Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 AC167019.3-201ENSMUST00000228225 1266 ntBASIC22.41■■□□□ 1.18
Sox3P53784 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Sox3P53784 Eva1b-202ENSMUST00000106150 1144 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
Sox3P53784 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC22.39■■□□□ 1.17
Sox3P53784 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
Sox3P53784 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC22.39■■□□□ 1.17
Sox3P53784 Acvr2b-202ENSMUST00000165044 2093 ntTSL 2 BASIC22.38■■□□□ 1.17
Sox3P53784 Unc119-203ENSMUST00000108295 1371 ntTSL 3 BASIC22.38■■□□□ 1.17
Sox3P53784 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC22.38■■□□□ 1.17
Sox3P53784 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Sox3P53784 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC22.37■■□□□ 1.17
Sox3P53784 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC22.37■■□□□ 1.17
Sox3P53784 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
Sox3P53784 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Sox3P53784 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC22.36■■□□□ 1.17
Sox3P53784 Klhl35-201ENSMUST00000037359 1954 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Sox3P53784 Ywhaq-202ENSMUST00000103002 2110 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Sox3P53784 AC125444.1-201ENSMUST00000223536 639 ntAPPRIS P1 BASIC22.35■■□□□ 1.17
Sox3P53784 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC22.34■■□□□ 1.17
Sox3P53784 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC22.34■■□□□ 1.17
Sox3P53784 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
Sox3P53784 Card19-201ENSMUST00000048946 804 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Sox3P53784 Gm8098-201ENSMUST00000146985 1499 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
Sox3P53784 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Sox3P53784 Ccnyl1-203ENSMUST00000187170 1506 ntAPPRIS P1 TSL 5 BASIC22.33■■□□□ 1.17
Sox3P53784 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC22.33■■□□□ 1.16
Sox3P53784 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
Sox3P53784 Gjd3-201ENSMUST00000062931 837 ntAPPRIS P1 BASIC22.32■■□□□ 1.16
Sox3P53784 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Sox3P53784 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Sox3P53784 Izumo4-205ENSMUST00000218184 1196 ntAPPRIS P1 TSL 2 BASIC22.31■■□□□ 1.16
Sox3P53784 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Sox3P53784 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
Sox3P53784 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC22.29■■□□□ 1.16
Sox3P53784 Gm28513-201ENSMUST00000191474 613 ntTSL 3 BASIC22.29■■□□□ 1.16
Sox3P53784 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
Sox3P53784 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Sox3P53784 Arpc5l-202ENSMUST00000112862 1339 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Sox3P53784 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
Sox3P53784 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC22.28■■□□□ 1.16
Sox3P53784 Rab26-202ENSMUST00000061764 1291 ntTSL 2 BASIC22.28■■□□□ 1.16
Sox3P53784 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
Sox3P53784 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
Sox3P53784 Tsen34-201ENSMUST00000038521 1365 ntAPPRIS P1 TSL 5 BASIC22.27■■□□□ 1.16
Sox3P53784 Dazap1-201ENSMUST00000092305 1994 ntAPPRIS ALT1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Sox3P53784 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Sox3P53784 Sike1-202ENSMUST00000119450 774 ntTSL 3 BASIC22.27■■□□□ 1.16
Sox3P53784 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Sox3P53784 Rnaseh2c-201ENSMUST00000025864 1126 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Sox3P53784 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
Sox3P53784 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
Sox3P53784 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Sox3P53784 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Sox3P53784 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Sox3P53784 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Sox3P53784 Fbl-201ENSMUST00000042405 1197 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Sox3P53784 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Sox3P53784 Rps2-ps13-201ENSMUST00000117295 882 ntBASIC22.24■■□□□ 1.15
Sox3P53784 Gm12366-201ENSMUST00000121722 873 ntBASIC22.24■■□□□ 1.15
Sox3P53784 Rps2-206ENSMUST00000146867 962 ntTSL 5 BASIC22.24■■□□□ 1.15
Sox3P53784 Ptpn18-206ENSMUST00000188972 414 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
Sox3P53784 Rps2-ps10-201ENSMUST00000076842 879 ntBASIC22.24■■□□□ 1.15
Sox3P53784 Gm5786-201ENSMUST00000085368 882 ntBASIC22.24■■□□□ 1.15
Sox3P53784 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC22.23■■□□□ 1.15
Sox3P53784 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Sox3P53784 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC22.22■■□□□ 1.15
Sox3P53784 Eci1-201ENSMUST00000024946 1091 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Sox3P53784 Smagp-201ENSMUST00000066068 1132 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Sox3P53784 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC22.22■■□□□ 1.15
Sox3P53784 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Sox3P53784 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Sox3P53784 Gm15156-201ENSMUST00000148217 417 ntTSL 3 BASIC22.2■■□□□ 1.14
Sox3P53784 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Sox3P53784 Gm30346-201ENSMUST00000218641 1699 ntBASIC22.2■■□□□ 1.14
Sox3P53784 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Sox3P53784 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
Sox3P53784 1700020L24Rik-201ENSMUST00000037378 949 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Sox3P53784 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC22.18■■□□□ 1.14
Sox3P53784 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Sox3P53784 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Sox3P53784 Gli3-204ENSMUST00000141194 466 ntTSL 2 BASIC22.17■■□□□ 1.14
Sox3P53784 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Sox3P53784 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC22.16■■□□□ 1.14
Sox3P53784 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Sox3P53784 Ltb4r1-201ENSMUST00000057569 1394 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Sox3P53784 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
Sox3P53784 Nelfe-202ENSMUST00000165953 1381 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
Sox3P53784 Slc39a13-203ENSMUST00000111436 1291 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
Sox3P53784 AC153366.1-201ENSMUST00000218132 1056 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
Sox3P53784 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
Sox3P53784 Cdc14b-207ENSMUST00000221634 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC22.12■■□□□ 1.13
Sox3P53784 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Sox3P53784 Thap8-202ENSMUST00000108187 1184 ntAPPRIS P5 TSL 2 BASIC22.12■■□□□ 1.13
Sox3P53784 Klhl15-202ENSMUST00000113908 1235 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
Sox3P53784 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC22.11■■□□□ 1.13
Sox3P53784 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC22.11■■□□□ 1.13
Sox3P53784 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
Sox3P53784 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC22.11■■□□□ 1.13
Sox3P53784 Pdia5-201ENSMUST00000023550 1808 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Sox3P53784 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Retrieved 100 of 76,532 protein–RNA pairs in 49.1 ms