Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AL359073.1-201ENST00000448036 403 ntBASIC7.92□□□□□ -1.14
CUX1P39880 RNA5SP315-201ENST00000516340 116 ntBASIC7.92□□□□□ -1.14
CUX1P39880 RNA5SP312-201ENST00000517068 116 ntBASIC7.92□□□□□ -1.14
CUX1P39880 HNRNPRP2-201ENST00000528421 743 ntBASIC7.92□□□□□ -1.14
CUX1P39880 SNORA74C-1-201ENST00000580726 201 ntBASIC7.92□□□□□ -1.14
CUX1P39880 UBE2NL-201ENST00000618570 1185 ntAPPRIS P1 BASIC7.92□□□□□ -1.14
CUX1P39880 AP001267.1-201ENST00000531742 2074 ntTSL 2 BASIC7.92□□□□□ -1.14
CUX1P39880 DNAH2-201ENST00000389173 13505 ntAPPRIS P1 TSL 2 BASIC7.91□□□□□ -1.14
CUX1P39880 ZBTB38-201ENST00000321464 3588 ntAPPRIS P1 BASIC7.91□□□□□ -1.14
CUX1P39880 MYO3B-202ENST00000408978 5529 ntAPPRIS P3 TSL 1 (best) BASIC7.91□□□□□ -1.14
CUX1P39880 LIMA1-212ENST00000552491 2652 ntAPPRIS ALT2 TSL 2 BASIC7.91□□□□□ -1.14
CUX1P39880 ZNF24-201ENST00000261332 6307 ntAPPRIS P1 TSL 1 (best) BASIC7.91□□□□□ -1.14
CUX1P39880 AC017079.1-201ENST00000333650 415 ntBASIC7.91□□□□□ -1.14
CUX1P39880 DNASE2B-202ENST00000370665 1269 ntAPPRIS P1 TSL 1 (best) BASIC7.91□□□□□ -1.14
CUX1P39880 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC7.91□□□□□ -1.14
CUX1P39880 AC090204.1-202ENST00000500843 737 ntTSL 5 BASIC7.91□□□□□ -1.14
CUX1P39880 IGKV3OR22-2-201ENST00000517943 313 ntBASIC7.91□□□□□ -1.14
CUX1P39880 SLC4A8-202ENST00000358657 11731 ntAPPRIS ALT2 TSL 1 (best) BASIC7.91□□□□□ -1.14
CUX1P39880 AC064875.1-201ENST00000425974 1942 ntTSL 2 BASIC7.91□□□□□ -1.14
CUX1P39880 SAMM50P1-201ENST00000455403 1399 ntBASIC7.91□□□□□ -1.14
CUX1P39880 VN2R3P-201ENST00000422626 1412 ntBASIC7.91□□□□□ -1.14
CUX1P39880 AC089984.1-201ENST00000552780 1431 ntTSL 3 BASIC7.91□□□□□ -1.14
CUX1P39880 DICER1-212ENST00000541352 5621 ntTSL 1 (best) BASIC7.91□□□□□ -1.14
CUX1P39880 IQGAP2-203ENST00000396234 3376 ntTSL 1 (best) BASIC7.91□□□□□ -1.14
CUX1P39880 ZNF813-201ENST00000396403 6151 ntAPPRIS P1 TSL 3 BASIC7.9□□□□□ -1.14
CUX1P39880 PHC3-217ENST00000497658 2087 ntTSL 1 (best) BASIC7.9□□□□□ -1.14
CUX1P39880 TMSB10P2-201ENST00000416049 131 ntBASIC7.9□□□□□ -1.14
CUX1P39880 AC003092.1-202ENST00000438538 743 ntTSL 3 BASIC7.9□□□□□ -1.14
CUX1P39880 STK26-205ENST00000496850 1186 ntTSL 1 (best) BASIC7.9□□□□□ -1.14
CUX1P39880 SLC25A15P5-201ENST00000508033 253 ntBASIC7.9□□□□□ -1.14
CUX1P39880 LINC02402-201ENST00000550337 1212 ntTSL 1 (best) BASIC7.9□□□□□ -1.14
CUX1P39880 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC7.9□□□□□ -1.14
CUX1P39880 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC7.9□□□□□ -1.14
