Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 LINC02352-202ENST00000559292 1450 ntTSL 5 BASIC5.98□□□□□ -1.45
CCDC88AQ3V6T2 RNU1-64P-201ENST00000365443 163 ntBASIC5.98□□□□□ -1.45
CCDC88AQ3V6T2 SNORA5.1-201ENST00000384275 131 ntBASIC5.98□□□□□ -1.45
CCDC88AQ3V6T2 ST13P16-201ENST00000401760 781 ntBASIC5.98□□□□□ -1.45
CCDC88AQ3V6T2 AC009506.2-201ENST00000420635 840 ntBASIC5.98□□□□□ -1.45
CCDC88AQ3V6T2 RAD23BP1-201ENST00000421404 1227 ntBASIC5.98□□□□□ -1.45
CCDC88AQ3V6T2 RPS5P7-201ENST00000456664 608 ntBASIC5.98□□□□□ -1.45
CCDC88AQ3V6T2 AC025164.1-201ENST00000496249 478 ntBASIC5.98□□□□□ -1.45
CCDC88AQ3V6T2 AC093801.1-201ENST00000504017 307 ntTSL 2 BASIC5.98□□□□□ -1.45
CCDC88AQ3V6T2 AC132219.1-201ENST00000524337 478 ntTSL 5 BASIC5.98□□□□□ -1.45
CCDC88AQ3V6T2 LINC01486-201ENST00000538041 716 ntTSL 2 BASIC5.98□□□□□ -1.45
CCDC88AQ3V6T2 MIR5699-201ENST00000578903 90 ntBASIC5.98□□□□□ -1.45
CCDC88AQ3V6T2 AC023575.1-201ENST00000580510 358 ntBASIC5.98□□□□□ -1.45
CCDC88AQ3V6T2 AC115286.1-201ENST00000604298 434 ntBASIC5.98□□□□□ -1.45
CCDC88AQ3V6T2 LRRN3-204ENST00000451085 3725 ntAPPRIS P1 TSL 2 BASIC5.98□□□□□ -1.45
CCDC88AQ3V6T2 THOC2-220ENST00000618150 3211 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC88AQ3V6T2 PIGN-217ENST00000591238 1622 ntTSL 5 BASIC5.98□□□□□ -1.45
CCDC88AQ3V6T2 PCDH15-215ENST00000409834 5401 ntTSL 5 BASIC5.98□□□□□ -1.45
CCDC88AQ3V6T2 PIGK-202ENST00000370812 4596 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC88AQ3V6T2 AP000473.2-201ENST00000602659 1537 ntBASIC5.98□□□□□ -1.45
CCDC88AQ3V6T2 ENPP2-208ENST00000522826 2667 ntAPPRIS ALT1 TSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC88AQ3V6T2 ENPP2-201ENST00000075322 2651 ntAPPRIS ALT1 TSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC88AQ3V6T2 AC092376.2-201ENST00000622621 4116 ntBASIC5.97□□□□□ -1.45
CCDC88AQ3V6T2 FOXP2-204ENST00000390668 1472 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC88AQ3V6T2 KIF16B-202ENST00000355755 606 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC88AQ3V6T2 RNU4-39P-201ENST00000362455 127 ntBASIC5.97□□□□□ -1.45
CCDC88AQ3V6T2 RNU1-82P-201ENST00000390851 165 ntBASIC5.97□□□□□ -1.45
CCDC88AQ3V6T2 MIR298-201ENST00000401212 88 ntBASIC5.97□□□□□ -1.45
CCDC88AQ3V6T2 AL672277.1-201ENST00000420865 588 ntTSL 2 BASIC5.97□□□□□ -1.45
CCDC88AQ3V6T2 AL451070.1-201ENST00000430143 439 ntTSL 5 BASIC5.97□□□□□ -1.45
CCDC88AQ3V6T2 LINC01826-201ENST00000432894 584 ntTSL 4 BASIC5.97□□□□□ -1.45
CCDC88AQ3V6T2 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC5.97□□□□□ -1.45
CCDC88AQ3V6T2 RPS3AP54-201ENST00000435535 734 ntBASIC5.97□□□□□ -1.45
