Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AL354868.1-201ENST00000417077 482 ntBASIC5.7□□□□□ -1.5
BDNFP23560 AL590727.1-201ENST00000418652 771 ntTSL 2 BASIC5.7□□□□□ -1.5
BDNFP23560 AL139148.1-201ENST00000427122 680 ntBASIC5.7□□□□□ -1.5
BDNFP23560 AL691517.1-201ENST00000440833 1235 ntBASIC5.7□□□□□ -1.5
BDNFP23560 CNOT7P2-201ENST00000441051 832 ntBASIC5.7□□□□□ -1.5
BDNFP23560 HMGB3P21-201ENST00000452483 547 ntBASIC5.7□□□□□ -1.5
BDNFP23560 RPS6P2-201ENST00000454208 705 ntBASIC5.7□□□□□ -1.5
BDNFP23560 AL035090.1-201ENST00000454835 332 ntBASIC5.7□□□□□ -1.5
BDNFP23560 LINC01436-201ENST00000457157 1048 ntTSL 2 BASIC5.7□□□□□ -1.5
BDNFP23560 AC079841.1-201ENST00000481228 950 ntBASIC5.7□□□□□ -1.5
BDNFP23560 AC027627.1-201ENST00000506895 753 ntTSL 3 BASIC5.7□□□□□ -1.5
BDNFP23560 AC027308.1-201ENST00000517993 110 ntBASIC5.7□□□□□ -1.5
BDNFP23560 THUMPD3-AS1-210ENST00000519043 1115 ntTSL 3 BASIC5.7□□□□□ -1.5
BDNFP23560 HAUS1P3-201ENST00000523909 662 ntBASIC5.7□□□□□ -1.5
BDNFP23560 ASB8-202ENST00000535055 657 ntTSL 2 BASIC5.7□□□□□ -1.5
BDNFP23560 CA1-224ENST00000542576 1236 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
BDNFP23560 AC025260.1-201ENST00000548858 430 ntBASIC5.7□□□□□ -1.5
BDNFP23560 AL136501.1-201ENST00000555913 790 ntTSL 2 BASIC5.7□□□□□ -1.5
BDNFP23560 AL357172.1-201ENST00000556016 593 ntTSL 3 BASIC5.7□□□□□ -1.5
BDNFP23560 AC007495.2-201ENST00000562822 459 ntTSL 3 BASIC5.7□□□□□ -1.5
BDNFP23560 AC106785.3-201ENST00000564064 847 ntBASIC5.7□□□□□ -1.5
BDNFP23560 AC007448.1-201ENST00000582714 234 ntBASIC5.7□□□□□ -1.5
BDNFP23560 AC091132.5-202ENST00000587078 501 ntTSL 3 BASIC5.7□□□□□ -1.5
BDNFP23560 AC138035.1-202ENST00000604669 683 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
BDNFP23560 AC026786.2-201ENST00000606110 392 ntTSL 3 BASIC5.7□□□□□ -1.5
BDNFP23560 AP002505.2-201ENST00000623585 696 ntBASIC5.7□□□□□ -1.5
BDNFP23560 AC138965.3-201ENST00000623875 498 ntBASIC5.7□□□□□ -1.5
BDNFP23560 AC135068.5-201ENST00000624197 983 ntBASIC5.7□□□□□ -1.5
BDNFP23560 CYP4F35P-202ENST00000636121 390 ntBASIC5.7□□□□□ -1.5
BDNFP23560 AC074101.1-201ENST00000637861 241 ntBASIC5.7□□□□□ -1.5
BDNFP23560 AC079776.5-201ENST00000641920 211 ntBASIC5.7□□□□□ -1.5
BDNFP23560 FOXN2-203ENST00000616844 1414 ntTSL 5 BASIC5.7□□□□□ -1.5
BDNFP23560 CALN1-204ENST00000405452 8571 ntTSL 2 BASIC5.7□□□□□ -1.5
BDNFP23560 AC022031.1-201ENST00000585985 2593 ntBASIC5.7□□□□□ -1.5
BDNFP23560 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
BDNFP23560 MYB-213ENST00000525369 2866 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
BDNFP23560 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC5.7□□□□□ -1.5
BDNFP23560 AC007529.1-201ENST00000418574 2178 ntBASIC5.7□□□□□ -1.5
BDNFP23560 LINC01206-204ENST00000482787 9580 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
BDNFP23560 PCAT14-202ENST00000627127 3935 ntBASIC5.7□□□□□ -1.5
BDNFP23560 DYNC1I2-225ENST00000508530 2494 ntAPPRIS ALT1 TSL 1 (best) BASIC5.7□□□□□ -1.5
BDNFP23560 CPXCR1-201ENST00000276127 1630 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
BDNFP23560 AC011493.1-201ENST00000596753 1632 ntBASIC5.7□□□□□ -1.5
BDNFP23560 LIX1-AS1-201ENST00000504578 1793 ntTSL 5 BASIC5.7□□□□□ -1.5
BDNFP23560 AC064875.1-201ENST00000425974 1942 ntTSL 2 BASIC5.7□□□□□ -1.5
BDNFP23560 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC5.7□□□□□ -1.5
BDNFP23560 GAPT-202ENST00000396776 3016 ntAPPRIS P1 TSL 2 BASIC5.69□□□□□ -1.5
BDNFP23560 AL161911.1-202ENST00000464488 1534 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
BDNFP23560 IRAK1BP1-204ENST00000607739 1387 ntTSL 2 BASIC5.69□□□□□ -1.5
BDNFP23560 MDN1-201ENST00000369393 18413 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
