Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC006065.1-201ENST00000422539 802 ntBASIC4.63□□□□□ -1.67
NKX3-1Q99801 AL133173.1-201ENST00000423458 397 ntBASIC4.63□□□□□ -1.67
NKX3-1Q99801 AC010723.1-201ENST00000435111 540 ntTSL 3 BASIC4.63□□□□□ -1.67
NKX3-1Q99801 AC245427.2-201ENST00000438839 263 ntTSL 3 BASIC4.63□□□□□ -1.67
NKX3-1Q99801 AC019185.1-201ENST00000442718 389 ntBASIC4.63□□□□□ -1.67
NKX3-1Q99801 AL353898.1-201ENST00000444055 238 ntBASIC4.63□□□□□ -1.67
NKX3-1Q99801 PRPF38AP1-201ENST00000451976 933 ntBASIC4.63□□□□□ -1.67
NKX3-1Q99801 AL023584.2-201ENST00000454411 444 ntTSL 5 BASIC4.63□□□□□ -1.67
NKX3-1Q99801 LINC01436-201ENST00000457157 1048 ntTSL 2 BASIC4.63□□□□□ -1.67
NKX3-1Q99801 AC092754.1-201ENST00000472975 479 ntBASIC4.63□□□□□ -1.67
NKX3-1Q99801 RPL23AP73-201ENST00000492507 471 ntBASIC4.63□□□□□ -1.67
NKX3-1Q99801 AC104629.1-201ENST00000494226 508 ntBASIC4.63□□□□□ -1.67
NKX3-1Q99801 AC124242.1-202ENST00000499554 1052 ntTSL 3 BASIC4.63□□□□□ -1.67
NKX3-1Q99801 AC021146.7-201ENST00000509604 775 ntBASIC4.63□□□□□ -1.67
NKX3-1Q99801 AC106894.1-201ENST00000511735 451 ntTSL 5 BASIC4.63□□□□□ -1.67
NKX3-1Q99801 AC107391.1-201ENST00000514966 412 ntTSL 2 BASIC4.63□□□□□ -1.67
NKX3-1Q99801 SCARNA21.2-201ENST00000516600 166 ntBASIC4.63□□□□□ -1.67
NKX3-1Q99801 RNA5SP230-201ENST00000517039 122 ntBASIC4.63□□□□□ -1.67
NKX3-1Q99801 RBPMS-207ENST00000519647 780 ntTSL 5 BASIC4.63□□□□□ -1.67
NKX3-1Q99801 CASC19-203ENST00000523510 575 ntTSL 3 BASIC4.63□□□□□ -1.67
NKX3-1Q99801 AP003472.2-201ENST00000523554 639 ntTSL 3 BASIC4.63□□□□□ -1.67
NKX3-1Q99801 AP000859.1-201ENST00000525536 307 ntBASIC4.63□□□□□ -1.67
NKX3-1Q99801 AP006259.1-201ENST00000528520 561 ntTSL 2 BASIC4.63□□□□□ -1.67
NKX3-1Q99801 AC073862.1-201ENST00000537998 409 ntTSL 3 BASIC4.63□□□□□ -1.67
NKX3-1Q99801 ANKRD49-206ENST00000540349 573 ntTSL 4 BASIC4.63□□□□□ -1.67
NKX3-1Q99801 DCN-210ENST00000547568 823 ntTSL 3 BASIC4.63□□□□□ -1.67
NKX3-1Q99801 AC093014.1-201ENST00000548926 724 ntBASIC4.63□□□□□ -1.67
NKX3-1Q99801 NMNAT1P5-201ENST00000559657 841 ntBASIC4.63□□□□□ -1.67
NKX3-1Q99801 AC046158.2-201ENST00000568764 707 ntTSL 3 BASIC4.63□□□□□ -1.67
NKX3-1Q99801 AC122134.1-202ENST00000569111 1201 ntBASIC4.63□□□□□ -1.67
NKX3-1Q99801 PDE6G-203ENST00000571224 526 ntAPPRIS P1 TSL 5 BASIC4.63□□□□□ -1.67
NKX3-1Q99801 AC005670.2-201ENST00000571841 889 ntAPPRIS P1 TSL 5 BASIC4.63□□□□□ -1.67
NKX3-1Q99801 MTCYBP13-201ENST00000578634 1093 ntBASIC4.63□□□□□ -1.67
NKX3-1Q99801 AP000897.2-201ENST00000579509 1057 ntTSL 3 BASIC4.63□□□□□ -1.67
