Protein–RNA interactions for Protein: Q9Y5X1

SNX9, Sorting nexin-9, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX9Q9Y5X1 OR5M14P-201ENST00000506803 618 ntBASIC5.62□□□□□ -1.51
SNX9Q9Y5X1 AC027308.1-201ENST00000517993 110 ntBASIC5.62□□□□□ -1.51
SNX9Q9Y5X1 AC022360.1-201ENST00000521058 340 ntBASIC5.62□□□□□ -1.51
SNX9Q9Y5X1 AC124067.3-201ENST00000522643 847 ntTSL 3 BASIC5.62□□□□□ -1.51
SNX9Q9Y5X1 AC022832.1-201ENST00000530718 645 ntBASIC5.62□□□□□ -1.51
SNX9Q9Y5X1 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC5.62□□□□□ -1.51
SNX9Q9Y5X1 AC027544.2-201ENST00000539313 630 ntTSL 5 BASIC5.62□□□□□ -1.51
SNX9Q9Y5X1 AC078880.1-201ENST00000546696 553 ntTSL 4 BASIC5.62□□□□□ -1.51
SNX9Q9Y5X1 RNASE9-204ENST00000553541 1136 ntAPPRIS P3 TSL 1 (best) BASIC5.62□□□□□ -1.51
SNX9Q9Y5X1 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC5.62□□□□□ -1.51
SNX9Q9Y5X1 RNASE9-208ENST00000556208 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC5.62□□□□□ -1.51
SNX9Q9Y5X1 RNASE9-210ENST00000557209 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC5.62□□□□□ -1.51
SNX9Q9Y5X1 MIR3691-201ENST00000578066 90 ntBASIC5.62□□□□□ -1.51
SNX9Q9Y5X1 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC5.62□□□□□ -1.51
SNX9Q9Y5X1 AC239809.3-206ENST00000596091 741 ntTSL 5 BASIC5.62□□□□□ -1.51
SNX9Q9Y5X1 AL139407.1-201ENST00000613826 1175 ntBASIC5.62□□□□□ -1.51
SNX9Q9Y5X1 AL512506.1-201ENST00000613918 449 ntBASIC5.62□□□□□ -1.51
SNX9Q9Y5X1 AL162233.1-201ENST00000620014 944 ntBASIC5.62□□□□□ -1.51
SNX9Q9Y5X1 AC018445.2-201ENST00000622987 260 ntBASIC5.62□□□□□ -1.51
SNX9Q9Y5X1 AL356490.1-201ENST00000623079 479 ntBASIC5.62□□□□□ -1.51
SNX9Q9Y5X1 AC093495.1-217ENST00000627385 428 ntTSL 5 BASIC5.62□□□□□ -1.51
SNX9Q9Y5X1 ASAH1-224ENST00000636269 685 ntTSL 3 BASIC5.62□□□□□ -1.51
SNX9Q9Y5X1 LMNTD1-201ENST00000282881 1718 ntAPPRIS P3 TSL 2 BASIC5.62□□□□□ -1.51
SNX9Q9Y5X1 SFT2D2-201ENST00000271375 11040 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
SNX9Q9Y5X1 TCF4-290ENST00000638154 7801 ntAPPRIS ALT1 TSL 5 BASIC5.62□□□□□ -1.51
SNX9Q9Y5X1 TEX41-210ENST00000451774 2098 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
SNX9Q9Y5X1 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC5.62□□□□□ -1.51
SNX9Q9Y5X1 CEP290-202ENST00000397838 2421 ntTSL 5 BASIC5.62□□□□□ -1.51
SNX9Q9Y5X1 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC5.62□□□□□ -1.51
SNX9Q9Y5X1 LINC01091-203ENST00000514823 5262 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
SNX9Q9Y5X1 RNMT-202ENST00000383314 6250 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
