Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 TBCA-207ENST00000520039 157 ntTSL 3 BASIC4.49□□□□□ -1.69
SKA3Q8IX90 AC079209.1-202ENST00000521953 522 ntTSL 3 BASIC4.49□□□□□ -1.69
SKA3Q8IX90 AC073023.1-201ENST00000522896 773 ntTSL 5 BASIC4.49□□□□□ -1.69
SKA3Q8IX90 BMPR1APS2-201ENST00000527904 1012 ntBASIC4.49□□□□□ -1.69
SKA3Q8IX90 PRR4-212ENST00000544994 326 ntAPPRIS ALT2 TSL 1 (best) BASIC4.49□□□□□ -1.69
SKA3Q8IX90 BCAR4-204ENST00000573319 1273 ntTSL 5 BASIC4.49□□□□□ -1.69
SKA3Q8IX90 NPM1P45-201ENST00000583151 559 ntBASIC4.49□□□□□ -1.69
SKA3Q8IX90 AC011444.3-201ENST00000588342 325 ntTSL 3 BASIC4.49□□□□□ -1.69
SKA3Q8IX90 AC092683.1-203ENST00000594050 654 ntTSL 5 BASIC4.49□□□□□ -1.69
SKA3Q8IX90 AC067838.1-201ENST00000606064 577 ntBASIC4.49□□□□□ -1.69
SKA3Q8IX90 AL024498.1-201ENST00000606522 1100 ntTSL 3 BASIC4.49□□□□□ -1.69
SKA3Q8IX90 AP005432.2-201ENST00000608162 586 ntBASIC4.49□□□□□ -1.69
SKA3Q8IX90 UTS2B-201ENST00000340524 2395 ntAPPRIS P1 TSL 2 BASIC4.49□□□□□ -1.69
SKA3Q8IX90 ANKRD30A-204ENST00000602533 4458 ntAPPRIS ALT2 TSL 5 BASIC4.49□□□□□ -1.69
SKA3Q8IX90 ENPP3-201ENST00000357639 3162 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
SKA3Q8IX90 CR788268.1-201ENST00000603931 1809 ntBASIC4.49□□□□□ -1.69
SKA3Q8IX90 OR14L1P-202ENST00000641545 3009 ntBASIC4.48□□□□□ -1.69
SKA3Q8IX90 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
SKA3Q8IX90 MOCS2-203ENST00000450852 1337 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
SKA3Q8IX90 NAMPTP1-201ENST00000440465 2514 ntBASIC4.48□□□□□ -1.69
SKA3Q8IX90 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC4.48□□□□□ -1.69
SKA3Q8IX90 LINC02302-201ENST00000556405 2904 ntTSL 2 BASIC4.48□□□□□ -1.69
SKA3Q8IX90 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC4.48□□□□□ -1.69
SKA3Q8IX90 MUM1L1-202ENST00000357175 4173 ntAPPRIS P1 TSL 2 BASIC4.48□□□□□ -1.69
SKA3Q8IX90 C10orf120-201ENST00000329446 1064 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
SKA3Q8IX90 RN7SKP113-201ENST00000363891 295 ntBASIC4.48□□□□□ -1.69
SKA3Q8IX90 AC012358.3-203ENST00000366287 1110 ntTSL 3 BASIC4.48□□□□□ -1.69
SKA3Q8IX90 MIR1178-201ENST00000408396 91 ntBASIC4.48□□□□□ -1.69
SKA3Q8IX90 U3.36-201ENST00000408418 213 ntBASIC4.48□□□□□ -1.69
SKA3Q8IX90 RN7SKP114-201ENST00000410327 279 ntBASIC4.48□□□□□ -1.69
SKA3Q8IX90 SNORA79B-201ENST00000410557 148 ntBASIC4.48□□□□□ -1.69
SKA3Q8IX90 RN7SKP273-201ENST00000411392 314 ntBASIC4.48□□□□□ -1.69
SKA3Q8IX90 AC023347.1-202ENST00000419223 440 ntTSL 5 BASIC4.48□□□□□ -1.69
