Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 NAALADL2-AS2-201ENST00000424690 1038 ntTSL 5 BASIC6.46□□□□□ -1.38
COL3A1P02461 RSL24D1P8-201ENST00000434442 492 ntBASIC6.46□□□□□ -1.38
COL3A1P02461 AC005154.2-201ENST00000438110 379 ntBASIC6.46□□□□□ -1.38
COL3A1P02461 AL356475.1-201ENST00000440321 341 ntTSL 5 BASIC6.46□□□□□ -1.38
COL3A1P02461 AC073648.4-201ENST00000442655 781 ntBASIC6.46□□□□□ -1.38
COL3A1P02461 PCBP1-AS1-237ENST00000452431 1194 ntTSL 4 BASIC6.46□□□□□ -1.38
COL3A1P02461 AC011005.3-201ENST00000491624 395 ntBASIC6.46□□□□□ -1.38
COL3A1P02461 AC098862.1-201ENST00000504991 413 ntBASIC6.46□□□□□ -1.38
COL3A1P02461 LINC02236-201ENST00000508881 552 ntTSL 4 BASIC6.46□□□□□ -1.38
COL3A1P02461 AC016550.3-201ENST00000515706 767 ntBASIC6.46□□□□□ -1.38
COL3A1P02461 RNU2-30P-201ENST00000516209 141 ntBASIC6.46□□□□□ -1.38
COL3A1P02461 IGKV1-32-201ENST00000519290 311 ntBASIC6.46□□□□□ -1.38
COL3A1P02461 BUD31P1-201ENST00000521828 359 ntBASIC6.46□□□□□ -1.38
COL3A1P02461 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC6.46□□□□□ -1.38
COL3A1P02461 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC6.46□□□□□ -1.38
COL3A1P02461 DPPA3P2-201ENST00000553589 478 ntBASIC6.46□□□□□ -1.38
COL3A1P02461 AC104072.1-201ENST00000568817 668 ntBASIC6.46□□□□□ -1.38
COL3A1P02461 BNIP3P27-201ENST00000599991 412 ntBASIC6.46□□□□□ -1.38
COL3A1P02461 AL158050.2-201ENST00000605336 568 ntBASIC6.46□□□□□ -1.38
COL3A1P02461 MIR6780A-201ENST00000615089 68 ntBASIC6.46□□□□□ -1.38
COL3A1P02461 AP000550.3-201ENST00000637734 379 ntBASIC6.46□□□□□ -1.38
COL3A1P02461 MAP3K7-201ENST00000369320 3328 ntTSL 5 BASIC6.46□□□□□ -1.38
COL3A1P02461 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
COL3A1P02461 JAKMIP2-205ENST00000507386 5915 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
COL3A1P02461 ZNF571-201ENST00000328550 4113 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
COL3A1P02461 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
COL3A1P02461 OR56A4-202ENST00000641156 3768 ntAPPRIS P1 BASIC6.45□□□□□ -1.38
COL3A1P02461 AQP4-201ENST00000383168 5274 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
COL3A1P02461 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
COL3A1P02461 MARCH6-201ENST00000274140 9569 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
COL3A1P02461 ELAVL2-202ENST00000380110 3691 ntTSL 5 BASIC6.45□□□□□ -1.38
COL3A1P02461 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC6.45□□□□□ -1.38
COL3A1P02461 TLK1P1-201ENST00000456760 2440 ntBASIC6.45□□□□□ -1.38
COL3A1P02461 NR3C2-202ENST00000344721 5712 ntAPPRIS P1 TSL 5 BASIC6.45□□□□□ -1.38
COL3A1P02461 AL590240.1-201ENST00000334118 313 ntBASIC6.45□□□□□ -1.38
COL3A1P02461 DEC1-201ENST00000374016 1251 ntAPPRIS P2 TSL 1 (best) BASIC6.45□□□□□ -1.38
COL3A1P02461 IGLV5-48-201ENST00000390293 369 ntAPPRIS P1 BASIC6.45□□□□□ -1.38
COL3A1P02461 RNU6-1176P-201ENST00000390955 107 ntBASIC6.45□□□□□ -1.38
COL3A1P02461 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC6.45□□□□□ -1.38
COL3A1P02461 METTL5-205ENST00000409837 936 ntAPPRIS ALT1 TSL 1 (best) BASIC6.45□□□□□ -1.38
COL3A1P02461 AL669831.5-220ENST00000412115 581 ntTSL 3 BASIC6.45□□□□□ -1.38
COL3A1P02461 NRBF2P3-201ENST00000432731 865 ntBASIC6.45□□□□□ -1.38
COL3A1P02461 SETP4-201ENST00000455717 868 ntBASIC6.45□□□□□ -1.38
COL3A1P02461 AC108729.1-201ENST00000487812 947 ntBASIC6.45□□□□□ -1.38
COL3A1P02461 AC007686.1-201ENST00000488511 463 ntBASIC6.45□□□□□ -1.38
COL3A1P02461 AC073073.1-201ENST00000493920 463 ntBASIC6.45□□□□□ -1.38
COL3A1P02461 AC104971.1-201ENST00000495117 578 ntBASIC6.45□□□□□ -1.38
COL3A1P02461 AC096734.1-201ENST00000511279 1128 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
COL3A1P02461 AC010451.2-201ENST00000511514 545 ntTSL 4 BASIC6.45□□□□□ -1.38
COL3A1P02461 HDAC2-AS2-207ENST00000518470 563 ntTSL 4 BASIC6.45□□□□□ -1.38
COL3A1P02461 AC093249.4-201ENST00000564755 259 ntBASIC6.45□□□□□ -1.38
COL3A1P02461 MIR4330-201ENST00000579077 105 ntBASIC6.45□□□□□ -1.38