SNX9Q9Y5X1 AC026523.2-201ENST00000625039 7739 ntBASIC5.61□□□□□ -1.51
SNX9Q9Y5X1 PIGK-203ENST00000445065 4318 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
SNX9Q9Y5X1 BICRAL-201ENST00000314073 6530 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
SNX9Q9Y5X1 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
SNX9Q9Y5X1 ZC3H12B-201ENST00000338957 7256 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
SNX9Q9Y5X1 Y_RNA.62-201ENST00000362840 99 ntBASIC5.61□□□□□ -1.51
SNX9Q9Y5X1 U8.4-201ENST00000363626 134 ntBASIC5.61□□□□□ -1.51
SNX9Q9Y5X1 RNA5SP90-201ENST00000364801 99 ntBASIC5.61□□□□□ -1.51
SNX9Q9Y5X1 RN7SKP153-201ENST00000365026 316 ntBASIC5.61□□□□□ -1.51
SNX9Q9Y5X1 LINC01317-201ENST00000366209 779 ntTSL 5 BASIC5.61□□□□□ -1.51
SNX9Q9Y5X1 MIR7-1-201ENST00000384871 110 ntBASIC5.61□□□□□ -1.51
SNX9Q9Y5X1 MIR105-2-201ENST00000385083 81 ntBASIC5.61□□□□□ -1.51
SNX9Q9Y5X1 FOXP2-204ENST00000390668 1472 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
SNX9Q9Y5X1 OR8V1P-201ENST00000395193 873 ntBASIC5.61□□□□□ -1.51
SNX9Q9Y5X1 PRR21-201ENST00000408934 1170 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
SNX9Q9Y5X1 G6PC2-203ENST00000421979 494 ntTSL 3 BASIC5.61□□□□□ -1.51
SNX9Q9Y5X1 MAGI2-AS3-204ENST00000426835 738 ntTSL 3 BASIC5.61□□□□□ -1.51
SNX9Q9Y5X1 LINC01798-203ENST00000428590 553 ntTSL 4 BASIC5.61□□□□□ -1.51
SNX9Q9Y5X1 AC090018.1-201ENST00000434369 367 ntBASIC5.61□□□□□ -1.51
SNX9Q9Y5X1 Z82198.2-201ENST00000434741 567 ntTSL 4 BASIC5.61□□□□□ -1.51
SNX9Q9Y5X1 AC074367.1-201ENST00000438685 1125 ntBASIC5.61□□□□□ -1.51
SNX9Q9Y5X1 RPS29P10-201ENST00000439197 166 ntBASIC5.61□□□□□ -1.51
SNX9Q9Y5X1 C9orf135-AS1-201ENST00000439418 1375 ntTSL 2 BASIC5.61□□□□□ -1.51
SNX9Q9Y5X1 NOP56P2-201ENST00000447491 769 ntBASIC5.61□□□□□ -1.51
SNX9Q9Y5X1 HGF-207ENST00000453018 721 ntTSL 3 BASIC5.61□□□□□ -1.51
SNX9Q9Y5X1 Z99916.1-201ENST00000454253 482 ntTSL 3 BASIC5.61□□□□□ -1.51
SNX9Q9Y5X1 AP000797.2-201ENST00000475768 606 ntBASIC5.61□□□□□ -1.51
SNX9Q9Y5X1 RPS12P31-201ENST00000491419 398 ntBASIC5.61□□□□□ -1.51
SNX9Q9Y5X1 RPS24P16-201ENST00000497294 392 ntBASIC5.61□□□□□ -1.51
SNX9Q9Y5X1 AC107396.1-201ENST00000509641 735 ntTSL 5 BASIC5.61□□□□□ -1.51
SNX9Q9Y5X1 AC021193.1-201ENST00000511607 420 ntBASIC5.61□□□□□ -1.51
SNX9Q9Y5X1 DDX4-211ENST00000511853 1984 ntTSL 2 BASIC5.61□□□□□ -1.51
SNX9Q9Y5X1 RNU6-513P-201ENST00000516104 104 ntBASIC5.61□□□□□ -1.51
SNX9Q9Y5X1 RPL26L1-203ENST00000519239 679 ntAPPRIS P1 TSL 2 BASIC5.61□□□□□ -1.51
SNX9Q9Y5X1 AC021733.1-201ENST00000519786 325 ntTSL 3 BASIC5.61□□□□□ -1.51
SNX9Q9Y5X1 LINC01847-202ENST00000523311 1762 ntTSL 5 BASIC5.61□□□□□ -1.51
