Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Klhl35-201ENSMUST00000037359 1954 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Lmx1bO88609 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Lmx1bO88609 AC131739.1-201ENSMUST00000221692 1245 ntBASIC21.35■■□□□ 1.01
Lmx1bO88609 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Lmx1bO88609 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Lmx1bO88609 Map2k7-207ENSMUST00000110999 1578 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Lmx1bO88609 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC21.33■■□□□ 1.01
Lmx1bO88609 Ptpn18-206ENSMUST00000188972 414 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Lmx1bO88609 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Lmx1bO88609 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC21.33■■□□□ 1
Lmx1bO88609 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC21.32■■□□□ 1
Lmx1bO88609 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC21.32■■□□□ 1
Lmx1bO88609 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Lmx1bO88609 E030037K01Rik-201ENSMUST00000180928 1756 ntBASIC21.32■■□□□ 1
Lmx1bO88609 Rcor3-207ENSMUST00000192866 1844 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
Lmx1bO88609 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC21.31■■□□□ 1
Lmx1bO88609 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC21.3■■□□□ 1
Lmx1bO88609 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Lmx1bO88609 Mpp6-202ENSMUST00000036236 2161 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Lmx1bO88609 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
Lmx1bO88609 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Lmx1bO88609 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Lmx1bO88609 Gm15156-201ENSMUST00000148217 417 ntTSL 3 BASIC21.29■■□□□ 1
Lmx1bO88609 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Lmx1bO88609 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Lmx1bO88609 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
Lmx1bO88609 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC21.28■■□□□ 1
Lmx1bO88609 Particl-201ENSMUST00000205370 1560 ntBASIC21.28■■□□□ 1
Lmx1bO88609 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
Lmx1bO88609 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC21.28■■□□□ 1
Lmx1bO88609 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC21.27■■□□□ 1
Lmx1bO88609 Ube2j2-205ENSMUST00000105583 1434 ntTSL 1 (best) BASIC21.27■■□□□ 1
Lmx1bO88609 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC21.27■□□□□ 0.99
Lmx1bO88609 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Lmx1bO88609 Gm28513-201ENSMUST00000191474 613 ntTSL 3 BASIC21.26■□□□□ 0.99
Lmx1bO88609 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Lmx1bO88609 Det1-201ENSMUST00000032839 2269 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Lmx1bO88609 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Lmx1bO88609 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Lmx1bO88609 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Lmx1bO88609 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
Lmx1bO88609 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC21.25■□□□□ 0.99
Lmx1bO88609 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Lmx1bO88609 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Lmx1bO88609 Cdc14b-207ENSMUST00000221634 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Lmx1bO88609 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
Lmx1bO88609 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC21.23■□□□□ 0.99
Lmx1bO88609 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Lmx1bO88609 Tsen34-201ENSMUST00000038521 1365 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
Lmx1bO88609 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Lmx1bO88609 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Lmx1bO88609 Chpt1-204ENSMUST00000117579 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Lmx1bO88609 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Lmx1bO88609 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Lmx1bO88609 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Lmx1bO88609 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Lmx1bO88609 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Lmx1bO88609 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Lmx1bO88609 Gemin7-202ENSMUST00000117222 1023 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
Lmx1bO88609 Nek6-202ENSMUST00000112895 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Lmx1bO88609 Ccnyl1-203ENSMUST00000187170 1506 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
Lmx1bO88609 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Lmx1bO88609 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Lmx1bO88609 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Lmx1bO88609 Gm11175-201ENSMUST00000116172 543 ntBASIC21.17■□□□□ 0.98
Lmx1bO88609 AC167019.3-201ENSMUST00000228225 1266 ntBASIC21.17■□□□□ 0.98
Lmx1bO88609 Tceal3-202ENSMUST00000113100 1148 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Lmx1bO88609 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Lmx1bO88609 Gm6311-201ENSMUST00000073790 878 ntBASIC21.16■□□□□ 0.98
Lmx1bO88609 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Lmx1bO88609 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
Lmx1bO88609 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Lmx1bO88609 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Lmx1bO88609 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Lmx1bO88609 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
Lmx1bO88609 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC21.14■□□□□ 0.97
Lmx1bO88609 Wdr34-201ENSMUST00000113711 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Lmx1bO88609 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC21.13■□□□□ 0.97
Lmx1bO88609 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
Lmx1bO88609 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Lmx1bO88609 AC153890.1-201ENSMUST00000220021 2469 ntBASIC21.12■□□□□ 0.97
Lmx1bO88609 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Lmx1bO88609 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Lmx1bO88609 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC21.11■□□□□ 0.97
Lmx1bO88609 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
Lmx1bO88609 Znrf1-207ENSMUST00000173506 1238 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
Lmx1bO88609 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Lmx1bO88609 Zbtb12-201ENSMUST00000052778 1858 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Lmx1bO88609 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Lmx1bO88609 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Lmx1bO88609 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC21.07■□□□□ 0.96
Lmx1bO88609 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
Lmx1bO88609 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Lmx1bO88609 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC21.06■□□□□ 0.96
Lmx1bO88609 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC21.06■□□□□ 0.96
Lmx1bO88609 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC21.06■□□□□ 0.96
Lmx1bO88609 E2f5-201ENSMUST00000029069 1779 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Lmx1bO88609 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
Lmx1bO88609 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Lmx1bO88609 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Retrieved 100 of 76,532 protein–RNA pairs in 40.6 ms