COL3A1P02461 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC6.45□□□□□ -1.38
COL3A1P02461 LINC01862-201ENST00000593792 478 ntTSL 2 BASIC6.45□□□□□ -1.38
COL3A1P02461 DARS-AS1-211ENST00000595061 720 ntTSL 5 BASIC6.45□□□□□ -1.38
COL3A1P02461 AC234771.5-201ENST00000600161 514 ntBASIC6.45□□□□□ -1.38
COL3A1P02461 AC015914.2-201ENST00000618167 288 ntBASIC6.45□□□□□ -1.38
COL3A1P02461 OR10X1-201ENST00000623167 981 ntAPPRIS P1 BASIC6.45□□□□□ -1.38
COL3A1P02461 RBMS1-202ENST00000392753 3781 ntTSL 5 BASIC6.45□□□□□ -1.38
COL3A1P02461 CEP290-207ENST00000552810 7948 ntAPPRIS P2 TSL 1 (best) BASIC6.45□□□□□ -1.38
COL3A1P02461 SULF1-201ENST00000260128 5710 ntAPPRIS P1 TSL 5 BASIC6.45□□□□□ -1.38
COL3A1P02461 CPA3-201ENST00000296046 1795 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
COL3A1P02461 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
COL3A1P02461 STAG2-201ENST00000218089 5218 ntAPPRIS ALT1 TSL 1 (best) BASIC6.44□□□□□ -1.38
COL3A1P02461 FRYL-202ENST00000358350 11706 ntAPPRIS P1 TSL 5 BASIC6.44□□□□□ -1.38
COL3A1P02461 STK31-201ENST00000354639 3596 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
COL3A1P02461 TECRL-201ENST00000381210 3573 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
COL3A1P02461 AL442639.1-201ENST00000625030 1899 ntBASIC6.44□□□□□ -1.38
COL3A1P02461 AC004158.1-201ENST00000564508 4319 ntBASIC6.44□□□□□ -1.38
COL3A1P02461 PUM2-202ENST00000338086 6112 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
COL3A1P02461 GLIPR1L1-201ENST00000312442 1132 ntAPPRIS P3 TSL 1 (best) BASIC6.44□□□□□ -1.38
COL3A1P02461 CXCL8-202ENST00000401931 700 ntAPPRIS ALT1 TSL 1 (best) BASIC6.44□□□□□ -1.38
COL3A1P02461 U3.35-201ENST00000408405 208 ntBASIC6.44□□□□□ -1.38
COL3A1P02461 AC007738.1-201ENST00000413892 348 ntBASIC6.44□□□□□ -1.38
COL3A1P02461 LINC01593-201ENST00000424355 388 ntTSL 5 BASIC6.44□□□□□ -1.38
COL3A1P02461 RPL35AP21-201ENST00000437667 333 ntBASIC6.44□□□□□ -1.38
COL3A1P02461 CYCSP24-201ENST00000445119 316 ntBASIC6.44□□□□□ -1.38
COL3A1P02461 CASP12-208ENST00000448103 1071 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
COL3A1P02461 RPS29P33-201ENST00000456717 146 ntBASIC6.44□□□□□ -1.38
COL3A1P02461 AC096741.1-201ENST00000472250 846 ntBASIC6.44□□□□□ -1.38
COL3A1P02461 RPL12P20-201ENST00000475538 479 ntBASIC6.44□□□□□ -1.38
COL3A1P02461 CASP12-210ENST00000494737 961 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
COL3A1P02461 SOX5P1-201ENST00000524155 1127 ntBASIC6.44□□□□□ -1.38
COL3A1P02461 AC007298.1-201ENST00000547346 656 ntTSL 3 BASIC6.44□□□□□ -1.38
COL3A1P02461 GSTP1P1-201ENST00000548078 319 ntBASIC6.44□□□□□ -1.38
COL3A1P02461 AC130650.1-201ENST00000570581 415 ntTSL 2 BASIC6.44□□□□□ -1.38
COL3A1P02461 LINC02186-201ENST00000575767 885 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
COL3A1P02461 MIR4270-201ENST00000581799 70 ntBASIC6.44□□□□□ -1.38
COL3A1P02461 AC022726.1-201ENST00000587475 207 ntBASIC6.44□□□□□ -1.38
COL3A1P02461 MTRNR2L12-201ENST00000600213 1049 ntAPPRIS P1 BASIC6.44□□□□□ -1.38
COL3A1P02461 AL049840.6-202ENST00000603373 279 ntBASIC6.44□□□□□ -1.38
COL3A1P02461 DARS-AS1-225ENST00000615163 824 ntTSL 5 BASIC6.44□□□□□ -1.38
COL3A1P02461 AL022323.4-201ENST00000623980 13120 ntBASIC6.44□□□□□ -1.38
COL3A1P02461 LINC01524-201ENST00000428009 4390 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
COL3A1P02461 AC004690.2-201ENST00000472838 1754 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
COL3A1P02461 LINC02141-201ENST00000568279 6586 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
COL3A1P02461 SBNO1-201ENST00000267176 11121 ntAPPRIS P3 TSL 5 BASIC6.44□□□□□ -1.38
COL3A1P02461 CEP112-204ENST00000537949 2847 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
COL3A1P02461 RGS17-202ENST00000367225 7773 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
COL3A1P02461 OR2AT4-204ENST00000641593 8733 ntAPPRIS P1 BASIC6.44□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 120.8 ms