Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AC009884.1-201ENST00000522670 545 ntTSL 4 BASIC6.32□□□□□ -1.4
HOXC9P31274 LINC01486-201ENST00000538041 716 ntTSL 2 BASIC6.32□□□□□ -1.4
HOXC9P31274 AGGF1P9-201ENST00000561884 913 ntBASIC6.32□□□□□ -1.4
HOXC9P31274 SS18L2P2-201ENST00000583960 235 ntBASIC6.32□□□□□ -1.4
HOXC9P31274 LINC02073-202ENST00000592081 535 ntTSL 4 BASIC6.32□□□□□ -1.4
HOXC9P31274 AC112211.1-201ENST00000607832 305 ntTSL 3 BASIC6.32□□□□□ -1.4
HOXC9P31274 AC132825.8-201ENST00000640783 297 ntBASIC6.32□□□□□ -1.4
HOXC9P31274 DUSP19-202ENST00000354221 5176 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
HOXC9P31274 ZC3H14-205ENST00000393514 2195 ntTSL 5 BASIC6.32□□□□□ -1.4
HOXC9P31274 RAD17-201ENST00000282891 2135 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
HOXC9P31274 ZFRP1-201ENST00000457579 2970 ntBASIC6.32□□□□□ -1.4
HOXC9P31274 AC037459.2-201ENST00000514980 4076 ntTSL 2 BASIC6.32□□□□□ -1.4
HOXC9P31274 NFKBIZ-203ENST00000394054 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC6.32□□□□□ -1.4
HOXC9P31274 AC106895.2-201ENST00000511291 1824 ntTSL 3 BASIC6.32□□□□□ -1.4
HOXC9P31274 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
HOXC9P31274 RAD17P1-201ENST00000418130 2042 ntBASIC6.32□□□□□ -1.4
HOXC9P31274 CLDND1-208ENST00000503004 2818 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
HOXC9P31274 CYP2C8-210ENST00000535898 1799 ntTSL 2 BASIC6.31□□□□□ -1.4
HOXC9P31274 ZNF611-201ENST00000319783 3153 ntAPPRIS P1 TSL 2 BASIC6.31□□□□□ -1.4
HOXC9P31274 PCDH15-207ENST00000395430 7002 ntTSL 5 BASIC6.31□□□□□ -1.4
HOXC9P31274 CYP4Z1-201ENST00000334194 1906 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
HOXC9P31274 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
HOXC9P31274 EIF3M-208ENST00000531120 5051 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
HOXC9P31274 IL6ST-204ENST00000381293 612 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
HOXC9P31274 RNU6ATAC5P-201ENST00000388104 126 ntBASIC6.31□□□□□ -1.4
HOXC9P31274 NPM1P36-201ENST00000415681 835 ntBASIC6.31□□□□□ -1.4
HOXC9P31274 AL451070.1-201ENST00000430143 439 ntTSL 5 BASIC6.31□□□□□ -1.4
HOXC9P31274 YWHAZP2-201ENST00000440317 728 ntBASIC6.31□□□□□ -1.4
HOXC9P31274 AC003991.1-205ENST00000447758 625 ntTSL 5 BASIC6.31□□□□□ -1.4
HOXC9P31274 NUTF2P7-201ENST00000453086 375 ntBASIC6.31□□□□□ -1.4
HOXC9P31274 NDUFAF4P3-201ENST00000456468 525 ntBASIC6.31□□□□□ -1.4
HOXC9P31274 RNU6ATAC28P-201ENST00000459249 118 ntBASIC6.31□□□□□ -1.4
HOXC9P31274 AL161747.1-201ENST00000480068 358 ntBASIC6.31□□□□□ -1.4
