Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
Chd3B1AR17 Klhl35-201ENSMUST00000037359 1954 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
Chd3B1AR17 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC23.49■■□□□ 1.35
Chd3B1AR17 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC23.48■■□□□ 1.35
Chd3B1AR17 Acvr2b-202ENSMUST00000165044 2093 ntTSL 2 BASIC23.48■■□□□ 1.35
Chd3B1AR17 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
Chd3B1AR17 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
Chd3B1AR17 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
Chd3B1AR17 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.35
Chd3B1AR17 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
Chd3B1AR17 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC23.45■■□□□ 1.34
Chd3B1AR17 Wdr34-201ENSMUST00000113711 1814 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
Chd3B1AR17 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
Chd3B1AR17 Gm15156-201ENSMUST00000148217 417 ntTSL 3 BASIC23.43■■□□□ 1.34
Chd3B1AR17 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC23.43■■□□□ 1.34
Chd3B1AR17 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
Chd3B1AR17 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC23.42■■□□□ 1.34
Chd3B1AR17 Ube2j2-205ENSMUST00000105583 1434 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
Chd3B1AR17 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC23.41■■□□□ 1.34
Chd3B1AR17 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC23.41■■□□□ 1.34
Chd3B1AR17 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC23.4■■□□□ 1.34
Chd3B1AR17 Tceal3-202ENSMUST00000113100 1148 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
Chd3B1AR17 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
Chd3B1AR17 Cdc14b-207ENSMUST00000221634 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC23.39■■□□□ 1.34
Chd3B1AR17 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC23.38■■□□□ 1.33
Chd3B1AR17 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC23.38■■□□□ 1.33
Chd3B1AR17 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC23.38■■□□□ 1.33
Chd3B1AR17 Ptpn18-206ENSMUST00000188972 414 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
Chd3B1AR17 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
Chd3B1AR17 Zbtb12-201ENSMUST00000052778 1858 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Chd3B1AR17 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Chd3B1AR17 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
Chd3B1AR17 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC23.36■■□□□ 1.33
Chd3B1AR17 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
Chd3B1AR17 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
Chd3B1AR17 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Chd3B1AR17 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Chd3B1AR17 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
Chd3B1AR17 Ltb4r1-201ENSMUST00000057569 1394 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Chd3B1AR17 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC23.34■■□□□ 1.33
Chd3B1AR17 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC23.33■■□□□ 1.33
Chd3B1AR17 Tsen34-201ENSMUST00000038521 1365 ntAPPRIS P1 TSL 5 BASIC23.33■■□□□ 1.33
Chd3B1AR17 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
Chd3B1AR17 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC23.32■■□□□ 1.32
Chd3B1AR17 Hibadh-201ENSMUST00000031788 1825 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Chd3B1AR17 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC23.31■■□□□ 1.32
Chd3B1AR17 Gm11175-201ENSMUST00000116172 543 ntBASIC23.31■■□□□ 1.32
Chd3B1AR17 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC23.31■■□□□ 1.32
Chd3B1AR17 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Chd3B1AR17 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
Chd3B1AR17 Gm6311-201ENSMUST00000073790 878 ntBASIC23.31■■□□□ 1.32
Chd3B1AR17 E2f5-201ENSMUST00000029069 1779 ntAPPRIS P2 TSL 1 (best) BASIC23.29■■□□□ 1.32
Chd3B1AR17 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC23.29■■□□□ 1.32
Chd3B1AR17 Kdf1-202ENSMUST00000105901 1699 ntAPPRIS P2 TSL 1 (best) BASIC23.29■■□□□ 1.32
Chd3B1AR17 Rab26-202ENSMUST00000061764 1291 ntTSL 2 BASIC23.28■■□□□ 1.32
Chd3B1AR17 Paqr6-203ENSMUST00000147948 837 ntTSL 2 BASIC23.27■■□□□ 1.32
Chd3B1AR17 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Chd3B1AR17 Nelfe-202ENSMUST00000165953 1381 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Chd3B1AR17 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC23.27■■□□□ 1.32
Chd3B1AR17 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC23.26■■□□□ 1.31
Chd3B1AR17 Gm37136-201ENSMUST00000194368 194 ntBASIC23.26■■□□□ 1.31
Chd3B1AR17 Fbl-201ENSMUST00000042405 1197 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Chd3B1AR17 Krtap17-1-201ENSMUST00000105049 761 ntAPPRIS P1 BASIC23.24■■□□□ 1.31
Chd3B1AR17 Gm45364-201ENSMUST00000210883 159 ntBASIC23.24■■□□□ 1.31
Chd3B1AR17 A930035D04Rik-201ENSMUST00000064013 543 ntBASIC23.24■■□□□ 1.31
Chd3B1AR17 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Chd3B1AR17 Gm26917-201ENSMUST00000182520 869 ntTSL 5 BASIC23.23■■□□□ 1.31
Chd3B1AR17 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Chd3B1AR17 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Chd3B1AR17 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Chd3B1AR17 Izumo4-205ENSMUST00000218184 1196 ntAPPRIS P1 TSL 2 BASIC23.2■■□□□ 1.3
Chd3B1AR17 AC125444.1-201ENSMUST00000223536 639 ntAPPRIS P1 BASIC23.2■■□□□ 1.3
Chd3B1AR17 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Chd3B1AR17 Ccnyl1-203ENSMUST00000187170 1506 ntAPPRIS P1 TSL 5 BASIC23.18■■□□□ 1.3
Chd3B1AR17 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Chd3B1AR17 Eva1b-202ENSMUST00000106150 1144 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Chd3B1AR17 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Chd3B1AR17 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC23.15■■□□□ 1.3
Chd3B1AR17 Card19-201ENSMUST00000048946 804 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Chd3B1AR17 Mir6538-201ENSMUST00000183713 110 ntBASIC23.13■■□□□ 1.29
Chd3B1AR17 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Chd3B1AR17 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
Chd3B1AR17 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Chd3B1AR17 Pkd1-207ENSMUST00000228550 1050 ntBASIC23.12■■□□□ 1.29
Chd3B1AR17 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
Chd3B1AR17 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
Chd3B1AR17 Gm14121-201ENSMUST00000121441 1380 ntBASIC23.12■■□□□ 1.29
Chd3B1AR17 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Chd3B1AR17 Dcun1d5-201ENSMUST00000034499 1122 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
Chd3B1AR17 Gjd3-201ENSMUST00000062931 837 ntAPPRIS P1 BASIC23.11■■□□□ 1.29
Chd3B1AR17 Pde6d-201ENSMUST00000027444 1159 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
Chd3B1AR17 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC23.1■■□□□ 1.29
Chd3B1AR17 Azin2-202ENSMUST00000106068 2049 ntAPPRIS P1 TSL 5 BASIC23.1■■□□□ 1.29
Chd3B1AR17 Fezf2-202ENSMUST00000224023 1917 ntBASIC23.1■■□□□ 1.29
Chd3B1AR17 Hs3st6-201ENSMUST00000044922 1219 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
Chd3B1AR17 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
Chd3B1AR17 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
Chd3B1AR17 Arpc5l-202ENSMUST00000112862 1339 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Chd3B1AR17 D16Ertd472e-201ENSMUST00000114218 1271 ntAPPRIS P1 TSL 5 BASIC23.09■■□□□ 1.29
Chd3B1AR17 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC23.09■■□□□ 1.29
Retrieved 100 of 76,532 protein–RNA pairs in 43.8 ms