Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AL606490.1-201ENST00000452266 765 ntBASIC6.18□□□□□ -1.42
SMARCA1P28370 RN7SL214P-201ENST00000487317 265 ntBASIC6.18□□□□□ -1.42
SMARCA1P28370 AC096576.3-201ENST00000505528 721 ntTSL 5 BASIC6.18□□□□□ -1.42
SMARCA1P28370 AC008700.1-201ENST00000512571 654 ntTSL 3 BASIC6.18□□□□□ -1.42
SMARCA1P28370 MTCYBP19-201ENST00000517463 1124 ntBASIC6.18□□□□□ -1.42
SMARCA1P28370 AP001207.2-201ENST00000519490 539 ntBASIC6.18□□□□□ -1.42
SMARCA1P28370 AC090150.2-201ENST00000521869 815 ntTSL 3 BASIC6.18□□□□□ -1.42
SMARCA1P28370 AC022874.1-201ENST00000526382 550 ntTSL 3 BASIC6.18□□□□□ -1.42
SMARCA1P28370 AC108471.2-203ENST00000532680 517 ntTSL 5 BASIC6.18□□□□□ -1.42
SMARCA1P28370 OR4A43P-201ENST00000532938 908 ntBASIC6.18□□□□□ -1.42
SMARCA1P28370 AC009509.1-201ENST00000536317 1110 ntTSL 5 BASIC6.18□□□□□ -1.42
SMARCA1P28370 LRRC34P1-201ENST00000542742 915 ntBASIC6.18□□□□□ -1.42
SMARCA1P28370 AC008147.1-201ENST00000551284 325 ntTSL 3 BASIC6.18□□□□□ -1.42
SMARCA1P28370 C15orf41-203ENST00000562489 715 ntTSL 2 BASIC6.18□□□□□ -1.42
SMARCA1P28370 AC006504.7-201ENST00000592806 924 ntTSL 3 BASIC6.18□□□□□ -1.42
SMARCA1P28370 AC068020.1-201ENST00000594215 661 ntBASIC6.18□□□□□ -1.42
SMARCA1P28370 AC130352.1-201ENST00000602979 661 ntBASIC6.18□□□□□ -1.42
SMARCA1P28370 LINC00397-202ENST00000606785 409 ntTSL 5 BASIC6.18□□□□□ -1.42
SMARCA1P28370 AC010632.3-201ENST00000611377 369 ntBASIC6.18□□□□□ -1.42
SMARCA1P28370 VN1R9P-201ENST00000614184 867 ntBASIC6.18□□□□□ -1.42
SMARCA1P28370 AL162574.1-201ENST00000615702 950 ntBASIC6.18□□□□□ -1.42
SMARCA1P28370 AC008115.4-201ENST00000619780 775 ntBASIC6.18□□□□□ -1.42
SMARCA1P28370 AL669942.2-201ENST00000620352 697 ntBASIC6.18□□□□□ -1.42
SMARCA1P28370 AP2B1-222ENST00000628168 192 ntTSL 5 BASIC6.18□□□□□ -1.42
SMARCA1P28370 ATL2-217ENST00000629272 1242 ntTSL 5 BASIC6.18□□□□□ -1.42
SMARCA1P28370 AC099654.6-201ENST00000636487 512 ntBASIC6.18□□□□□ -1.42
SMARCA1P28370 CCDC195-201ENST00000638102 606 ntAPPRIS P1 TSL 5 BASIC6.18□□□□□ -1.42
SMARCA1P28370 RUVBL2-214ENST00000640699 153 ntTSL 5 BASIC6.18□□□□□ -1.42
SMARCA1P28370 PCGF5-205ENST00000614189 7037 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
SMARCA1P28370 VPS50-202ENST00000305866 3613 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
SMARCA1P28370 ZBTB38-202ENST00000441582 3662 ntAPPRIS P1 TSL 2 BASIC6.18□□□□□ -1.42
SMARCA1P28370 SYNCRIP-204ENST00000616122 6764 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
SMARCA1P28370 SLCO1C1-208ENST00000545102 2868 ntTSL 2 BASIC6.18□□□□□ -1.42
SMARCA1P28370 DOPEY1-201ENST00000237163 7995 ntAPPRIS ALT1 TSL 5 BASIC6.18□□□□□ -1.42
