Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Gm28529-202ENSMUST00000189675 670 ntTSL 2 BASIC25.27■■□□□ 1.64
Upf3aQ3ULJ3 Stbd1-202ENSMUST00000200941 523 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
Upf3aQ3ULJ3 Crct1-201ENSMUST00000029521 718 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
Upf3aQ3ULJ3 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC25.27■■□□□ 1.64
Upf3aQ3ULJ3 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC25.27■■□□□ 1.64
Upf3aQ3ULJ3 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
Upf3aQ3ULJ3 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
Upf3aQ3ULJ3 Gm44957-202ENSMUST00000205137 448 ntTSL 3 BASIC25.25■■□□□ 1.63
Upf3aQ3ULJ3 AC154454.1-201ENSMUST00000225253 216 ntBASIC25.25■■□□□ 1.63
Upf3aQ3ULJ3 Gm4799-201ENSMUST00000095396 657 ntBASIC25.25■■□□□ 1.63
Upf3aQ3ULJ3 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC25.24■■□□□ 1.63
Upf3aQ3ULJ3 Gm9905-201ENSMUST00000065740 1845 ntBASIC25.24■■□□□ 1.63
Upf3aQ3ULJ3 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC25.24■■□□□ 1.63
Upf3aQ3ULJ3 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC25.24■■□□□ 1.63
Upf3aQ3ULJ3 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
Upf3aQ3ULJ3 Gadd45a-201ENSMUST00000043098 1223 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
Upf3aQ3ULJ3 Gm37136-201ENSMUST00000194368 194 ntBASIC25.22■■□□□ 1.63
Upf3aQ3ULJ3 Gm9806-201ENSMUST00000051080 552 ntBASIC25.22■■□□□ 1.63
Upf3aQ3ULJ3 A930035D04Rik-201ENSMUST00000064013 543 ntBASIC25.22■■□□□ 1.63
Upf3aQ3ULJ3 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
Upf3aQ3ULJ3 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC25.21■■□□□ 1.63
Upf3aQ3ULJ3 Kdf1-202ENSMUST00000105901 1699 ntAPPRIS P2 TSL 1 (best) BASIC25.21■■□□□ 1.63
Upf3aQ3ULJ3 Mir3960-201ENSMUST00000198213 73 ntBASIC25.21■■□□□ 1.63
Upf3aQ3ULJ3 Pkd1-207ENSMUST00000228550 1050 ntBASIC25.21■■□□□ 1.63
Upf3aQ3ULJ3 Dazap1-201ENSMUST00000092305 1994 ntAPPRIS ALT1 TSL 1 (best) BASIC25.21■■□□□ 1.63
Upf3aQ3ULJ3 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC25.2■■□□□ 1.63
Upf3aQ3ULJ3 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.63
Upf3aQ3ULJ3 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
Upf3aQ3ULJ3 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC25.19■■□□□ 1.62
Upf3aQ3ULJ3 Gm11687-201ENSMUST00000118911 886 ntBASIC25.19■■□□□ 1.62
Upf3aQ3ULJ3 E030037K01Rik-201ENSMUST00000180928 1756 ntBASIC25.18■■□□□ 1.62
Upf3aQ3ULJ3 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC25.18■■□□□ 1.62
Upf3aQ3ULJ3 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC25.18■■□□□ 1.62
Upf3aQ3ULJ3 Gm45051-201ENSMUST00000206838 963 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
Upf3aQ3ULJ3 Rnaseh2c-201ENSMUST00000025864 1126 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
Upf3aQ3ULJ3 Gm45364-201ENSMUST00000210883 159 ntBASIC25.16■■□□□ 1.62
Upf3aQ3ULJ3 Gm16437-201ENSMUST00000025669 507 ntBASIC25.15■■□□□ 1.62
Upf3aQ3ULJ3 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
Upf3aQ3ULJ3 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
Upf3aQ3ULJ3 Gm8098-201ENSMUST00000146985 1499 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
Upf3aQ3ULJ3 Rarres1-201ENSMUST00000054825 1325 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
Upf3aQ3ULJ3 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC25.14■■□□□ 1.62
Upf3aQ3ULJ3 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC25.14■■□□□ 1.62
Upf3aQ3ULJ3 Rps2-ps13-201ENSMUST00000117295 882 ntBASIC25.12■■□□□ 1.61
Upf3aQ3ULJ3 Gm12366-201ENSMUST00000121722 873 ntBASIC25.12■■□□□ 1.61
Upf3aQ3ULJ3 Rps2-206ENSMUST00000146867 962 ntTSL 5 BASIC25.12■■□□□ 1.61
Upf3aQ3ULJ3 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC25.12■■□□□ 1.61
Upf3aQ3ULJ3 Rps2-ps10-201ENSMUST00000076842 879 ntBASIC25.12■■□□□ 1.61
Upf3aQ3ULJ3 Gm5786-201ENSMUST00000085368 882 ntBASIC25.12■■□□□ 1.61
Upf3aQ3ULJ3 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC25.11■■□□□ 1.61
