Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC007599.2-201ENST00000573040 493 ntTSL 5 BASIC4.67□□□□□ -1.66
FOXA1P55317 MIR4489-201ENST00000578869 62 ntBASIC4.67□□□□□ -1.66
FOXA1P55317 MIR1269B-201ENST00000580405 75 ntBASIC4.67□□□□□ -1.66
FOXA1P55317 AC073254.1-207ENST00000600482 714 ntTSL 5 BASIC4.67□□□□□ -1.66
FOXA1P55317 PROX1-AS1-219ENST00000610094 791 ntTSL 5 BASIC4.67□□□□□ -1.66
FOXA1P55317 TADA2A-212ENST00000620367 1043 ntTSL 5 BASIC4.67□□□□□ -1.66
FOXA1P55317 BMPR1B-202ENST00000394931 1922 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
FOXA1P55317 DICER1-212ENST00000541352 5621 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
FOXA1P55317 NKIRAS1-209ENST00000614374 1612 ntAPPRIS P2 TSL 1 (best) BASIC4.67□□□□□ -1.66
FOXA1P55317 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
FOXA1P55317 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC4.67□□□□□ -1.66
FOXA1P55317 CKAP5-210ENST00000529230 7121 ntAPPRIS P1 TSL 5 BASIC4.67□□□□□ -1.66
FOXA1P55317 AP002518.1-201ENST00000534904 3837 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
FOXA1P55317 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC4.66□□□□□ -1.66
FOXA1P55317 GRIA2-202ENST00000296526 5621 ntAPPRIS P3 TSL 1 (best) BASIC4.66□□□□□ -1.66
FOXA1P55317 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC4.66□□□□□ -1.66
FOXA1P55317 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
FOXA1P55317 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC4.66□□□□□ -1.66
FOXA1P55317 AL445487.1-201ENST00000415694 1580 ntBASIC4.66□□□□□ -1.66
FOXA1P55317 ZNF733P-202ENST00000444809 1573 ntBASIC4.66□□□□□ -1.66
FOXA1P55317 OFD1P8Y-201ENST00000449148 1433 ntBASIC4.66□□□□□ -1.66
FOXA1P55317 B3GNT5-201ENST00000326505 4123 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
FOXA1P55317 CCDC169-204ENST00000379864 5944 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
FOXA1P55317 CKS1B-201ENST00000308987 759 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
FOXA1P55317 SNORA51.1-201ENST00000363243 140 ntBASIC4.66□□□□□ -1.66
FOXA1P55317 SVBP-202ENST00000372522 650 ntAPPRIS P1 TSL 3 BASIC4.66□□□□□ -1.66
FOXA1P55317 SNORA70-201ENST00000384436 135 ntBASIC4.66□□□□□ -1.66
FOXA1P55317 MIR223-201ENST00000385204 110 ntBASIC4.66□□□□□ -1.66
FOXA1P55317 RN7SKP273-201ENST00000411392 314 ntBASIC4.66□□□□□ -1.66
FOXA1P55317 GTF2IP5-201ENST00000414608 731 ntBASIC4.66□□□□□ -1.66
FOXA1P55317 RPL6P21-201ENST00000418672 846 ntBASIC4.66□□□□□ -1.66
FOXA1P55317 GNRH1-202ENST00000421054 470 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
FOXA1P55317 AL645608.4-201ENST00000423619 154 ntBASIC4.66□□□□□ -1.66
FOXA1P55317 FABP7P1-201ENST00000424004 391 ntBASIC4.66□□□□□ -1.66
FOXA1P55317 AC008073.2-201ENST00000428344 792 ntTSL 5 BASIC4.66□□□□□ -1.66
FOXA1P55317 AC093414.1-201ENST00000434712 514 ntBASIC4.66□□□□□ -1.66
FOXA1P55317 AL445644.1-201ENST00000436524 751 ntTSL 2 BASIC4.66□□□□□ -1.66
FOXA1P55317 MRPL48P1-201ENST00000445390 636 ntBASIC4.66□□□□□ -1.66
FOXA1P55317 OTX2P1-201ENST00000450956 354 ntBASIC4.66□□□□□ -1.66
FOXA1P55317 AC008953.1-201ENST00000497334 318 ntBASIC4.66□□□□□ -1.66
FOXA1P55317 AC119150.1-201ENST00000507143 563 ntTSL 2 BASIC4.66□□□□□ -1.66
FOXA1P55317 AC106872.4-201ENST00000510050 523 ntBASIC4.66□□□□□ -1.66
FOXA1P55317 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC4.66□□□□□ -1.66
FOXA1P55317 AC106894.1-201ENST00000511735 451 ntTSL 5 BASIC4.66□□□□□ -1.66
FOXA1P55317 RNA5SP464-201ENST00000516251 108 ntBASIC4.66□□□□□ -1.66
FOXA1P55317 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC4.66□□□□□ -1.66
FOXA1P55317 AC018793.4-201ENST00000524542 585 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
FOXA1P55317 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC4.66□□□□□ -1.66
FOXA1P55317 AC092490.3-201ENST00000545370 572 ntBASIC4.66□□□□□ -1.66