CCDC88AQ3V6T2 AC003991.1-205ENST00000447758 625 ntTSL 5 BASIC5.97□□□□□ -1.45
CCDC88AQ3V6T2 LINC01014-203ENST00000455307 548 ntTSL 2 BASIC5.97□□□□□ -1.45
CCDC88AQ3V6T2 RPL7AP52-201ENST00000458096 790 ntBASIC5.97□□□□□ -1.45
CCDC88AQ3V6T2 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC5.97□□□□□ -1.45
CCDC88AQ3V6T2 AC139722.1-201ENST00000512502 782 ntTSL 3 BASIC5.97□□□□□ -1.45
CCDC88AQ3V6T2 RBPMS-207ENST00000519647 780 ntTSL 5 BASIC5.97□□□□□ -1.45
CCDC88AQ3V6T2 AC134980.1-203ENST00000640541 570 ntTSL 4 BASIC5.97□□□□□ -1.45
CCDC88AQ3V6T2 OR8B1P-202ENST00000641132 1178 ntBASIC5.97□□□□□ -1.45
CCDC88AQ3V6T2 LINC01981-201ENST00000432163 2833 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC88AQ3V6T2 POMP-202ENST00000460403 1428 ntTSL 3 BASIC5.97□□□□□ -1.45
CCDC88AQ3V6T2 ESRRG-204ENST00000361525 5363 ntAPPRIS P1 TSL 5 BASIC5.97□□□□□ -1.45
CCDC88AQ3V6T2 NRG1-220ENST00000539990 2401 ntTSL 2 BASIC5.97□□□□□ -1.45
CCDC88AQ3V6T2 AJ009632.2-208ENST00000635525 4123 ntTSL 5 BASIC5.97□□□□□ -1.45
CCDC88AQ3V6T2 VEZF1-204ENST00000584396 2342 ntAPPRIS ALT2 TSL 5 BASIC5.97□□□□□ -1.45
CCDC88AQ3V6T2 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC88AQ3V6T2 MYB-226ENST00000528774 2277 ntAPPRIS ALT1 TSL 1 (best) BASIC5.96□□□□□ -1.45
CCDC88AQ3V6T2 ASB14-202ENST00000487349 3179 ntAPPRIS P2 TSL 1 (best) BASIC5.96□□□□□ -1.45
CCDC88AQ3V6T2 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC5.96□□□□□ -1.45
CCDC88AQ3V6T2 FABP4-201ENST00000256104 941 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.45
CCDC88AQ3V6T2 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.45
CCDC88AQ3V6T2 SNORA70.4-201ENST00000365509 134 ntBASIC5.96□□□□□ -1.45
CCDC88AQ3V6T2 CCL7-203ENST00000394630 687 ntTSL 1 (best) BASIC5.96□□□□□ -1.45
CCDC88AQ3V6T2 AF186996.5-201ENST00000418098 904 ntBASIC5.96□□□□□ -1.45
CCDC88AQ3V6T2 AC009238.2-201ENST00000431026 355 ntBASIC5.96□□□□□ -1.45
CCDC88AQ3V6T2 FHP1-201ENST00000442741 703 ntBASIC5.96□□□□□ -1.45
CCDC88AQ3V6T2 Z95327.1-201ENST00000446082 482 ntBASIC5.96□□□□□ -1.45
CCDC88AQ3V6T2 AC079168.2-201ENST00000453977 416 ntBASIC5.96□□□□□ -1.45
CCDC88AQ3V6T2 CYCSP34-201ENST00000458172 304 ntBASIC5.96□□□□□ -1.45
CCDC88AQ3V6T2 OR52Z1-201ENST00000510471 897 ntAPPRIS P1 BASIC5.96□□□□□ -1.45
CCDC88AQ3V6T2 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC5.96□□□□□ -1.45
CCDC88AQ3V6T2 AC108359.1-201ENST00000616451 1211 ntBASIC5.96□□□□□ -1.45
CCDC88AQ3V6T2 AC006133.1-201ENST00000617106 264 ntBASIC5.96□□□□□ -1.45
CCDC88AQ3V6T2 LINC01951-201ENST00000377300 1925 ntTSL 2 BASIC5.96□□□□□ -1.45
CCDC88AQ3V6T2 ARHGAP20-206ENST00000533353 6066 ntAPPRIS ALT2 TSL 1 (best) BASIC5.96□□□□□ -1.45
