8A0A140LI48 Rnpep-202ENSMUST00000077340 2288 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Pcdhgb8A0A140LI48 Ofd1-201ENSMUST00000049501 4453 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Pcdhgb8A0A140LI48 Atoh1-201ENSMUST00000101351 2121 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
Pcdhgb8A0A140LI48 Zfp382-201ENSMUST00000098596 2117 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Pcdhgb8A0A140LI48 Fdxr-201ENSMUST00000021078 1948 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Pcdhgb8A0A140LI48 Srpr-201ENSMUST00000034541 2993 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Pcdhgb8A0A140LI48 Agtr1a-201ENSMUST00000066412 2199 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Pcdhgb8A0A140LI48 Samd8-201ENSMUST00000022292 1574 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Pcdhgb8A0A140LI48 Slc35g2-201ENSMUST00000093792 1590 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
Pcdhgb8A0A140LI48 Zkscan3-208ENSMUST00000224820 5398 ntBASIC15.11■□□□□ 0.01
Pcdhgb8A0A140LI48 Sox4-201ENSMUST00000067230 4795 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
Pcdhgb8A0A140LI48 Six3os1-212ENSMUST00000177220 5601 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Pcdhgb8A0A140LI48 Gm13327-201ENSMUST00000133391 2741 ntTSL 5 BASIC15.1■□□□□ 0.01
Pcdhgb8A0A140LI48 Sphk1-206ENSMUST00000106388 1891 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
Pcdhgb8A0A140LI48 Nrsn1-204ENSMUST00000167305 1891 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Pcdhgb8A0A140LI48 Ctnna2-204ENSMUST00000160894 4162 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Pcdhgb8A0A140LI48 Racgap1-213ENSMUST00000171702 3052 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Pcdhgb8A0A140LI48 Zbtb45-201ENSMUST00000051390 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Pcdhgb8A0A140LI48 Pds5b-208ENSMUST00000202170 6598 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
Pcdhgb8A0A140LI48 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC15.1■□□□□ 0.01
Pcdhgb8A0A140LI48 B430219N15Rik-201ENSMUST00000147230 835 ntTSL 2 BASIC15.1■□□□□ 0.01
Pcdhgb8A0A140LI48 Zmynd19-202ENSMUST00000148042 1103 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Pcdhgb8A0A140LI48 Mrpl13-205ENSMUST00000172387 1223 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Pcdhgb8A0A140LI48 AL672049.1-201ENSMUST00000197943 91 ntBASIC15.1■□□□□ 0.01
Pcdhgb8A0A140LI48 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC15.1■□□□□ 0.01
Pcdhgb8A0A140LI48 Tomm20-202ENSMUST00000212771 458 ntTSL 2 BASIC15.1■□□□□ 0.01
Pcdhgb8A0A140LI48 Mef2d-203ENSMUST00000107559 1791 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Pcdhgb8A0A140LI48 Nptx2-201ENSMUST00000071782 2536 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Pcdhgb8A0A140LI48 Agpat3-202ENSMUST00000105387 1316 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Pcdhgb8A0A140LI48 Sh3bp2-203ENSMUST00000118545 3034 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Pcdhgb8A0A140LI48 Rhpn2-201ENSMUST00000032705 3508 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Pcdhgb8A0A140LI48 Gm10649-203ENSMUST00000148066 1812 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Pcdhgb8A0A140LI48 Tfeb-204ENSMUST00000113288 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Pcdhgb8A0A140LI48 Slc25a39-202ENSMUST00000107098 1606 ntAPPRIS ALT1 TSL 5 BASIC15.1■□□□□ 0.01
Pcdhgb8A0A140LI48 Med7-209ENSMUST00000170928 2390 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Pcdhgb8A0A140LI48 Gm28372-201ENSMUST00000188900 1876 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 20.9 ms