NKX3-1Q99801 AC015845.1-202ENST00000580184 242 ntTSL 3 BASIC4.63□□□□□ -1.67
NKX3-1Q99801 AC015911.5-201ENST00000587076 451 ntBASIC4.63□□□□□ -1.67
NKX3-1Q99801 XIST-210ENST00000602863 775 ntTSL 3 BASIC4.63□□□□□ -1.67
NKX3-1Q99801 TULP3P1-203ENST00000606237 586 ntTSL 4 BASIC4.63□□□□□ -1.67
NKX3-1Q99801 FAM72A-208ENST00000607379 1139 ntBASIC4.63□□□□□ -1.67
NKX3-1Q99801 AL118522.2-201ENST00000616045 615 ntBASIC4.63□□□□□ -1.67
NKX3-1Q99801 GXYLT1P5-202ENST00000618830 589 ntTSL 5 BASIC4.63□□□□□ -1.67
NKX3-1Q99801 AC097460.3-201ENST00000623099 442 ntBASIC4.63□□□□□ -1.67
NKX3-1Q99801 OSER1-AS1-205ENST00000623343 827 ntTSL 5 BASIC4.63□□□□□ -1.67
NKX3-1Q99801 C5orf42-201ENST00000425232 11199 ntAPPRIS P2 TSL 5 BASIC4.63□□□□□ -1.67
NKX3-1Q99801 THAP12P5-201ENST00000405864 2275 ntBASIC4.63□□□□□ -1.67
NKX3-1Q99801 YES1P1-201ENST00000418510 1628 ntBASIC4.63□□□□□ -1.67
NKX3-1Q99801 ENKUR-205ENST00000615958 3294 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
NKX3-1Q99801 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC4.63□□□□□ -1.67
NKX3-1Q99801 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
NKX3-1Q99801 DLGAP1-AS2-202ENST00000573177 1388 ntBASIC4.63□□□□□ -1.67
NKX3-1Q99801 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC4.63□□□□□ -1.67
NKX3-1Q99801 CLDND1-208ENST00000503004 2818 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
NKX3-1Q99801 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC4.63□□□□□ -1.67
NKX3-1Q99801 TRIQK-206ENST00000518748 3563 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
NKX3-1Q99801 CSNK1G3-210ENST00000521364 2580 ntAPPRIS ALT2 TSL 2 BASIC4.62□□□□□ -1.67
NKX3-1Q99801 LINC01520-201ENST00000441457 1487 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
NKX3-1Q99801 AC105411.1-201ENST00000568776 1470 ntTSL 4 BASIC4.62□□□□□ -1.67
NKX3-1Q99801 BCL2L14-213ENST00000589718 1850 ntAPPRIS P1 TSL 5 BASIC4.62□□□□□ -1.67
NKX3-1Q99801 EEF1A1-210ENST00000610520 3447 ntTSL 5 BASIC4.62□□□□□ -1.67
NKX3-1Q99801 AL592494.2-201ENST00000425455 1548 ntBASIC4.62□□□□□ -1.67
NKX3-1Q99801 MTCO1P15-201ENST00000529569 1526 ntBASIC4.62□□□□□ -1.67
NKX3-1Q99801 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC4.62□□□□□ -1.67
NKX3-1Q99801 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
NKX3-1Q99801 CRYZ-204ENST00000370872 1592 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
NKX3-1Q99801 AC019072.1-201ENST00000604535 1551 ntBASIC4.62□□□□□ -1.67
NKX3-1Q99801 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
NKX3-1Q99801 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC4.62□□□□□ -1.67