CUX1P39880 AL133243.1-201ENST00000614487 366 ntBASIC7.9□□□□□ -1.14
CUX1P39880 ZYXP1-201ENST00000617638 118 ntBASIC7.9□□□□□ -1.14
CUX1P39880 PARP15-206ENST00000493645 1311 ntTSL 1 (best) BASIC7.9□□□□□ -1.14
CUX1P39880 AC135352.1-201ENST00000506173 1418 ntBASIC7.9□□□□□ -1.14
CUX1P39880 VIP-202ENST00000367244 1584 ntAPPRIS P4 TSL 1 (best) BASIC7.9□□□□□ -1.15
CUX1P39880 ANK3-216ENST00000503366 5792 ntAPPRIS ALT2 TSL 2 BASIC7.9□□□□□ -1.15
CUX1P39880 AC106895.2-201ENST00000511291 1824 ntTSL 3 BASIC7.9□□□□□ -1.15
CUX1P39880 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC7.9□□□□□ -1.15
CUX1P39880 BTLA-201ENST00000334529 3213 ntAPPRIS P3 TSL 1 (best) BASIC7.9□□□□□ -1.15
CUX1P39880 PTER-201ENST00000298942 3448 ntTSL 5 BASIC7.9□□□□□ -1.15
CUX1P39880 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC7.89□□□□□ -1.15
CUX1P39880 AL389915.1-201ENST00000422463 466 ntBASIC7.89□□□□□ -1.15
CUX1P39880 AC041039.1-201ENST00000485656 536 ntBASIC7.89□□□□□ -1.15
CUX1P39880 AL162872.1-201ENST00000557709 448 ntTSL 3 BASIC7.89□□□□□ -1.15
CUX1P39880 AC134312.3-201ENST00000566155 213 ntTSL 2 BASIC7.89□□□□□ -1.15
CUX1P39880 MIR4420-201ENST00000583944 77 ntBASIC7.89□□□□□ -1.15
CUX1P39880 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC7.89□□□□□ -1.15
CUX1P39880 AC104461.1-201ENST00000637430 817 ntTSL 5 BASIC7.89□□□□□ -1.15
CUX1P39880 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC7.89□□□□□ -1.15
CUX1P39880 OSER1-202ENST00000372970 1616 ntAPPRIS P1 TSL 3 BASIC7.89□□□□□ -1.15
CUX1P39880 ZNF521-201ENST00000361524 4871 ntAPPRIS P1 TSL 1 (best) BASIC7.89□□□□□ -1.15
CUX1P39880 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC7.89□□□□□ -1.15
CUX1P39880 MLH3-201ENST00000355774 7896 ntAPPRIS P1 TSL 5 BASIC7.89□□□□□ -1.15
CUX1P39880 STXBP4-202ENST00000398391 2160 ntTSL 1 (best) BASIC7.89□□□□□ -1.15
CUX1P39880 AL591135.1-201ENST00000401578 5914 ntBASIC7.89□□□□□ -1.15
CUX1P39880 CYP2C8-210ENST00000535898 1799 ntTSL 2 BASIC7.89□□□□□ -1.15
CUX1P39880 ANLN-202ENST00000396068 4661 ntTSL 1 (best) BASIC7.88□□□□□ -1.15
CUX1P39880 DOCK9-203ENST00000376460 7549 ntAPPRIS P2 TSL 5 BASIC7.88□□□□□ -1.15
CUX1P39880 SNORA70C-201ENST00000384538 135 ntBASIC7.88□□□□□ -1.15
CUX1P39880 AL590762.2-201ENST00000395798 571 ntBASIC7.88□□□□□ -1.15
CUX1P39880 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC7.88□□□□□ -1.15
CUX1P39880 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC7.88□□□□□ -1.15
CUX1P39880 AC106806.2-201ENST00000509365 500 ntBASIC7.88□□□□□ -1.15
CUX1P39880 Y_RNA.719-201ENST00000517156 106 ntBASIC7.88□□□□□ -1.15