SKA3Q8IX90 LINC00626-201ENST00000420691 955 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
SKA3Q8IX90 BX510359.3-201ENST00000422168 306 ntBASIC4.48□□□□□ -1.69
SKA3Q8IX90 MTCO1P51-201ENST00000427672 1060 ntBASIC4.48□□□□□ -1.69
SKA3Q8IX90 AL163193.1-201ENST00000444895 788 ntBASIC4.48□□□□□ -1.69
SKA3Q8IX90 AL356390.1-201ENST00000455684 397 ntBASIC4.48□□□□□ -1.69
SKA3Q8IX90 AC074386.1-201ENST00000476560 767 ntBASIC4.48□□□□□ -1.69
SKA3Q8IX90 LINC01192-206ENST00000489012 818 ntTSL 5 BASIC4.48□□□□□ -1.69
SKA3Q8IX90 FGB-207ENST00000509493 1164 ntTSL 5 BASIC4.48□□□□□ -1.69
SKA3Q8IX90 SCARNA21.2-201ENST00000516600 166 ntBASIC4.48□□□□□ -1.69
SKA3Q8IX90 E2F5-204ENST00000517476 1094 ntTSL 2 BASIC4.48□□□□□ -1.69
SKA3Q8IX90 IGLV2-28-201ENST00000520681 304 ntBASIC4.48□□□□□ -1.69
SKA3Q8IX90 AL355112.1-201ENST00000550309 1236 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
SKA3Q8IX90 NOP10-202ENST00000557912 436 ntTSL 2 BASIC4.48□□□□□ -1.69
SKA3Q8IX90 AC084759.1-201ENST00000561168 290 ntBASIC4.48□□□□□ -1.69
SKA3Q8IX90 AC006504.5-201ENST00000588122 655 ntTSL 5 BASIC4.48□□□□□ -1.69
SKA3Q8IX90 TAS2R6P-201ENST00000605022 826 ntBASIC4.48□□□□□ -1.69
SKA3Q8IX90 MIR4435-2HG-220ENST00000609902 603 ntTSL 3 BASIC4.48□□□□□ -1.69
SKA3Q8IX90 AC037198.3-201ENST00000616754 526 ntBASIC4.48□□□□□ -1.69
SKA3Q8IX90 ZNF75A-210ENST00000617839 1225 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
SKA3Q8IX90 AC015914.2-201ENST00000618167 288 ntBASIC4.48□□□□□ -1.69
SKA3Q8IX90 Metazoa_SRP.179-201ENST00000619020 241 ntBASIC4.48□□□□□ -1.69
SKA3Q8IX90 AF117829.2-201ENST00000619538 361 ntBASIC4.48□□□□□ -1.69
SKA3Q8IX90 AL359094.1-201ENST00000627944 566 ntTSL 5 BASIC4.48□□□□□ -1.69
SKA3Q8IX90 ZBTB38-201ENST00000321464 3588 ntAPPRIS P1 BASIC4.48□□□□□ -1.69
SKA3Q8IX90 CKAP5-210ENST00000529230 7121 ntAPPRIS P1 TSL 5 BASIC4.48□□□□□ -1.69
SKA3Q8IX90 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC4.48□□□□□ -1.69
SKA3Q8IX90 AC115220.1-201ENST00000330020 1453 ntAPPRIS P1 TSL 3 BASIC4.48□□□□□ -1.69
SKA3Q8IX90 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC4.48□□□□□ -1.69
SKA3Q8IX90 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
SKA3Q8IX90 RNF217-202ENST00000368414 1771 ntTSL 2 BASIC4.48□□□□□ -1.69
SKA3Q8IX90 SLC38A9-218ENST00000512595 1756 ntTSL 2 BASIC4.48□□□□□ -1.69
SKA3Q8IX90 C4BPAP1-201ENST00000415474 1893 ntBASIC4.47□□□□□ -1.69
SKA3Q8IX90 DTNA-229ENST00000598142 2509 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
SKA3Q8IX90 DDX18P4-201ENST00000511690 1966 ntBASIC4.47□□□□□ -1.69