CCDC88AQ3V6T2 GLYATL1-201ENST00000300079 2068 ntAPPRIS P3 TSL 2 BASIC5.96□□□□□ -1.45
CCDC88AQ3V6T2 MTERF1-201ENST00000351870 1997 ntAPPRIS P3 TSL 1 (best) BASIC5.96□□□□□ -1.46
CCDC88AQ3V6T2 ZNF532-201ENST00000336078 6696 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
CCDC88AQ3V6T2 NLRP11-202ENST00000589824 3231 ntAPPRIS ALT2 TSL 5 BASIC5.96□□□□□ -1.46
CCDC88AQ3V6T2 AC097063.1-201ENST00000426714 1797 ntBASIC5.96□□□□□ -1.46
CCDC88AQ3V6T2 OR52A5-201ENST00000307388 3973 ntAPPRIS P1 BASIC5.96□□□□□ -1.46
CCDC88AQ3V6T2 PCDH11X-202ENST00000361655 4126 ntAPPRIS ALT2 TSL 1 (best) BASIC5.96□□□□□ -1.46
CCDC88AQ3V6T2 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
CCDC88AQ3V6T2 AC109446.4-201ENST00000623235 2755 ntBASIC5.96□□□□□ -1.46
CCDC88AQ3V6T2 NBPF14-206ENST00000614999 10080 ntTSL 5 BASIC5.96□□□□□ -1.46
CCDC88AQ3V6T2 CHEK1-216ENST00000534070 3513 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
CCDC88AQ3V6T2 MIR133A2-201ENST00000347538 102 ntBASIC5.96□□□□□ -1.46
CCDC88AQ3V6T2 MIR208A-201ENST00000362287 71 ntBASIC5.96□□□□□ -1.46
CCDC88AQ3V6T2 AL445189.1-201ENST00000405722 338 ntBASIC5.96□□□□□ -1.46
CCDC88AQ3V6T2 AC013472.2-201ENST00000416226 306 ntTSL 3 BASIC5.96□□□□□ -1.46
CCDC88AQ3V6T2 AL645608.4-201ENST00000423619 154 ntBASIC5.96□□□□□ -1.46
CCDC88AQ3V6T2 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC5.96□□□□□ -1.46
CCDC88AQ3V6T2 CDV3-208ENST00000511392 554 ntTSL 5 BASIC5.96□□□□□ -1.46
CCDC88AQ3V6T2 NDUFB4P11-201ENST00000560510 395 ntBASIC5.96□□□□□ -1.46
CCDC88AQ3V6T2 AC103876.1-201ENST00000568634 418 ntTSL 3 BASIC5.96□□□□□ -1.46
CCDC88AQ3V6T2 AC002091.1-201ENST00000578788 557 ntTSL 2 BASIC5.96□□□□□ -1.46
CCDC88AQ3V6T2 AC092683.1-209ENST00000612970 1105 ntTSL 5 BASIC5.96□□□□□ -1.46
CCDC88AQ3V6T2 DSPP-202ENST00000399271 4331 ntAPPRIS P1 TSL 5 BASIC5.96□□□□□ -1.46
CCDC88AQ3V6T2 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
CCDC88AQ3V6T2 AP005432.1-201ENST00000580891 3485 ntBASIC5.96□□□□□ -1.46
CCDC88AQ3V6T2 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC5.95□□□□□ -1.46
CCDC88AQ3V6T2 ARPP21-202ENST00000396481 1304 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
CCDC88AQ3V6T2 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
CCDC88AQ3V6T2 SELENOI-205ENST00000613142 8126 ntAPPRIS ALT1 TSL 5 BASIC5.95□□□□□ -1.46
CCDC88AQ3V6T2 MEG8-223ENST00000638012 3757 ntTSL 5 BASIC5.95□□□□□ -1.46
CCDC88AQ3V6T2 SMG1P3-204ENST00000520823 3194 ntTSL 5 BASIC5.95□□□□□ -1.46
CCDC88AQ3V6T2 HSD17B11-201ENST00000358290 1885 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
CCDC88AQ3V6T2 MRC1-201ENST00000569591 5198 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 112.4 ms