CUX1P39880 AP002518.2-201ENST00000544925 393 ntTSL 5 BASIC7.88□□□□□ -1.15
CUX1P39880 LINC02281-201ENST00000549013 375 ntTSL 3 BASIC7.88□□□□□ -1.15
CUX1P39880 AC124784.1-201ENST00000552426 571 ntTSL 3 BASIC7.88□□□□□ -1.15
CUX1P39880 AGGF1P9-201ENST00000561884 913 ntBASIC7.88□□□□□ -1.15
CUX1P39880 AC011477.5-201ENST00000586571 259 ntBASIC7.88□□□□□ -1.15
CUX1P39880 SNX18P1Y-201ENST00000616231 511 ntBASIC7.88□□□□□ -1.15
CUX1P39880 PDCD6IPP1-202ENST00000622242 1064 ntBASIC7.88□□□□□ -1.15
CUX1P39880 RNA5SP196-201ENST00000625967 102 ntBASIC7.88□□□□□ -1.15
CUX1P39880 LRRN3-204ENST00000451085 3725 ntAPPRIS P1 TSL 2 BASIC7.88□□□□□ -1.15
CUX1P39880 FSTL5-201ENST00000306100 4831 ntAPPRIS P3 TSL 1 (best) BASIC7.88□□□□□ -1.15
CUX1P39880 ZSCAN4-201ENST00000318203 2246 ntAPPRIS P1 TSL 2 BASIC7.88□□□□□ -1.15
CUX1P39880 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC7.88□□□□□ -1.15
CUX1P39880 ATP1B4-202ENST00000361319 3856 ntAPPRIS P3 TSL 1 (best) BASIC7.88□□□□□ -1.15
CUX1P39880 USP50-205ENST00000616326 1419 ntAPPRIS ALT2 TSL 5 BASIC7.88□□□□□ -1.15
CUX1P39880 ZNF528-203ENST00000391788 4209 ntTSL 2 BASIC7.88□□□□□ -1.15
CUX1P39880 KIAA1328-201ENST00000280020 4853 ntAPPRIS P1 TSL 1 (best) BASIC7.88□□□□□ -1.15
CUX1P39880 OR7A10-201ENST00000248058 930 ntAPPRIS P1 BASIC7.88□□□□□ -1.15
CUX1P39880 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC7.88□□□□□ -1.15
CUX1P39880 RNU1-130P-201ENST00000363930 160 ntBASIC7.88□□□□□ -1.15
CUX1P39880 ATP5F1P2-201ENST00000398143 760 ntBASIC7.88□□□□□ -1.15
CUX1P39880 ACTR3P2-201ENST00000439585 1257 ntBASIC7.88□□□□□ -1.15
CUX1P39880 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC7.88□□□□□ -1.15
CUX1P39880 AC044797.1-201ENST00000445744 679 ntBASIC7.88□□□□□ -1.15
CUX1P39880 AC104763.1-201ENST00000475274 360 ntBASIC7.88□□□□□ -1.15
CUX1P39880 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC7.88□□□□□ -1.15
CUX1P39880 AC073137.1-201ENST00000605636 634 ntBASIC7.88□□□□□ -1.15
CUX1P39880 AL136084.2-203ENST00000630758 690 ntTSL 5 BASIC7.88□□□□□ -1.15
CUX1P39880 KCNJ15-201ENST00000328656 8399 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
CUX1P39880 SPRY3-201ENST00000302805 9019 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
CUX1P39880 AC018557.1-201ENST00000569274 1790 ntTSL 5 BASIC7.87□□□□□ -1.15
CUX1P39880 CACNB4-245ENST00000637284 2423 ntTSL 5 BASIC7.87□□□□□ -1.15
CUX1P39880 OR4E1-202ENST00000641792 3742 ntAPPRIS P5 BASIC7.87□□□□□ -1.15
CUX1P39880 ZFP14-201ENST00000270001 7489 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
Retrieved 100 of 98,524 protein–RNA pairs in 72.4 ms