SNX9Q9Y5X1 CASP1-208ENST00000527979 1521 ntTSL 5 BASIC5.61□□□□□ -1.51
SNX9Q9Y5X1 OR4R2P-201ENST00000530815 597 ntBASIC5.61□□□□□ -1.51
SNX9Q9Y5X1 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC5.61□□□□□ -1.51
SNX9Q9Y5X1 AP002383.3-201ENST00000545958 593 ntTSL 4 BASIC5.61□□□□□ -1.51
SNX9Q9Y5X1 AC079362.1-201ENST00000546865 525 ntTSL 3 BASIC5.61□□□□□ -1.51
SNX9Q9Y5X1 LSM3P2-201ENST00000551246 273 ntBASIC5.61□□□□□ -1.51
SNX9Q9Y5X1 CR383656.14-201ENST00000551951 406 ntBASIC5.61□□□□□ -1.51
SNX9Q9Y5X1 CLMN-206ENST00000556441 452 ntTSL 5 BASIC5.61□□□□□ -1.51
SNX9Q9Y5X1 NQO1-206ENST00000564043 892 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
SNX9Q9Y5X1 MTND2P13-201ENST00000577438 1039 ntBASIC5.61□□□□□ -1.51
SNX9Q9Y5X1 AC010761.5-201ENST00000579468 287 ntTSL 3 BASIC5.61□□□□□ -1.51
SNX9Q9Y5X1 BNIP3P39-201ENST00000601077 554 ntBASIC5.61□□□□□ -1.51
SNX9Q9Y5X1 AC008814.1-201ENST00000603797 406 ntBASIC5.61□□□□□ -1.51
SNX9Q9Y5X1 AL356608.1-201ENST00000610034 820 ntBASIC5.61□□□□□ -1.51
SNX9Q9Y5X1 NCOA7-202ENST00000368357 5521 ntAPPRIS P3 TSL 1 (best) BASIC5.61□□□□□ -1.51
SNX9Q9Y5X1 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
SNX9Q9Y5X1 AASDH-201ENST00000205214 3590 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
SNX9Q9Y5X1 ADAM29-203ENST00000445694 3244 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
SNX9Q9Y5X1 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
SNX9Q9Y5X1 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
SNX9Q9Y5X1 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC5.61□□□□□ -1.51
SNX9Q9Y5X1 GTDC1-220ENST00000618778 2317 ntTSL 5 BASIC5.6□□□□□ -1.51
SNX9Q9Y5X1 GEN1-202ENST00000381254 6367 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
SNX9Q9Y5X1 ADGRL3-217ENST00000514591 6297 ntAPPRIS P2 TSL 5 BASIC5.6□□□□□ -1.51
SNX9Q9Y5X1 STAU2-210ENST00000521210 1950 ntTSL 2 BASIC5.6□□□□□ -1.51
SNX9Q9Y5X1 GJA9-201ENST00000357771 1799 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
SNX9Q9Y5X1 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC5.6□□□□□ -1.51
SNX9Q9Y5X1 CFAP47-202ENST00000313548 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
SNX9Q9Y5X1 MTCO1P15-201ENST00000529569 1526 ntBASIC5.6□□□□□ -1.51
SNX9Q9Y5X1 ARHGAP18-201ENST00000368149 4462 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
SNX9Q9Y5X1 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
SNX9Q9Y5X1 NUP37-201ENST00000251074 1203 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
SNX9Q9Y5X1 CLEC7A-203ENST00000310002 425 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 68.2 ms