HOXC9P31274 EEF1A1P25-201ENST00000495704 1267 ntBASIC6.31□□□□□ -1.4
HOXC9P31274 AP001960.1-201ENST00000506494 658 ntBASIC6.31□□□□□ -1.4
HOXC9P31274 OR52Z1-201ENST00000510471 897 ntAPPRIS P1 BASIC6.31□□□□□ -1.4
HOXC9P31274 AC020937.1-201ENST00000519677 1013 ntBASIC6.31□□□□□ -1.4
HOXC9P31274 TRAPPC2-208ENST00000519885 561 ntTSL 3 BASIC6.31□□□□□ -1.4
HOXC9P31274 AC090692.1-202ENST00000525363 607 ntTSL 4 BASIC6.31□□□□□ -1.4
HOXC9P31274 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC6.31□□□□□ -1.4
HOXC9P31274 GTF2IP11-201ENST00000526931 420 ntBASIC6.31□□□□□ -1.4
HOXC9P31274 AP002383.3-201ENST00000545958 593 ntTSL 4 BASIC6.31□□□□□ -1.4
HOXC9P31274 ZFAND6-204ENST00000558087 909 ntAPPRIS P1 TSL 5 BASIC6.31□□□□□ -1.4
HOXC9P31274 AC069061.3-201ENST00000582254 823 ntBASIC6.31□□□□□ -1.4
HOXC9P31274 AC087468.1-201ENST00000604365 630 ntBASIC6.31□□□□□ -1.4
HOXC9P31274 AC048338.2-201ENST00000623601 684 ntTSL 5 BASIC6.31□□□□□ -1.4
HOXC9P31274 CAV1-205ENST00000405348 2443 ntAPPRIS ALT1 TSL 5 BASIC6.31□□□□□ -1.4
HOXC9P31274 AP001029.2-203ENST00000589795 4910 ntBASIC6.31□□□□□ -1.4
HOXC9P31274 ADAMTS9-AS1-203ENST00000471990 1606 ntTSL 2 BASIC6.31□□□□□ -1.4
HOXC9P31274 RAPGEF2-201ENST00000264431 6949 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
HOXC9P31274 WDR35-202ENST00000345530 6960 ntAPPRIS ALT1 TSL 1 (best) BASIC6.31□□□□□ -1.4
HOXC9P31274 NRDE2-201ENST00000354366 14208 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
HOXC9P31274 AC120338.1-201ENST00000625074 1541 ntBASIC6.3□□□□□ -1.4
HOXC9P31274 AC108751.5-201ENST00000492880 1336 ntBASIC6.3□□□□□ -1.4
HOXC9P31274 FAM19A1-201ENST00000478136 2014 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
HOXC9P31274 AL590762.2-201ENST00000395798 571 ntBASIC6.3□□□□□ -1.4
HOXC9P31274 PCNPP4-201ENST00000414817 517 ntBASIC6.3□□□□□ -1.4
HOXC9P31274 AC013472.2-201ENST00000416226 306 ntTSL 3 BASIC6.3□□□□□ -1.4
HOXC9P31274 GAPDHP49-201ENST00000421421 961 ntBASIC6.3□□□□□ -1.4
HOXC9P31274 MTUS2-AS2-202ENST00000434779 720 ntTSL 3 BASIC6.3□□□□□ -1.4
HOXC9P31274 DOCK9-AS1-201ENST00000439367 392 ntTSL 3 BASIC6.3□□□□□ -1.4
HOXC9P31274 AL162591.2-201ENST00000449634 317 ntBASIC6.3□□□□□ -1.4
HOXC9P31274 Z95152.1-201ENST00000453556 656 ntBASIC6.3□□□□□ -1.4
HOXC9P31274 AC108751.3-201ENST00000461814 1020 ntBASIC6.3□□□□□ -1.4
HOXC9P31274 AC073073.1-201ENST00000493920 463 ntBASIC6.3□□□□□ -1.4
HOXC9P31274 AC147055.1-201ENST00000509261 750 ntBASIC6.3□□□□□ -1.4
HOXC9P31274 RNU6-362P-201ENST00000516736 90 ntBASIC6.3□□□□□ -1.4
