Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AC005033.1-201ENST00000428904 813 ntBASIC4.64□□□□□ -1.67
SDC1P18827 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC4.64□□□□□ -1.67
SDC1P18827 AP001434.1-201ENST00000444977 287 ntTSL 3 BASIC4.64□□□□□ -1.67
SDC1P18827 IMMP2L-205ENST00000450877 761 ntTSL 2 BASIC4.64□□□□□ -1.67
SDC1P18827 AC239798.3-201ENST00000454459 408 ntBASIC4.64□□□□□ -1.67
SDC1P18827 CYCSP34-201ENST00000458172 304 ntBASIC4.64□□□□□ -1.67
SDC1P18827 AC112206.1-201ENST00000468416 477 ntBASIC4.64□□□□□ -1.67
SDC1P18827 AC073358.1-201ENST00000505671 684 ntBASIC4.64□□□□□ -1.67
SDC1P18827 AC010387.1-201ENST00000507526 487 ntTSL 2 BASIC4.64□□□□□ -1.67
SDC1P18827 RNU6-709P-201ENST00000517257 104 ntBASIC4.64□□□□□ -1.67
SDC1P18827 KCTD21-AS1-206ENST00000532831 856 ntTSL 2 BASIC4.64□□□□□ -1.67
SDC1P18827 AC007225.2-201ENST00000562529 256 ntBASIC4.64□□□□□ -1.67
SDC1P18827 MIR762HG-201ENST00000564901 648 ntTSL 2 BASIC4.64□□□□□ -1.67
SDC1P18827 AC027281.1-201ENST00000574178 758 ntBASIC4.64□□□□□ -1.67
SDC1P18827 AC104984.2-201ENST00000582938 385 ntTSL 3 BASIC4.64□□□□□ -1.67
SDC1P18827 AC002384.2-201ENST00000636036 790 ntTSL 3 BASIC4.64□□□□□ -1.67
SDC1P18827 AC006453.5-201ENST00000636451 619 ntBASIC4.64□□□□□ -1.67
SDC1P18827 MIR4302-201ENST00000638058 60 ntBASIC4.64□□□□□ -1.67
SDC1P18827 LINC01739-205ENST00000641890 573 ntBASIC4.64□□□□□ -1.67
SDC1P18827 DTNA-202ENST00000283365 6522 ntTSL 5 BASIC4.64□□□□□ -1.67
SDC1P18827 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC4.64□□□□□ -1.67
SDC1P18827 ZNF652P1-201ENST00000442420 1309 ntBASIC4.64□□□□□ -1.67
SDC1P18827 OBSCN-205ENST00000422127 24060 ntTSL 5 BASIC4.64□□□□□ -1.67
SDC1P18827 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC4.64□□□□□ -1.67
SDC1P18827 OBSCN-210ENST00000570156 26925 ntAPPRIS P1 TSL 5 BASIC4.64□□□□□ -1.67
SDC1P18827 AL359922.3-201ENST00000624779 1670 ntBASIC4.64□□□□□ -1.67
SDC1P18827 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC4.63□□□□□ -1.67
SDC1P18827 PTPRO-203ENST00000442921 3030 ntAPPRIS ALT2 TSL 1 (best) BASIC4.63□□□□□ -1.67
SDC1P18827 AL672167.1-205ENST00000641112 3080 ntBASIC4.63□□□□□ -1.67
SDC1P18827 RNASE6-201ENST00000304677 1061 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
SDC1P18827 RPL23P2-201ENST00000320371 421 ntBASIC4.63□□□□□ -1.67
SDC1P18827 RNU6-618P-201ENST00000363518 112 ntBASIC4.63□□□□□ -1.67
SDC1P18827 RNU6-819P-201ENST00000364116 107 ntBASIC4.63□□□□□ -1.67
SDC1P18827 RNU1-106P-201ENST00000384382 164 ntBASIC4.63□□□□□ -1.67
SDC1P18827 Z97832.1-201ENST00000402490 328 ntBASIC4.63□□□□□ -1.67
SDC1P18827 GLS-204ENST00000409428 816 ntTSL 2 BASIC4.63□□□□□ -1.67
SDC1P18827 AC002524.1-201ENST00000411687 547 ntBASIC4.63□□□□□ -1.67
SDC1P18827 SEPT7P8-201ENST00000413308 775 ntBASIC4.63□□□□□ -1.67
SDC1P18827 AC007064.3-201ENST00000422608 359 ntBASIC4.63□□□□□ -1.67
SDC1P18827 AJ239321.1-201ENST00000424255 564 ntBASIC4.63□□□□□ -1.67
SDC1P18827 AC018467.1-203ENST00000440785 506 ntTSL 3 BASIC4.63□□□□□ -1.67
SDC1P18827 MRPL48P1-201ENST00000445390 636 ntBASIC4.63□□□□□ -1.67
SDC1P18827 AC026316.2-201ENST00000473110 263 ntTSL 3 BASIC4.63□□□□□ -1.67
SDC1P18827 AK5-208ENST00000478255 556 ntTSL 2 BASIC4.63□□□□□ -1.67
SDC1P18827 RN7SL319P-201ENST00000480656 221 ntBASIC4.63□□□□□ -1.67
SDC1P18827 AC016746.1-201ENST00000489557 831 ntTSL 2 BASIC4.63□□□□□ -1.67
SDC1P18827 RN7SL558P-201ENST00000497468 299 ntBASIC4.63□□□□□ -1.67
SDC1P18827 FXN-205ENST00000498653 856 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
SDC1P18827 MRPS33P2-201ENST00000507850 322 ntBASIC4.63□□□□□ -1.67
SDC1P18827 AL078612.2-201ENST00000525133 646 ntTSL 3 BASIC4.63□□□□□ -1.67
SDC1P18827 AC022832.1-201ENST00000530718 645 ntBASIC4.63□□□□□ -1.67