NKX3-1Q99801 CEP164P1-202ENST00000456938 2472 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
NKX3-1Q99801 CRYAB-201ENST00000227251 848 ntAPPRIS P1 TSL 5 BASIC4.62□□□□□ -1.67
NKX3-1Q99801 ELOC-201ENST00000284811 683 ntAPPRIS P1 TSL 3 BASIC4.62□□□□□ -1.67
NKX3-1Q99801 OR51Q1-201ENST00000300778 1096 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
NKX3-1Q99801 RNU6-650P-201ENST00000365658 111 ntBASIC4.62□□□□□ -1.67
NKX3-1Q99801 G6PC2-202ENST00000375363 1214 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
NKX3-1Q99801 AC005522.1-201ENST00000395416 346 ntBASIC4.62□□□□□ -1.67
NKX3-1Q99801 RN7SKP229-201ENST00000410465 302 ntBASIC4.62□□□□□ -1.67
NKX3-1Q99801 MOBP-203ENST00000415443 577 ntAPPRIS ALT2 TSL 4 BASIC4.62□□□□□ -1.67
NKX3-1Q99801 GPC5-AS2-201ENST00000417589 401 ntTSL 3 BASIC4.62□□□□□ -1.67
NKX3-1Q99801 DPP10-AS3-201ENST00000417844 665 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
NKX3-1Q99801 AL121882.1-201ENST00000422893 417 ntBASIC4.62□□□□□ -1.67
NKX3-1Q99801 AL360007.1-201ENST00000426166 349 ntTSL 3 BASIC4.62□□□□□ -1.67
NKX3-1Q99801 LINC01953-201ENST00000426870 717 ntTSL 5 BASIC4.62□□□□□ -1.67
NKX3-1Q99801 AC090018.1-201ENST00000434369 367 ntBASIC4.62□□□□□ -1.67
NKX3-1Q99801 FMO7P-201ENST00000436045 768 ntBASIC4.62□□□□□ -1.67
NKX3-1Q99801 AL136140.1-201ENST00000436113 473 ntTSL 3 BASIC4.62□□□□□ -1.67
NKX3-1Q99801 AP000365.1-201ENST00000438850 546 ntTSL 4 BASIC4.62□□□□□ -1.67
NKX3-1Q99801 AC005297.1-201ENST00000444765 862 ntBASIC4.62□□□□□ -1.67
NKX3-1Q99801 NOP56P2-201ENST00000447491 769 ntBASIC4.62□□□□□ -1.67
NKX3-1Q99801 AL450023.1-201ENST00000450868 751 ntBASIC4.62□□□□□ -1.67
NKX3-1Q99801 LRRC37A14P-201ENST00000452297 462 ntBASIC4.62□□□□□ -1.67
NKX3-1Q99801 AL035409.1-201ENST00000454305 497 ntTSL 2 BASIC4.62□□□□□ -1.67
NKX3-1Q99801 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC4.62□□□□□ -1.67
NKX3-1Q99801 AP000797.2-201ENST00000475768 606 ntBASIC4.62□□□□□ -1.67
NKX3-1Q99801 AC058823.1-201ENST00000485315 474 ntBASIC4.62□□□□□ -1.67
NKX3-1Q99801 AC092902.1-201ENST00000486999 259 ntBASIC4.62□□□□□ -1.67
NKX3-1Q99801 AL136038.1-201ENST00000497246 351 ntBASIC4.62□□□□□ -1.67
NKX3-1Q99801 AC004923.2-201ENST00000529649 369 ntBASIC4.62□□□□□ -1.67
NKX3-1Q99801 AP000753.2-201ENST00000540307 423 ntTSL 3 BASIC4.62□□□□□ -1.67
NKX3-1Q99801 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC4.62□□□□□ -1.67
NKX3-1Q99801 AC137590.1-201ENST00000542422 495 ntTSL 3 BASIC4.62□□□□□ -1.67
NKX3-1Q99801 LINC02316-201ENST00000553346 768 ntTSL 3 BASIC4.62□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 102 ms