Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 SPRYD7P1-201ENST00000443861 570 ntBASIC5.56□□□□□ -1.52
PTPN9P43378 CBX1P2-201ENST00000453841 458 ntBASIC5.56□□□□□ -1.52
PTPN9P43378 AL133445.1-201ENST00000467051 452 ntBASIC5.56□□□□□ -1.52
PTPN9P43378 AC018635.1-201ENST00000468292 1030 ntBASIC5.56□□□□□ -1.52
PTPN9P43378 FAM104B-204ENST00000472571 1109 ntAPPRIS ALT2 TSL 1 (best) BASIC5.56□□□□□ -1.52
PTPN9P43378 RPL7P6-201ENST00000480903 738 ntBASIC5.56□□□□□ -1.52
PTPN9P43378 AC068756.1-201ENST00000482003 403 ntTSL 2 BASIC5.56□□□□□ -1.52
PTPN9P43378 AC022133.1-201ENST00000490961 571 ntBASIC5.56□□□□□ -1.52
PTPN9P43378 AC108693.1-201ENST00000496068 432 ntBASIC5.56□□□□□ -1.52
PTPN9P43378 AC098976.1-201ENST00000513014 541 ntBASIC5.56□□□□□ -1.52
PTPN9P43378 RN7SKP157-201ENST00000516174 282 ntBASIC5.56□□□□□ -1.52
PTPN9P43378 RNA5SP373-201ENST00000517271 95 ntBASIC5.56□□□□□ -1.52
PTPN9P43378 AC008575.1-201ENST00000520401 694 ntAPPRIS P1 TSL 3 BASIC5.56□□□□□ -1.52
PTPN9P43378 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC5.56□□□□□ -1.52
PTPN9P43378 AC027026.1-201ENST00000532323 742 ntBASIC5.56□□□□□ -1.52
PTPN9P43378 UBTFL9-201ENST00000534504 1148 ntBASIC5.56□□□□□ -1.52
PTPN9P43378 ETFRF1-208ENST00000556402 874 ntTSL 3 BASIC5.56□□□□□ -1.52
PTPN9P43378 CLMN-206ENST00000556441 452 ntTSL 5 BASIC5.56□□□□□ -1.52
PTPN9P43378 AF107885.2-202ENST00000557653 448 ntTSL 5 BASIC5.56□□□□□ -1.52
PTPN9P43378 AC009113.2-201ENST00000563182 403 ntTSL 3 BASIC5.56□□□□□ -1.52
PTPN9P43378 AC024267.4-201ENST00000580782 683 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
PTPN9P43378 AC011445.2-201ENST00000599274 173 ntBASIC5.56□□□□□ -1.52
PTPN9P43378 AC017076.1-201ENST00000607613 578 ntBASIC5.56□□□□□ -1.52
PTPN9P43378 AC079395.2-201ENST00000610982 737 ntBASIC5.56□□□□□ -1.52
PTPN9P43378 AC005840.5-201ENST00000619166 599 ntBASIC5.56□□□□□ -1.52
PTPN9P43378 HNF1A-AS1-205ENST00000619441 343 ntTSL 3 BASIC5.56□□□□□ -1.52
PTPN9P43378 AC090617.9-201ENST00000623751 147 ntBASIC5.56□□□□□ -1.52
PTPN9P43378 AC074101.1-201ENST00000637861 241 ntBASIC5.56□□□□□ -1.52
PTPN9P43378 AC073869.7-201ENST00000640874 297 ntBASIC5.56□□□□□ -1.52
PTPN9P43378 OR5AC4P-202ENST00000642086 985 ntBASIC5.56□□□□□ -1.52
PTPN9P43378 GJA9-201ENST00000357771 1799 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
PTPN9P43378 TCP1P3-201ENST00000414406 1498 ntBASIC5.56□□□□□ -1.52
PTPN9P43378 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
PTPN9P43378 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC5.56□□□□□ -1.52
PTPN9P43378 MGC32805-205ENST00000510972 1424 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
PTPN9P43378 MBNL1-203ENST00000324196 5225 ntTSL 5 BASIC5.55□□□□□ -1.52
PTPN9P43378 AL034549.2-201ENST00000618285 3373 ntBASIC5.55□□□□□ -1.52
PTPN9P43378 OR4F5-202ENST00000641515 2618 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
PTPN9P43378 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
PTPN9P43378 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC5.55□□□□□ -1.52
PTPN9P43378 ARPP19-208ENST00000566423 5362 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
PTPN9P43378 ZNF143-201ENST00000299606 2562 ntTSL 5 BASIC5.55□□□□□ -1.52
PTPN9P43378 SENP1-205ENST00000549595 1932 ntAPPRIS ALT1 TSL 5 BASIC5.55□□□□□ -1.52
PTPN9P43378 PCDH15-207ENST00000395430 7002 ntTSL 5 BASIC5.55□□□□□ -1.52
PTPN9P43378 OR52N4-201ENST00000317254 1037 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
PTPN9P43378 CENPW-203ENST00000368328 750 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
PTPN9P43378 OR1L6-202ENST00000373684 1044 ntBASIC5.55□□□□□ -1.52
PTPN9P43378 TRPM3-206ENST00000377097 554 ntTSL 2 BASIC5.55□□□□□ -1.52
PTPN9P43378 EI24P3-201ENST00000399046 1062 ntBASIC5.55□□□□□ -1.52
PTPN9P43378 HSPA8P15-201ENST00000401676 786 ntBASIC5.55□□□□□ -1.52
