Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 LINC02265-201ENST00000510551 957 ntTSL 2 BASIC9.49□□□□□ -0.89
SHROOM4Q9ULL8 AC105129.1-201ENST00000560250 297 ntBASIC9.49□□□□□ -0.89
SHROOM4Q9ULL8 AC090403.1-202ENST00000582108 833 ntTSL 3 BASIC9.49□□□□□ -0.89
SHROOM4Q9ULL8 AC007786.3-201ENST00000615154 596 ntBASIC9.49□□□□□ -0.89
SHROOM4Q9ULL8 CTSLP2-203ENST00000628708 493 ntTSL 5 BASIC9.49□□□□□ -0.89
SHROOM4Q9ULL8 AC010928.1-201ENST00000592477 1447 ntBASIC9.49□□□□□ -0.89
SHROOM4Q9ULL8 AKAP6-213ENST00000557354 5259 ntTSL 1 (best) BASIC9.49□□□□□ -0.89
SHROOM4Q9ULL8 VPS50-202ENST00000305866 3613 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
SHROOM4Q9ULL8 AC104118.1-201ENST00000607625 1589 ntBASIC9.49□□□□□ -0.89
SHROOM4Q9ULL8 DDX4-211ENST00000511853 1984 ntTSL 2 BASIC9.49□□□□□ -0.89
SHROOM4Q9ULL8 ARHGAP20-206ENST00000533353 6066 ntAPPRIS ALT2 TSL 1 (best) BASIC9.49□□□□□ -0.89
SHROOM4Q9ULL8 ZNF568-214ENST00000616085 3542 ntTSL 5 BASIC9.49□□□□□ -0.89
SHROOM4Q9ULL8 ZFP14-201ENST00000270001 7489 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
SHROOM4Q9ULL8 AL355488.2-201ENST00000609909 2850 ntBASIC9.48□□□□□ -0.89
SHROOM4Q9ULL8 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
SHROOM4Q9ULL8 RBM28-201ENST00000223073 15507 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
SHROOM4Q9ULL8 ADH6-202ENST00000394897 3337 ntTSL 2 BASIC9.48□□□□□ -0.89
SHROOM4Q9ULL8 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
SHROOM4Q9ULL8 AC005154.2-201ENST00000438110 379 ntBASIC9.48□□□□□ -0.89
SHROOM4Q9ULL8 AC000124.1-201ENST00000448311 957 ntTSL 2 BASIC9.48□□□□□ -0.89
SHROOM4Q9ULL8 RN7SL443P-201ENST00000464331 290 ntBASIC9.48□□□□□ -0.89
SHROOM4Q9ULL8 SDHAF2-208ENST00000543265 438 ntTSL 5 BASIC9.48□□□□□ -0.89
SHROOM4Q9ULL8 AC084824.1-201ENST00000550917 1005 ntBASIC9.48□□□□□ -0.89
SHROOM4Q9ULL8 MIR7515HG-226ENST00000588330 1055 ntTSL 5 BASIC9.48□□□□□ -0.89
SHROOM4Q9ULL8 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC9.48□□□□□ -0.89
SHROOM4Q9ULL8 AL121873.1-201ENST00000616013 524 ntBASIC9.48□□□□□ -0.89
SHROOM4Q9ULL8 PARP15-206ENST00000493645 1311 ntTSL 1 (best) BASIC9.48□□□□□ -0.89
SHROOM4Q9ULL8 BCLAF1-201ENST00000353331 7110 ntTSL 5 BASIC9.48□□□□□ -0.89
SHROOM4Q9ULL8 OFD1P8Y-201ENST00000449148 1433 ntBASIC9.48□□□□□ -0.89
SHROOM4Q9ULL8 SAMMSON-226ENST00000642089 1582 ntBASIC9.48□□□□□ -0.89
SHROOM4Q9ULL8 ZBTB25-201ENST00000394715 2094 ntAPPRIS P1 TSL 2 BASIC9.48□□□□□ -0.89
SHROOM4Q9ULL8 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC9.48□□□□□ -0.89
SHROOM4Q9ULL8 AL022323.4-201ENST00000623980 13120 ntBASIC9.48□□□□□ -0.89