SMARCA1P28370 BAALC-AS1-201ENST00000499522 1353 ntTSL 5 BASIC6.18□□□□□ -1.42
SMARCA1P28370 MCMDC2-204ENST00000422365 5096 ntAPPRIS P1 TSL 2 BASIC6.18□□□□□ -1.42
SMARCA1P28370 RAPGEF2-201ENST00000264431 6949 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
SMARCA1P28370 AC008691.1-207ENST00000636819 4154 ntTSL 5 BASIC6.17□□□□□ -1.42
SMARCA1P28370 OFD1P6Y-201ENST00000432335 1637 ntTSL 2 BASIC6.17□□□□□ -1.42
SMARCA1P28370 TTTY9B-201ENST00000433794 1637 ntTSL 2 BASIC6.17□□□□□ -1.42
SMARCA1P28370 LMOD2-202ENST00000458573 2346 ntAPPRIS P1 TSL 2 BASIC6.17□□□□□ -1.42
SMARCA1P28370 RYR3-212ENST00000634891 15591 ntAPPRIS P3 TSL 1 (best) BASIC6.17□□□□□ -1.42
SMARCA1P28370 CKAP2-207ENST00000490903 3395 ntAPPRIS ALT2 TSL 2 BASIC6.17□□□□□ -1.42
SMARCA1P28370 PHACTR2-207ENST00000427704 9531 ntAPPRIS ALT2 TSL 1 (best) BASIC6.17□□□□□ -1.42
SMARCA1P28370 AC005162.3-201ENST00000609389 3695 ntTSL 5 BASIC6.17□□□□□ -1.42
SMARCA1P28370 GABRA1-215ENST00000636573 2262 ntAPPRIS P1 TSL 5 BASIC6.17□□□□□ -1.42
SMARCA1P28370 LEPR-208ENST00000616738 5081 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
SMARCA1P28370 RN7SKP145-201ENST00000363291 303 ntBASIC6.17□□□□□ -1.42
SMARCA1P28370 MT-TP-201ENST00000387461 68 ntBASIC6.17□□□□□ -1.42
SMARCA1P28370 RNU1-149P-201ENST00000390870 161 ntBASIC6.17□□□□□ -1.42
SMARCA1P28370 XKRYP4-201ENST00000414395 483 ntBASIC6.17□□□□□ -1.42
SMARCA1P28370 PCNPP4-201ENST00000414817 517 ntBASIC6.17□□□□□ -1.42
SMARCA1P28370 VPS26BP1-201ENST00000417155 755 ntBASIC6.17□□□□□ -1.42
SMARCA1P28370 AC002064.2-201ENST00000420245 289 ntTSL 3 BASIC6.17□□□□□ -1.42
SMARCA1P28370 TXNIP-201ENST00000425134 1225 ntTSL 2 BASIC6.17□□□□□ -1.42
SMARCA1P28370 AL163193.1-201ENST00000444895 788 ntBASIC6.17□□□□□ -1.42
SMARCA1P28370 XKRYP5-201ENST00000449659 483 ntBASIC6.17□□□□□ -1.42
SMARCA1P28370 CALM1P2-201ENST00000452941 448 ntBASIC6.17□□□□□ -1.42
SMARCA1P28370 AC107015.1-201ENST00000466902 747 ntBASIC6.17□□□□□ -1.42
SMARCA1P28370 RN7SL30P-201ENST00000488416 306 ntBASIC6.17□□□□□ -1.42
SMARCA1P28370 AC018816.1-205ENST00000489771 509 ntTSL 2 BASIC6.17□□□□□ -1.42
SMARCA1P28370 AC005412.2-201ENST00000492004 341 ntBASIC6.17□□□□□ -1.42
SMARCA1P28370 AC021146.5-201ENST00000503544 545 ntBASIC6.17□□□□□ -1.42
SMARCA1P28370 RPS4XP20-201ENST00000505751 772 ntBASIC6.17□□□□□ -1.42
SMARCA1P28370 LINC02201-201ENST00000508992 468 ntTSL 2 BASIC6.17□□□□□ -1.42
SMARCA1P28370 RNU6-276P-201ENST00000516114 96 ntBASIC6.17□□□□□ -1.42
SMARCA1P28370 AZIN1-AS1-203ENST00000517996 756 ntTSL 3 BASIC6.17□□□□□ -1.42
SMARCA1P28370 CDC42P3-201ENST00000518493 633 ntBASIC6.17□□□□□ -1.42