HOXC9P31274 OR8G5-201ENST00000524943 1041 ntBASIC6.3□□□□□ -1.4
HOXC9P31274 AL133166.1-205ENST00000548306 569 ntTSL 4 BASIC6.3□□□□□ -1.4
HOXC9P31274 AC126178.1-201ENST00000548722 926 ntTSL 2 BASIC6.3□□□□□ -1.4
HOXC9P31274 LINC00511-212ENST00000581183 657 ntTSL 3 BASIC6.3□□□□□ -1.4
HOXC9P31274 KPNA2P3-201ENST00000584190 848 ntBASIC6.3□□□□□ -1.4
HOXC9P31274 AL118556.2-201ENST00000614375 824 ntBASIC6.3□□□□□ -1.4
HOXC9P31274 AP003400.2-201ENST00000624036 666 ntBASIC6.3□□□□□ -1.4
HOXC9P31274 NRXN1-223ENST00000625891 1164 ntTSL 4 BASIC6.3□□□□□ -1.4
HOXC9P31274 LEUTX-202ENST00000638280 667 ntAPPRIS P1 TSL 3 BASIC6.3□□□□□ -1.4
HOXC9P31274 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC6.3□□□□□ -1.4
HOXC9P31274 MID2-202ENST00000443968 2251 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
HOXC9P31274 OFD1P8Y-201ENST00000449148 1433 ntBASIC6.3□□□□□ -1.4
HOXC9P31274 AC107953.2-201ENST00000518362 1408 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
HOXC9P31274 AC139426.3-201ENST00000605648 2059 ntBASIC6.3□□□□□ -1.4
HOXC9P31274 OR14L1P-202ENST00000641545 3009 ntBASIC6.3□□□□□ -1.4
HOXC9P31274 AP005432.1-201ENST00000580891 3485 ntBASIC6.3□□□□□ -1.4
HOXC9P31274 MAP3K19-204ENST00000392915 5030 ntAPPRIS P3 TSL 5 BASIC6.3□□□□□ -1.4
HOXC9P31274 A1CF-206ENST00000395489 9517 ntTSL 2 BASIC6.29□□□□□ -1.4
HOXC9P31274 KCNQ3-205ENST00000621976 10659 ntAPPRIS ALT2 TSL 5 BASIC6.29□□□□□ -1.4
HOXC9P31274 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC6.29□□□□□ -1.4
HOXC9P31274 CRYZ-203ENST00000370871 1292 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
HOXC9P31274 CARD16-201ENST00000375704 613 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
HOXC9P31274 MIR659-201ENST00000384963 97 ntBASIC6.29□□□□□ -1.4
HOXC9P31274 RPL21P67-201ENST00000402896 478 ntBASIC6.29□□□□□ -1.4
HOXC9P31274 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC6.29□□□□□ -1.4
HOXC9P31274 AC011276.1-201ENST00000469688 323 ntBASIC6.29□□□□□ -1.4
HOXC9P31274 CFAP44-AS1-202ENST00000498480 686 ntTSL 3 BASIC6.29□□□□□ -1.4
HOXC9P31274 AC010230.1-202ENST00000506265 592 ntTSL 5 BASIC6.29□□□□□ -1.4
HOXC9P31274 AC007016.1-201ENST00000512110 244 ntBASIC6.29□□□□□ -1.4
HOXC9P31274 RPL23AP53-201ENST00000521854 457 ntBASIC6.29□□□□□ -1.4
HOXC9P31274 CARD16-203ENST00000525374 503 ntTSL 3 BASIC6.29□□□□□ -1.4
HOXC9P31274 C11orf74-210ENST00000534635 801 ntAPPRIS ALT2 TSL 2 BASIC6.29□□□□□ -1.4
HOXC9P31274 AC007495.2-201ENST00000562822 459 ntTSL 3 BASIC6.29□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 87.9 ms