Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AP005436.3-201ENST00000532849 572 ntTSL 5 BASIC4.47□□□□□ -1.69
SKA3Q8IX90 AC005000.1-201ENST00000536192 288 ntBASIC4.47□□□□□ -1.69
SKA3Q8IX90 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC4.47□□□□□ -1.69
SKA3Q8IX90 HAUS8P1-201ENST00000549005 542 ntBASIC4.47□□□□□ -1.69
SKA3Q8IX90 AC008126.1-201ENST00000549019 480 ntBASIC4.47□□□□□ -1.69
SKA3Q8IX90 GS1-279B7.1-203ENST00000565520 609 ntTSL 5 BASIC4.47□□□□□ -1.69
SKA3Q8IX90 LINC02137-203ENST00000567448 930 ntTSL 5 BASIC4.47□□□□□ -1.69
SKA3Q8IX90 MIR3691-201ENST00000578066 90 ntBASIC4.47□□□□□ -1.69
SKA3Q8IX90 MOCS2-209ENST00000582677 741 ntTSL 5 BASIC4.47□□□□□ -1.69
SKA3Q8IX90 FAM60CP-201ENST00000591086 664 ntBASIC4.47□□□□□ -1.69
SKA3Q8IX90 AL133406.3-201ENST00000606817 541 ntBASIC4.47□□□□□ -1.69
SKA3Q8IX90 USP32P2-207ENST00000608376 253 ntTSL 5 BASIC4.47□□□□□ -1.69
SKA3Q8IX90 SNORD91B-202ENST00000608459 222 ntBASIC4.47□□□□□ -1.69
SKA3Q8IX90 AC006840.1-201ENST00000623069 542 ntBASIC4.47□□□□□ -1.69
SKA3Q8IX90 AL359094.1-202ENST00000629917 1113 ntTSL 5 BASIC4.47□□□□□ -1.69
SKA3Q8IX90 SLC8A1-AS1-239ENST00000631142 623 ntTSL 5 BASIC4.47□□□□□ -1.69
SKA3Q8IX90 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC4.47□□□□□ -1.69
SKA3Q8IX90 MYNN-203ENST00000544106 4815 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
SKA3Q8IX90 MYO3A-203ENST00000376302 2723 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
SKA3Q8IX90 HTR1F-201ENST00000319595 3140 ntAPPRIS P1 BASIC4.47□□□□□ -1.69
SKA3Q8IX90 DDX4-211ENST00000511853 1984 ntTSL 2 BASIC4.47□□□□□ -1.69
SKA3Q8IX90 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
SKA3Q8IX90 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC4.47□□□□□ -1.69
SKA3Q8IX90 AP000808.1-201ENST00000512200 3252 ntTSL 2 BASIC4.47□□□□□ -1.69
SKA3Q8IX90 RPL34-AS1-202ENST00000507248 3713 ntTSL 2 BASIC4.46□□□□□ -1.69
SKA3Q8IX90 CASP10-204ENST00000346817 3926 ntAPPRIS ALT2 TSL 5 BASIC4.46□□□□□ -1.69
SKA3Q8IX90 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
SKA3Q8IX90 SPINK5-202ENST00000359874 3656 ntAPPRIS ALT2 TSL 1 (best) BASIC4.46□□□□□ -1.7
SKA3Q8IX90 SON-204ENST00000381692 2463 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
SKA3Q8IX90 PPP1R2P3-201ENST00000522232 1991 ntAPPRIS P1 BASIC4.46□□□□□ -1.7
SKA3Q8IX90 MTND5P23-201ENST00000430812 1655 ntBASIC4.46□□□□□ -1.7
SKA3Q8IX90 RNU6-386P-201ENST00000362650 107 ntBASIC4.46□□□□□ -1.7
SKA3Q8IX90 MIR137-201ENST00000385223 102 ntBASIC4.46□□□□□ -1.7
SKA3Q8IX90 RPS24P12-201ENST00000402084 394 ntBASIC4.46□□□□□ -1.7
SKA3Q8IX90 C2orf73-203ENST00000405749 576 ntTSL 4 BASIC4.46□□□□□ -1.7
SKA3Q8IX90 AC009502.1-203ENST00000416861 496 ntTSL 2 BASIC4.46□□□□□ -1.7
SKA3Q8IX90 LINC02528-201ENST00000417800 381 ntTSL 2 BASIC4.46□□□□□ -1.7
SKA3Q8IX90 AL606970.4-201ENST00000424343 455 ntTSL 2 BASIC4.46□□□□□ -1.7
SKA3Q8IX90 LINC01798-203ENST00000428590 553 ntTSL 4 BASIC4.46□□□□□ -1.7
SKA3Q8IX90 BX323845.1-201ENST00000432417 179 ntBASIC4.46□□□□□ -1.7
SKA3Q8IX90 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC4.46□□□□□ -1.7
SKA3Q8IX90 AL121957.1-202ENST00000437040 329 ntTSL 3 BASIC4.46□□□□□ -1.7
SKA3Q8IX90 XKRYP6-201ENST00000440468 1116 ntBASIC4.46□□□□□ -1.7
SKA3Q8IX90 FMR1-IT1-201ENST00000441414 343 ntTSL 5 BASIC4.46□□□□□ -1.7
SKA3Q8IX90 XKRYP3-201ENST00000442113 1116 ntBASIC4.46□□□□□ -1.7
SKA3Q8IX90 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC4.46□□□□□ -1.7
SKA3Q8IX90 AC004994.1-201ENST00000447057 313 ntTSL 3 BASIC4.46□□□□□ -1.7
SKA3Q8IX90 AC239798.3-201ENST00000454459 408 ntBASIC4.46□□□□□ -1.7
SKA3Q8IX90 AC112206.1-201ENST00000468416 477 ntBASIC4.46□□□□□ -1.7
SKA3Q8IX90 APOPT1-204ENST00000473127 739 ntTSL 3 BASIC4.46□□□□□ -1.7