Upf3aQ3ULJ3 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC25.11■■□□□ 1.61
Upf3aQ3ULJ3 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC25.11■■□□□ 1.61
Upf3aQ3ULJ3 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
Upf3aQ3ULJ3 Smagp-201ENSMUST00000066068 1132 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
Upf3aQ3ULJ3 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC25.1■■□□□ 1.61
Upf3aQ3ULJ3 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
Upf3aQ3ULJ3 Crlf2-201ENSMUST00000044579 1323 ntAPPRIS P3 TSL 1 (best) BASIC25.1■■□□□ 1.61
Upf3aQ3ULJ3 Gm13889-201ENSMUST00000099689 1386 ntBASIC25.08■■□□□ 1.61
Upf3aQ3ULJ3 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
Upf3aQ3ULJ3 Gli3-204ENSMUST00000141194 466 ntTSL 2 BASIC25.08■■□□□ 1.61
Upf3aQ3ULJ3 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
Upf3aQ3ULJ3 1700020L24Rik-201ENSMUST00000037378 949 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
Upf3aQ3ULJ3 Zxda-201ENSMUST00000117281 2621 ntBASIC25.07■■□□□ 1.6
Upf3aQ3ULJ3 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
Upf3aQ3ULJ3 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC25.07■■□□□ 1.6
Upf3aQ3ULJ3 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
Upf3aQ3ULJ3 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
Upf3aQ3ULJ3 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
Upf3aQ3ULJ3 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC25.05■■□□□ 1.6
Upf3aQ3ULJ3 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC25.04■■□□□ 1.6
Upf3aQ3ULJ3 Klhl15-202ENSMUST00000113908 1235 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
Upf3aQ3ULJ3 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
Upf3aQ3ULJ3 AC153366.1-201ENSMUST00000218132 1056 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
Upf3aQ3ULJ3 Klhl15-203ENSMUST00000113911 1227 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
Upf3aQ3ULJ3 Mpped1-208ENSMUST00000163723 1064 ntTSL 5 BASIC25.03■■□□□ 1.6
Upf3aQ3ULJ3 Gm12818-201ENSMUST00000117562 1349 ntBASIC25.03■■□□□ 1.6
Upf3aQ3ULJ3 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
Upf3aQ3ULJ3 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
Upf3aQ3ULJ3 Tceal6-201ENSMUST00000033783 1114 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
Upf3aQ3ULJ3 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC25.01■■□□□ 1.59
Upf3aQ3ULJ3 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC25■■□□□ 1.59
Upf3aQ3ULJ3 AC153504.1-201ENSMUST00000218379 2290 ntBASIC25■■□□□ 1.59
Upf3aQ3ULJ3 Pde6d-201ENSMUST00000027444 1159 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
Upf3aQ3ULJ3 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC25■■□□□ 1.59
Upf3aQ3ULJ3 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
Upf3aQ3ULJ3 Gm40983-202ENSMUST00000222598 1198 ntTSL 5 BASIC24.99■■□□□ 1.59
Upf3aQ3ULJ3 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
Upf3aQ3ULJ3 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC24.97■■□□□ 1.59
Upf3aQ3ULJ3 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC24.97■■□□□ 1.59
Upf3aQ3ULJ3 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC24.97■■□□□ 1.59
Upf3aQ3ULJ3 Hmox2-202ENSMUST00000118885 1392 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
Upf3aQ3ULJ3 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.59
Upf3aQ3ULJ3 Gm43573-201ENSMUST00000196445 570 ntTSL 5 BASIC24.95■■□□□ 1.58
Upf3aQ3ULJ3 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC24.94■■□□□ 1.58
Upf3aQ3ULJ3 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC24.94■■□□□ 1.58
Upf3aQ3ULJ3 Hibadh-201ENSMUST00000031788 1825 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
Upf3aQ3ULJ3 Psmg1-201ENSMUST00000023630 1044 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
Upf3aQ3ULJ3 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
Upf3aQ3ULJ3 Mpp6-202ENSMUST00000036236 2161 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
Upf3aQ3ULJ3 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
Retrieved 100 of 76,532 protein–RNA pairs in 58.7 ms