FOXA1P55317 AC084757.2-201ENST00000559165 540 ntTSL 2 BASIC4.66□□□□□ -1.66
FOXA1P55317 MIR3176-201ENST00000582210 90 ntBASIC4.66□□□□□ -1.66
FOXA1P55317 LINC02246-206ENST00000630211 712 ntTSL 5 BASIC4.66□□□□□ -1.66
FOXA1P55317 AC018793.1-201ENST00000638166 585 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
FOXA1P55317 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.66□□□□□ -1.66
FOXA1P55317 LEPROT-206ENST00000613538 4625 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
FOXA1P55317 AL359922.3-201ENST00000624779 1670 ntBASIC4.66□□□□□ -1.66
FOXA1P55317 PPP1R2P3-201ENST00000522232 1991 ntAPPRIS P1 BASIC4.65□□□□□ -1.66
FOXA1P55317 CLVS1-205ENST00000519846 3622 ntAPPRIS P1 TSL 5 BASIC4.65□□□□□ -1.66
FOXA1P55317 AC104260.2-201ENST00000623551 3497 ntBASIC4.65□□□□□ -1.66
FOXA1P55317 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC4.65□□□□□ -1.66
FOXA1P55317 SESN1-201ENST00000302071 2718 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
FOXA1P55317 SPART-201ENST00000355182 4820 ntAPPRIS P1 TSL 5 BASIC4.65□□□□□ -1.66
FOXA1P55317 COA1-201ENST00000223336 927 ntAPPRIS P3 TSL 2 BASIC4.65□□□□□ -1.67
FOXA1P55317 OR13G1-201ENST00000359688 1046 ntAPPRIS P1 BASIC4.65□□□□□ -1.67
FOXA1P55317 RAET1L-202ENST00000367341 1285 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
FOXA1P55317 SNORD96B-201ENST00000386148 79 ntBASIC4.65□□□□□ -1.67
FOXA1P55317 FAIM-204ENST00000393035 946 ntAPPRIS P3 TSL 1 (best) BASIC4.65□□□□□ -1.67
FOXA1P55317 SNORA11B-201ENST00000408175 129 ntBASIC4.65□□□□□ -1.67
FOXA1P55317 PPP3R1-203ENST00000409752 851 ntTSL 3 BASIC4.65□□□□□ -1.67
FOXA1P55317 LINC00364-201ENST00000415120 611 ntTSL 3 BASIC4.65□□□□□ -1.67
FOXA1P55317 LINC01047-201ENST00000415193 778 ntTSL 5 BASIC4.65□□□□□ -1.67
FOXA1P55317 VN1R37P-201ENST00000419096 748 ntBASIC4.65□□□□□ -1.67
FOXA1P55317 GNG5P5-201ENST00000420444 220 ntBASIC4.65□□□□□ -1.67
FOXA1P55317 RPL7P57-201ENST00000423238 740 ntBASIC4.65□□□□□ -1.67
FOXA1P55317 AC012519.1-201ENST00000424588 610 ntBASIC4.65□□□□□ -1.67
FOXA1P55317 RPS27P18-201ENST00000431701 247 ntBASIC4.65□□□□□ -1.67
FOXA1P55317 AL451139.1-201ENST00000434718 346 ntBASIC4.65□□□□□ -1.67
FOXA1P55317 RPL7P11-201ENST00000437586 658 ntBASIC4.65□□□□□ -1.67
FOXA1P55317 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
FOXA1P55317 AL031963.1-201ENST00000447644 695 ntTSL 3 BASIC4.65□□□□□ -1.67
FOXA1P55317 PLSCR5-202ENST00000482567 1018 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
FOXA1P55317 AC090142.2-201ENST00000483263 416 ntBASIC4.65□□□□□ -1.67
FOXA1P55317 RN7SL30P-201ENST00000488416 306 ntBASIC4.65□□□□□ -1.67
FOXA1P55317 AC139722.1-201ENST00000512502 782 ntTSL 3 BASIC4.65□□□□□ -1.67
FOXA1P55317 HAPLN1-206ENST00000514416 1145 ntTSL 5 BASIC4.65□□□□□ -1.67
FOXA1P55317 AL049629.1-201ENST00000534431 648 ntTSL 3 BASIC4.65□□□□□ -1.67
FOXA1P55317 AC090023.2-201ENST00000540875 545 ntTSL 3 BASIC4.65□□□□□ -1.67
FOXA1P55317 AC004825.1-201ENST00000555068 586 ntBASIC4.65□□□□□ -1.67
FOXA1P55317 AC104938.1-202ENST00000563041 630 ntTSL 3 BASIC4.65□□□□□ -1.67
FOXA1P55317 MIR3691-201ENST00000578066 90 ntBASIC4.65□□□□□ -1.67
FOXA1P55317 AC008794.2-201ENST00000587779 293 ntTSL 2 BASIC4.65□□□□□ -1.67
FOXA1P55317 AC004160.1-202ENST00000599917 578 ntTSL 5 BASIC4.65□□□□□ -1.67
FOXA1P55317 BX323046.1-201ENST00000610145 535 ntBASIC4.65□□□□□ -1.67
FOXA1P55317 ZNF75A-210ENST00000617839 1225 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
FOXA1P55317 MIR6886-201ENST00000619864 61 ntBASIC4.65□□□□□ -1.67
FOXA1P55317 AL353662.3-201ENST00000625131 237 ntBASIC4.65□□□□□ -1.67
FOXA1P55317 AC004808.2-201ENST00000627965 773 ntBASIC4.65□□□□□ -1.67
FOXA1P55317 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC4.65□□□□□ -1.67
FOXA1P55317 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC4.65□□□□□ -1.67
FOXA1P55317 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 105 ms