SDC1P18827 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC4.63□□□□□ -1.67
SDC1P18827 LINC02443-204ENST00000544717 754 ntTSL 5 BASIC4.63□□□□□ -1.67
SDC1P18827 AC006511.5-202ENST00000546339 1198 ntTSL 5 BASIC4.63□□□□□ -1.67
SDC1P18827 AL049839.1-201ENST00000556151 657 ntBASIC4.63□□□□□ -1.67
SDC1P18827 AC134312.3-201ENST00000566155 213 ntTSL 2 BASIC4.63□□□□□ -1.67
SDC1P18827 AC009139.2-201ENST00000569032 566 ntTSL 5 BASIC4.63□□□□□ -1.67
SDC1P18827 MIR4489-201ENST00000578869 62 ntBASIC4.63□□□□□ -1.67
SDC1P18827 SNORA74C-1-201ENST00000580726 201 ntBASIC4.63□□□□□ -1.67
SDC1P18827 AC024592.1-202ENST00000590441 341 ntTSL 3 BASIC4.63□□□□□ -1.67
SDC1P18827 AC010320.2-203ENST00000601745 574 ntTSL 4 BASIC4.63□□□□□ -1.67
SDC1P18827 AC022387.2-201ENST00000604050 448 ntBASIC4.63□□□□□ -1.67
SDC1P18827 AC010424.2-201ENST00000607594 443 ntBASIC4.63□□□□□ -1.67
SDC1P18827 AC005162.3-202ENST00000609495 483 ntTSL 5 BASIC4.63□□□□□ -1.67
SDC1P18827 AC093799.2-201ENST00000610062 578 ntBASIC4.63□□□□□ -1.67
SDC1P18827 AC022467.1-201ENST00000614738 749 ntBASIC4.63□□□□□ -1.67
SDC1P18827 HNF1A-AS1-205ENST00000619441 343 ntTSL 3 BASIC4.63□□□□□ -1.67
SDC1P18827 AC015804.1-201ENST00000622935 435 ntBASIC4.63□□□□□ -1.67
SDC1P18827 OR10X1-201ENST00000623167 981 ntAPPRIS P1 BASIC4.63□□□□□ -1.67
SDC1P18827 AL353662.3-201ENST00000625131 237 ntBASIC4.63□□□□□ -1.67
SDC1P18827 LINC02246-204ENST00000625278 740 ntTSL 5 BASIC4.63□□□□□ -1.67
SDC1P18827 AL138828.1-201ENST00000626414 291 ntTSL 5 BASIC4.63□□□□□ -1.67
SDC1P18827 OR2L13-202ENST00000641714 1948 ntAPPRIS P1 BASIC4.63□□□□□ -1.67
SDC1P18827 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC4.63□□□□□ -1.67
SDC1P18827 CHRM2-203ENST00000445907 5918 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
SDC1P18827 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC4.63□□□□□ -1.67
SDC1P18827 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC4.63□□□□□ -1.67
SDC1P18827 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
SDC1P18827 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC4.63□□□□□ -1.67
SDC1P18827 LCA5L-203ENST00000380671 2080 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
SDC1P18827 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
SDC1P18827 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC4.62□□□□□ -1.67
SDC1P18827 INTS6-220ENST00000497989 3022 ntTSL 2 BASIC4.62□□□□□ -1.67
SDC1P18827 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC4.62□□□□□ -1.67
SDC1P18827 SOCS5P3-201ENST00000425115 1576 ntBASIC4.62□□□□□ -1.67
SDC1P18827 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC4.62□□□□□ -1.67
SDC1P18827 TRPC4-205ENST00000379679 2475 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
SDC1P18827 SLC26A5-208ENST00000393730 2498 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
SDC1P18827 DDHD2-202ENST00000517385 4113 ntTSL 2 BASIC4.62□□□□□ -1.67
SDC1P18827 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
SDC1P18827 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC4.62□□□□□ -1.67
SDC1P18827 BDH2-201ENST00000296424 1126 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
SDC1P18827 AL021331.1-201ENST00000402817 582 ntBASIC4.62□□□□□ -1.67
SDC1P18827 AL139039.2-201ENST00000407436 479 ntBASIC4.62□□□□□ -1.67
SDC1P18827 TRIM60P17-201ENST00000415181 719 ntBASIC4.62□□□□□ -1.67
SDC1P18827 AL035604.1-201ENST00000416481 531 ntTSL 3 BASIC4.62□□□□□ -1.67
SDC1P18827 VN1R37P-201ENST00000419096 748 ntBASIC4.62□□□□□ -1.67
SDC1P18827 FABP7P2-201ENST00000429946 379 ntBASIC4.62□□□□□ -1.67
SDC1P18827 AC092159.1-201ENST00000433724 493 ntTSL 2 BASIC4.62□□□□□ -1.67
SDC1P18827 GYPE-202ENST00000437468 499 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 89.9 ms