SHROOM4Q9ULL8 KCNMB2-210ENST00000617329 2214 ntTSL 2 BASIC9.48□□□□□ -0.89
SHROOM4Q9ULL8 CACNA1E-204ENST00000367567 14757 ntAPPRIS ALT2 TSL 5 BASIC9.48□□□□□ -0.89
SHROOM4Q9ULL8 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC9.48□□□□□ -0.89
SHROOM4Q9ULL8 CDON-202ENST00000392693 9138 ntAPPRIS ALT2 TSL 1 (best) BASIC9.47□□□□□ -0.89
SHROOM4Q9ULL8 RN7SKP153-201ENST00000365026 316 ntBASIC9.47□□□□□ -0.89
SHROOM4Q9ULL8 RNA5SP223-201ENST00000365174 120 ntBASIC9.47□□□□□ -0.89
SHROOM4Q9ULL8 SNORA70.10-201ENST00000384515 134 ntBASIC9.47□□□□□ -0.89
SHROOM4Q9ULL8 TFPI-204ENST00000409676 1119 ntTSL 1 (best) BASIC9.47□□□□□ -0.89
SHROOM4Q9ULL8 AL512641.1-201ENST00000427232 548 ntTSL 3 BASIC9.47□□□□□ -0.89
SHROOM4Q9ULL8 CYCSP11-201ENST00000436426 315 ntBASIC9.47□□□□□ -0.89
SHROOM4Q9ULL8 RPS29P9-201ENST00000440360 171 ntBASIC9.47□□□□□ -0.89
SHROOM4Q9ULL8 AC022034.3-201ENST00000471393 478 ntBASIC9.47□□□□□ -0.89
SHROOM4Q9ULL8 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC9.47□□□□□ -0.89
SHROOM4Q9ULL8 AP003080.1-202ENST00000526526 915 ntBASIC9.47□□□□□ -0.89
SHROOM4Q9ULL8 OR5M2P-201ENST00000529003 936 ntBASIC9.47□□□□□ -0.89
SHROOM4Q9ULL8 DPPA3P2-201ENST00000553589 478 ntBASIC9.47□□□□□ -0.89
SHROOM4Q9ULL8 ST20-203ENST00000562759 694 ntAPPRIS P1 TSL 2 BASIC9.47□□□□□ -0.89
SHROOM4Q9ULL8 AC011468.1-201ENST00000569091 675 ntTSL 1 (best) BASIC9.47□□□□□ -0.89
SHROOM4Q9ULL8 LINC01676-204ENST00000595309 871 ntTSL 5 BASIC9.47□□□□□ -0.89
SHROOM4Q9ULL8 MIR92B-201ENST00000607575 96 ntBASIC9.47□□□□□ -0.89
SHROOM4Q9ULL8 AL158066.1-201ENST00000451298 3796 ntTSL 2 BASIC9.47□□□□□ -0.89
SHROOM4Q9ULL8 NAMPTP1-201ENST00000440465 2514 ntBASIC9.47□□□□□ -0.89
SHROOM4Q9ULL8 LRRC19-201ENST00000380055 3609 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
SHROOM4Q9ULL8 KIAA1328-201ENST00000280020 4853 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
SHROOM4Q9ULL8 SLC38A1-211ENST00000612161 1607 ntTSL 5 BASIC9.47□□□□□ -0.89
SHROOM4Q9ULL8 LIMA1-212ENST00000552491 2652 ntAPPRIS ALT2 TSL 2 BASIC9.47□□□□□ -0.89
SHROOM4Q9ULL8 HEATR1-203ENST00000366582 8447 ntAPPRIS P1 TSL 5 BASIC9.47□□□□□ -0.89
SHROOM4Q9ULL8 AC123767.1-201ENST00000519537 1439 ntTSL 5 BASIC9.47□□□□□ -0.89
SHROOM4Q9ULL8 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC9.47□□□□□ -0.89
SHROOM4Q9ULL8 PRKAA1-204ENST00000397128 5088 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
SHROOM4Q9ULL8 SLC4A10-202ENST00000375514 5710 ntAPPRIS ALT1 TSL 2 BASIC9.47□□□□□ -0.89
SHROOM4Q9ULL8 RSU1P3-201ENST00000412878 835 ntBASIC9.47□□□□□ -0.89
SHROOM4Q9ULL8 AL591848.1-201ENST00000413092 322 ntBASIC9.47□□□□□ -0.89