SKA3Q8IX90 CREM-202ENST00000342105 1541 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
SKA3Q8IX90 OPRM1-215ENST00000520708 1519 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
SKA3Q8IX90 STXBP4-202ENST00000398391 2160 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
SKA3Q8IX90 AC027228.2-201ENST00000567141 2154 ntBASIC4.47□□□□□ -1.69
SKA3Q8IX90 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC4.47□□□□□ -1.69
SKA3Q8IX90 OR9Q2-202ENST00000641291 3774 ntAPPRIS P1 BASIC4.47□□□□□ -1.69
SKA3Q8IX90 AL353625.1-202ENST00000366273 571 ntBASIC4.47□□□□□ -1.69
SKA3Q8IX90 S100A9-201ENST00000368738 577 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
SKA3Q8IX90 SNORA2.3-201ENST00000383920 135 ntBASIC4.47□□□□□ -1.69
SKA3Q8IX90 DNAJA1P4-201ENST00000406473 1166 ntBASIC4.47□□□□□ -1.69
SKA3Q8IX90 LINC01661-201ENST00000415910 708 ntTSL 3 BASIC4.47□□□□□ -1.69
SKA3Q8IX90 COX6CP13-201ENST00000428703 226 ntBASIC4.47□□□□□ -1.69
SKA3Q8IX90 STXBP5-AS1-204ENST00000431143 644 ntTSL 3 BASIC4.47□□□□□ -1.69
SKA3Q8IX90 AL450992.2-201ENST00000434182 506 ntTSL 5 BASIC4.47□□□□□ -1.69
SKA3Q8IX90 AL392003.1-201ENST00000434394 243 ntBASIC4.47□□□□□ -1.69
SKA3Q8IX90 EEF1B2P5-201ENST00000444820 548 ntBASIC4.47□□□□□ -1.69
SKA3Q8IX90 AC091180.1-201ENST00000462104 372 ntBASIC4.47□□□□□ -1.69
SKA3Q8IX90 AC005532.2-201ENST00000467154 373 ntBASIC4.47□□□□□ -1.69
SKA3Q8IX90 AC097484.1-201ENST00000471148 389 ntBASIC4.47□□□□□ -1.69
SKA3Q8IX90 RN7SL177P-201ENST00000476596 299 ntBASIC4.47□□□□□ -1.69
SKA3Q8IX90 RN7SL727P-201ENST00000482164 296 ntBASIC4.47□□□□□ -1.69
SKA3Q8IX90 OR9N1P-201ENST00000491296 333 ntBASIC4.47□□□□□ -1.69
SKA3Q8IX90 AC126768.1-201ENST00000511698 490 ntTSL 3 BASIC4.47□□□□□ -1.69
SKA3Q8IX90 AC010425.1-201ENST00000511734 554 ntTSL 4 BASIC4.47□□□□□ -1.69
SKA3Q8IX90 AC020551.1-201ENST00000512036 539 ntTSL 3 BASIC4.47□□□□□ -1.69
SKA3Q8IX90 AC093305.1-201ENST00000514105 522 ntTSL 5 BASIC4.47□□□□□ -1.69
SKA3Q8IX90 AC018682.2-201ENST00000517716 399 ntTSL 5 BASIC4.47□□□□□ -1.69
SKA3Q8IX90 AC134698.5-201ENST00000519444 336 ntBASIC4.47□□□□□ -1.69
SKA3Q8IX90 PPP1R42-212ENST00000522909 1282 ntAPPRIS ALT2 TSL 5 BASIC4.47□□□□□ -1.69
SKA3Q8IX90 AL078612.2-201ENST00000525133 646 ntTSL 3 BASIC4.47□□□□□ -1.69
SKA3Q8IX90 LINC02553-201ENST00000529088 734 ntTSL 5 BASIC4.47□□□□□ -1.69
SKA3Q8IX90 AC022832.1-201ENST00000530718 645 ntBASIC4.47□□□□□ -1.69
SKA3Q8IX90 OR10G5P-201ENST00000532733 358 ntBASIC4.47□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 118.2 ms