SMARCA1P28370 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC6.17□□□□□ -1.42
SMARCA1P28370 AC124067.3-201ENST00000522643 847 ntTSL 3 BASIC6.17□□□□□ -1.42
SMARCA1P28370 AL442163.1-201ENST00000557251 515 ntTSL 5 BASIC6.17□□□□□ -1.42
SMARCA1P28370 AC217774.1-201ENST00000578936 517 ntTSL 4 BASIC6.17□□□□□ -1.42
SMARCA1P28370 AC022098.3-201ENST00000590715 315 ntTSL 3 BASIC6.17□□□□□ -1.42
SMARCA1P28370 AC108738.1-201ENST00000603703 237 ntBASIC6.17□□□□□ -1.42
SMARCA1P28370 AL162431.4-201ENST00000604674 411 ntBASIC6.17□□□□□ -1.42
SMARCA1P28370 AC099785.1-201ENST00000605697 437 ntBASIC6.17□□□□□ -1.42
SMARCA1P28370 AL135786.2-201ENST00000608422 615 ntBASIC6.17□□□□□ -1.42
SMARCA1P28370 AL157392.4-201ENST00000609756 345 ntBASIC6.17□□□□□ -1.42
SMARCA1P28370 AC009159.2-201ENST00000617603 606 ntBASIC6.17□□□□□ -1.42
SMARCA1P28370 AP000484.1-201ENST00000620067 1252 ntBASIC6.17□□□□□ -1.42
SMARCA1P28370 ST6GALNAC3-203ENST00000621530 617 ntTSL 5 BASIC6.17□□□□□ -1.42
SMARCA1P28370 RPL23AP61-201ENST00000623642 466 ntBASIC6.17□□□□□ -1.42
SMARCA1P28370 AC006963.1-201ENST00000624003 1052 ntBASIC6.17□□□□□ -1.42
SMARCA1P28370 LAMTOR5-AS1-244ENST00000629484 780 ntTSL 5 BASIC6.17□□□□□ -1.42
SMARCA1P28370 SOX2-OT-218ENST00000498731 3576 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
SMARCA1P28370 NDUFA5-207ENST00000471770 5608 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
SMARCA1P28370 COL14A1-209ENST00000537875 3119 ntTSL 5 BASIC6.17□□□□□ -1.42
SMARCA1P28370 MMRN1-202ENST00000394980 5217 ntAPPRIS P1 TSL 5 BASIC6.17□□□□□ -1.42
SMARCA1P28370 ZNF677-201ENST00000333952 3422 ntAPPRIS P1 TSL 2 BASIC6.17□□□□□ -1.42
SMARCA1P28370 RABGAP1L-208ENST00000392064 6282 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
SMARCA1P28370 CCPG1-202ENST00000425574 1945 ntTSL 2 BASIC6.17□□□□□ -1.42
SMARCA1P28370 DYNC1I2-225ENST00000508530 2494 ntAPPRIS ALT1 TSL 1 (best) BASIC6.17□□□□□ -1.42
SMARCA1P28370 ALCAM-205ENST00000472644 4189 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
SMARCA1P28370 PRDM2-206ENST00000413440 6175 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
SMARCA1P28370 ETV1-208ENST00000420159 6231 ntTSL 2 BASIC6.17□□□□□ -1.42
SMARCA1P28370 CHMP1B2P-202ENST00000614414 6813 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
SMARCA1P28370 AC004158.1-201ENST00000564508 4319 ntBASIC6.16□□□□□ -1.42
SMARCA1P28370 C8orf22-201ENST00000303202 1499 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
SMARCA1P28370 DECR1-215ENST00000522161 1766 ntAPPRIS ALT2 TSL 2 BASIC6.16□□□□□ -1.42
SMARCA1P28370 RNF145-201ENST00000274542 3364 ntTSL 2 BASIC6.16□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 86.5 ms