SHROOM4Q9ULL8 NRBF2P3-201ENST00000432731 865 ntBASIC9.47□□□□□ -0.89
SHROOM4Q9ULL8 AC073143.1-201ENST00000436316 395 ntBASIC9.47□□□□□ -0.89
SHROOM4Q9ULL8 AC136489.1-201ENST00000438181 717 ntTSL 3 BASIC9.47□□□□□ -0.89
SHROOM4Q9ULL8 AC090204.1-202ENST00000500843 737 ntTSL 5 BASIC9.47□□□□□ -0.89
SHROOM4Q9ULL8 MIR100HG-221ENST00000534297 572 ntTSL 4 BASIC9.47□□□□□ -0.89
SHROOM4Q9ULL8 RN7SL290P-201ENST00000578661 300 ntBASIC9.47□□□□□ -0.89
SHROOM4Q9ULL8 AC006504.2-201ENST00000589471 458 ntTSL 3 BASIC9.47□□□□□ -0.89
SHROOM4Q9ULL8 AC097376.2-202ENST00000608345 433 ntTSL 3 BASIC9.47□□□□□ -0.89
SHROOM4Q9ULL8 Xist_exon4.1-201ENST00000615964 126 ntBASIC9.47□□□□□ -0.89
SHROOM4Q9ULL8 AC005154.1-203ENST00000626245 451 ntTSL 5 BASIC9.47□□□□□ -0.89
SHROOM4Q9ULL8 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC9.46□□□□□ -0.89
SHROOM4Q9ULL8 GABRA1-215ENST00000636573 2262 ntAPPRIS P1 TSL 5 BASIC9.46□□□□□ -0.89
SHROOM4Q9ULL8 LINC00550-201ENST00000629293 3434 ntTSL 1 (best) BASIC9.46□□□□□ -0.89
SHROOM4Q9ULL8 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC9.46□□□□□ -0.9
SHROOM4Q9ULL8 NAV1-201ENST00000367295 11645 ntTSL 1 (best) BASIC9.46□□□□□ -0.9
SHROOM4Q9ULL8 CYLD-201ENST00000311559 5371 ntTSL 5 BASIC9.46□□□□□ -0.9
SHROOM4Q9ULL8 RNA5SP447-201ENST00000363749 119 ntBASIC9.46□□□□□ -0.9
SHROOM4Q9ULL8 MIR134-201ENST00000385258 73 ntBASIC9.46□□□□□ -0.9
SHROOM4Q9ULL8 RNU6ATAC34P-201ENST00000408879 121 ntBASIC9.46□□□□□ -0.9
SHROOM4Q9ULL8 LINC00626-201ENST00000420691 955 ntTSL 1 (best) BASIC9.46□□□□□ -0.9
SHROOM4Q9ULL8 RPL7AP49-201ENST00000429522 581 ntBASIC9.46□□□□□ -0.9
SHROOM4Q9ULL8 AL591438.1-201ENST00000433508 581 ntBASIC9.46□□□□□ -0.9
SHROOM4Q9ULL8 OR1H1P-201ENST00000448731 937 ntBASIC9.46□□□□□ -0.9
SHROOM4Q9ULL8 RN7SL319P-201ENST00000480656 221 ntBASIC9.46□□□□□ -0.9
SHROOM4Q9ULL8 AC013356.1-201ENST00000489027 564 ntBASIC9.46□□□□□ -0.9
SHROOM4Q9ULL8 GNPDA2-202ENST00000507534 1050 ntTSL 2 BASIC9.46□□□□□ -0.9
SHROOM4Q9ULL8 KPNA2P3-201ENST00000584190 848 ntBASIC9.46□□□□□ -0.9
SHROOM4Q9ULL8 AC067959.1-201ENST00000604334 379 ntBASIC9.46□□□□□ -0.9
SHROOM4Q9ULL8 GMCL1P2-201ENST00000605230 823 ntBASIC9.46□□□□□ -0.9
SHROOM4Q9ULL8 AL356608.1-201ENST00000610034 820 ntBASIC9.46□□□□□ -0.9
SHROOM4Q9ULL8 AL157762.1-201ENST00000619612 415 ntBASIC9.46□□□□□ -0.9
SHROOM4Q9ULL8 RABGAP1L-208ENST00000392064 6282 ntTSL 1 (best) BASIC9.46□□□□□ -0.9
SHROOM4Q9ULL8 ELAVL2-202ENST00000380110 3691 ntTSL 5 BASIC9.46□□□□□ -0.9
SHROOM4Q9ULL8 CLVS1-205ENST00000519846 3622 ntAPPRIS P1 TSL 5 BASIC9.46□□□□□ -0.9
Retrieved 100 of 98,524 protein–RNA pairs in 83.5 ms