BDNFP23560 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
BDNFP23560 SGMS2-201ENST00000359079 1887 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
BDNFP23560 AL031119.1-201ENST00000404707 1879 ntBASIC5.69□□□□□ -1.5
BDNFP23560 ARHGAP5-206ENST00000539826 4881 ntAPPRIS P3 TSL 1 (best) BASIC5.69□□□□□ -1.5
BDNFP23560 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
BDNFP23560 OR7G2-201ENST00000305456 1038 ntAPPRIS P2 BASIC5.69□□□□□ -1.5
BDNFP23560 OR11H6-201ENST00000315519 993 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
BDNFP23560 U3.2-201ENST00000362981 210 ntBASIC5.69□□□□□ -1.5
BDNFP23560 U3.28-201ENST00000391249 210 ntBASIC5.69□□□□□ -1.5
BDNFP23560 DPPA2P3-201ENST00000411853 655 ntBASIC5.69□□□□□ -1.5
BDNFP23560 XKRYP4-201ENST00000414395 483 ntBASIC5.69□□□□□ -1.5
BDNFP23560 AC108075.1-201ENST00000424692 529 ntBASIC5.69□□□□□ -1.5
BDNFP23560 LINC00266-4P-201ENST00000427373 842 ntTSL 3 BASIC5.69□□□□□ -1.5
BDNFP23560 AC007556.1-201ENST00000432133 307 ntTSL 2 BASIC5.69□□□□□ -1.5
BDNFP23560 FTH1P16-201ENST00000435241 552 ntBASIC5.69□□□□□ -1.5
BDNFP23560 AC073465.2-201ENST00000440938 498 ntBASIC5.69□□□□□ -1.5
BDNFP23560 GAPDHP25-201ENST00000447061 1001 ntBASIC5.69□□□□□ -1.5
BDNFP23560 XKRYP5-201ENST00000449659 483 ntBASIC5.69□□□□□ -1.5
BDNFP23560 AURKAPS1-201ENST00000451805 1212 ntBASIC5.69□□□□□ -1.5
BDNFP23560 PSAT1P4-201ENST00000466500 526 ntBASIC5.69□□□□□ -1.5
BDNFP23560 RN7SL727P-201ENST00000482164 296 ntBASIC5.69□□□□□ -1.5
BDNFP23560 AC080013.1-206ENST00000496842 712 ntTSL 2 BASIC5.69□□□□□ -1.5
BDNFP23560 AC023050.1-201ENST00000498198 304 ntBASIC5.69□□□□□ -1.5
BDNFP23560 AC006499.3-201ENST00000506077 748 ntBASIC5.69□□□□□ -1.5
BDNFP23560 SETP12-201ENST00000514068 805 ntBASIC5.69□□□□□ -1.5
BDNFP23560 IGKV2-36-201ENST00000519999 223 ntBASIC5.69□□□□□ -1.5
BDNFP23560 AC008575.1-201ENST00000520401 694 ntAPPRIS P1 TSL 3 BASIC5.69□□□□□ -1.5
BDNFP23560 AC073862.1-201ENST00000537998 409 ntTSL 3 BASIC5.69□□□□□ -1.5
BDNFP23560 AC068775.2-201ENST00000539033 998 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
BDNFP23560 ASB8-215ENST00000540782 659 ntTSL 3 BASIC5.69□□□□□ -1.5
BDNFP23560 OR11H3P-201ENST00000554547 982 ntBASIC5.69□□□□□ -1.5
BDNFP23560 AC025918.2-201ENST00000558683 763 ntBASIC5.69□□□□□ -1.5
BDNFP23560 USP3-AS1-202ENST00000559357 455 ntTSL 2 BASIC5.69□□□□□ -1.5
BDNFP23560 CSNK1A1P1-202ENST00000563423 981 ntBASIC5.69□□□□□ -1.5
BDNFP23560 AL021368.1-201ENST00000607490 540 ntBASIC5.69□□□□□ -1.5
BDNFP23560 AL353770.4-201ENST00000614936 468 ntTSL 5 BASIC5.69□□□□□ -1.5
BDNFP23560 AL590491.2-203ENST00000614969 468 ntTSL 4 BASIC5.69□□□□□ -1.5
BDNFP23560 DARS-AS1-225ENST00000615163 824 ntTSL 5 BASIC5.69□□□□□ -1.5
BDNFP23560 Metazoa_SRP.170-201ENST00000616060 254 ntBASIC5.69□□□□□ -1.5
BDNFP23560 MIR1264-201ENST00000616374 69 ntBASIC5.69□□□□□ -1.5
BDNFP23560 CU634019.2-201ENST00000625184 593 ntTSL 3 BASIC5.69□□□□□ -1.5
BDNFP23560 CCT5-215ENST00000625723 135 ntTSL 5 BASIC5.69□□□□□ -1.5
BDNFP23560 AC097495.1-201ENST00000637675 546 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
BDNFP23560 ZNF891-201ENST00000537226 15455 ntAPPRIS P1 TSL 2 BASIC5.69□□□□□ -1.5
BDNFP23560 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC5.69□□□□□ -1.5
BDNFP23560 GJA9-201ENST00000357771 1799 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
BDNFP23560 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC5.69□□□□□ -1.5
BDNFP23560 Z73965.1-201ENST00000623412 2297 ntBASIC5.69□□□□□ -1.5
BDNFP23560 ASAH2-202ENST00000395526 6880 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
BDNFP23560 OR55B1P-203ENST00000641518 2602 ntBASIC5.69□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 74.5 ms