PTPN9P43378 AL359636.2-201ENST00000412262 259 ntTSL 3 BASIC5.55□□□□□ -1.52
PTPN9P43378 AC011754.1-201ENST00000415201 491 ntTSL 5 BASIC5.55□□□□□ -1.52
PTPN9P43378 LINC00308-201ENST00000419431 727 ntTSL 5 BASIC5.55□□□□□ -1.52
PTPN9P43378 LINC01889-201ENST00000430692 668 ntTSL 5 BASIC5.55□□□□□ -1.52
PTPN9P43378 CYCSP6-201ENST00000434498 302 ntBASIC5.55□□□□□ -1.52
PTPN9P43378 AFF2-IT1-201ENST00000435346 443 ntTSL 5 BASIC5.55□□□□□ -1.52
PTPN9P43378 AC013733.1-201ENST00000449835 985 ntTSL 4 BASIC5.55□□□□□ -1.52
PTPN9P43378 RPS26P41-201ENST00000450370 284 ntBASIC5.55□□□□□ -1.52
PTPN9P43378 GAPDHP14-201ENST00000450472 937 ntBASIC5.55□□□□□ -1.52
PTPN9P43378 AL592431.1-201ENST00000451090 317 ntTSL 3 BASIC5.55□□□□□ -1.52
PTPN9P43378 TRAPPC2-204ENST00000458511 678 ntTSL 5 BASIC5.55□□□□□ -1.52
PTPN9P43378 RN7SL205P-201ENST00000490174 284 ntBASIC5.55□□□□□ -1.52
PTPN9P43378 AC005823.2-201ENST00000505978 650 ntTSL 3 BASIC5.55□□□□□ -1.52
PTPN9P43378 AZIN1-AS1-203ENST00000517996 756 ntTSL 3 BASIC5.55□□□□□ -1.52
PTPN9P43378 AC092709.1-201ENST00000521355 1045 ntBASIC5.55□□□□□ -1.52
PTPN9P43378 AC009884.1-201ENST00000522670 545 ntTSL 4 BASIC5.55□□□□□ -1.52
PTPN9P43378 AC020661.4-201ENST00000561388 500 ntTSL 3 BASIC5.55□□□□□ -1.52
PTPN9P43378 RPL10P14-201ENST00000565265 298 ntBASIC5.55□□□□□ -1.52
PTPN9P43378 BCAR4-204ENST00000573319 1273 ntTSL 5 BASIC5.55□□□□□ -1.52
PTPN9P43378 PPIAL4F-202ENST00000581138 660 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
PTPN9P43378 PPIAL4E-201ENST00000581164 785 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
PTPN9P43378 BNIP3P40-201ENST00000596017 556 ntBASIC5.55□□□□□ -1.52
PTPN9P43378 AL050403.2-203ENST00000603180 558 ntTSL 4 BASIC5.55□□□□□ -1.52
PTPN9P43378 MTCO2P22-201ENST00000603246 681 ntBASIC5.55□□□□□ -1.52
PTPN9P43378 AL162431.4-201ENST00000604674 411 ntBASIC5.55□□□□□ -1.52
PTPN9P43378 AP001033.2-201ENST00000609701 1003 ntBASIC5.55□□□□□ -1.52
PTPN9P43378 MIR6839-201ENST00000620425 113 ntBASIC5.55□□□□□ -1.52
PTPN9P43378 AC079906.1-201ENST00000621214 815 ntTSL 3 BASIC5.55□□□□□ -1.52
PTPN9P43378 AC095038.2-201ENST00000621464 1070 ntBASIC5.55□□□□□ -1.52
PTPN9P43378 LINC01708-202ENST00000634316 859 ntTSL 5 BASIC5.55□□□□□ -1.52
PTPN9P43378 AL049767.1-202ENST00000637826 242 ntBASIC5.55□□□□□ -1.52
PTPN9P43378 PDE4D-229ENST00000638939 375 ntTSL 5 BASIC5.55□□□□□ -1.52
PTPN9P43378 MAPK10-328ENST00000641553 4009 ntBASIC5.55□□□□□ -1.52
PTPN9P43378 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
PTPN9P43378 KCNH7-205ENST00000621889 1893 ntTSL 5 BASIC5.55□□□□□ -1.52
PTPN9P43378 TMEM99-201ENST00000301665 2058 ntAPPRIS P2 TSL 2 BASIC5.55□□□□□ -1.52
PTPN9P43378 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC5.55□□□□□ -1.52
PTPN9P43378 CEP164P1-202ENST00000456938 2472 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
PTPN9P43378 AP001029.2-203ENST00000589795 4910 ntBASIC5.55□□□□□ -1.52
PTPN9P43378 STON1-201ENST00000404752 5511 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
PTPN9P43378 TCF7L2-206ENST00000355995 4073 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
PTPN9P43378 MGP-203ENST00000539261 1405 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
PTPN9P43378 OR55B1P-203ENST00000641518 2602 ntBASIC5.55□□□□□ -1.52
PTPN9P43378 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
PTPN9P43378 GPALPP1-201ENST00000357537 5368 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
PTPN9P43378 RXFP1-206ENST00000460056 2735 ntTSL 2 BASIC5.54□□□□□ -1.52
PTPN9P43378 ENKUR-205ENST00000615958 3294 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
PTPN9P43378 TMLHE-AS1-201ENST00000433624 1702 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
PTPN9P43378 EEF1A1-210ENST00000610520 3447 ntTSL 5 BASIC5.54□□□□□ -1.52
PTPN9P43378 ZNF24-202ENST00000399061 6282 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 131.5 ms