SKA3Q8IX90 RN7SL799P-201ENST00000475891 298 ntBASIC4.46□□□□□ -1.7
SKA3Q8IX90 BX284632.1-201ENST00000478218 541 ntBASIC4.46□□□□□ -1.7
SKA3Q8IX90 AC005412.2-201ENST00000492004 341 ntBASIC4.46□□□□□ -1.7
SKA3Q8IX90 RPS4XP14-201ENST00000493072 781 ntBASIC4.46□□□□□ -1.7
SKA3Q8IX90 AC006499.3-201ENST00000506077 748 ntBASIC4.46□□□□□ -1.7
SKA3Q8IX90 AC010395.1-201ENST00000507627 697 ntTSL 5 BASIC4.46□□□□□ -1.7
SKA3Q8IX90 AC098869.2-201ENST00000514187 862 ntTSL 3 BASIC4.46□□□□□ -1.7
SKA3Q8IX90 RPS27AP18-201ENST00000515536 459 ntBASIC4.46□□□□□ -1.7
SKA3Q8IX90 IGHVII-44-2-201ENST00000517728 250 ntBASIC4.46□□□□□ -1.7
SKA3Q8IX90 HAGLR-211ENST00000549329 609 ntTSL 4 BASIC4.46□□□□□ -1.7
SKA3Q8IX90 AC025263.2-201ENST00000550437 548 ntAPPRIS P1 TSL 5 BASIC4.46□□□□□ -1.7
SKA3Q8IX90 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC4.46□□□□□ -1.7
SKA3Q8IX90 LINC01580-201ENST00000555255 561 ntTSL 4 BASIC4.46□□□□□ -1.7
SKA3Q8IX90 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC4.46□□□□□ -1.7
SKA3Q8IX90 AC011447.4-201ENST00000587562 111 ntBASIC4.46□□□□□ -1.7
SKA3Q8IX90 AP002884.5-201ENST00000595053 1132 ntBASIC4.46□□□□□ -1.7
SKA3Q8IX90 AC124856.1-201ENST00000600819 896 ntBASIC4.46□□□□□ -1.7
SKA3Q8IX90 AL121890.2-201ENST00000617644 465 ntBASIC4.46□□□□□ -1.7
SKA3Q8IX90 AP000648.2-201ENST00000624182 404 ntBASIC4.46□□□□□ -1.7
SKA3Q8IX90 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
SKA3Q8IX90 ZNF568-214ENST00000616085 3542 ntTSL 5 BASIC4.46□□□□□ -1.7
SKA3Q8IX90 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC4.46□□□□□ -1.7
SKA3Q8IX90 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC4.46□□□□□ -1.7
SKA3Q8IX90 MAPK10-320ENST00000641462 6696 ntBASIC4.46□□□□□ -1.7
SKA3Q8IX90 AC063976.2-201ENST00000425667 3556 ntBASIC4.46□□□□□ -1.7
SKA3Q8IX90 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
SKA3Q8IX90 ALB-219ENST00000621085 1418 ntTSL 5 BASIC4.46□□□□□ -1.7
SKA3Q8IX90 OR51C1P-202ENST00000641159 1444 ntBASIC4.46□□□□□ -1.7
SKA3Q8IX90 OR5AU1-203ENST00000641697 7755 ntAPPRIS P1 BASIC4.46□□□□□ -1.7
SKA3Q8IX90 PLS1-211ENST00000497002 2258 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
SKA3Q8IX90 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC4.46□□□□□ -1.7
SKA3Q8IX90 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
SKA3Q8IX90 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC4.46□□□□□ -1.7
SKA3Q8IX90 AC097461.1-201ENST00000568928 2821 ntBASIC4.45□□□□□ -1.7
SKA3Q8IX90 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC4.45□□□□□ -1.7
SKA3Q8IX90 MYBPC1-203ENST00000392934 3644 ntAPPRIS ALT2 TSL 2 BASIC4.45□□□□□ -1.7
SKA3Q8IX90 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC4.45□□□□□ -1.7
SKA3Q8IX90 ARHGAP5-210ENST00000556611 4824 ntAPPRIS ALT1 TSL 5 BASIC4.45□□□□□ -1.7
SKA3Q8IX90 ART3-203ENST00000355810 1561 ntAPPRIS ALT2 TSL 1 (best) BASIC4.45□□□□□ -1.7
SKA3Q8IX90 CHRM2-203ENST00000445907 5918 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
SKA3Q8IX90 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
SKA3Q8IX90 PAK3-213ENST00000620137 2130 ntTSL 5 BASIC4.45□□□□□ -1.7
SKA3Q8IX90 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
SKA3Q8IX90 U8.4-201ENST00000363626 134 ntBASIC4.45□□□□□ -1.7
SKA3Q8IX90 TEX36-201ENST00000368821 922 ntAPPRIS P3 TSL 1 (best) BASIC4.45□□□□□ -1.7
SKA3Q8IX90 IL6ST-204ENST00000381293 612 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
SKA3Q8IX90 U3.32-201ENST00000408116 212 ntBASIC4.45□□□□□ -1.7
SKA3Q8IX90 CYP3A43-205ENST00000415413 990 ntTSL 5 BASIC4.45□□□□□ -1.7
SKA3Q8IX90 ARAFP1-201ENST00000422172 605 ntBASIC4.45□□□□□ -1.7
SKA3Q8IX90 OR5M12P-201ENST00000423388 929 ntBASIC4.45□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 91.1 ms