Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 TMBIM4-201ENST00000286424 989 ntTSL 5 BASIC5.66□□□□□ -1.5
USP41Q3LFD5 IKZF3-202ENST00000346243 1296 ntTSL 5 BASIC5.66□□□□□ -1.5
USP41Q3LFD5 SPATA42-201ENST00000369989 535 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
USP41Q3LFD5 MIR600-201ENST00000385007 98 ntBASIC5.66□□□□□ -1.5
USP41Q3LFD5 CABYR-204ENST00000399499 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
USP41Q3LFD5 RNF212B-201ENST00000399905 1071 ntTSL 5 BASIC5.66□□□□□ -1.5
USP41Q3LFD5 AL139128.1-201ENST00000413921 941 ntBASIC5.66□□□□□ -1.5
USP41Q3LFD5 AC008060.2-201ENST00000415333 468 ntTSL 3 BASIC5.66□□□□□ -1.5
USP41Q3LFD5 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC5.66□□□□□ -1.5
USP41Q3LFD5 AL022310.1-201ENST00000436974 690 ntTSL 2 BASIC5.66□□□□□ -1.5
USP41Q3LFD5 IKZF3-212ENST00000439016 1246 ntTSL 5 BASIC5.66□□□□□ -1.5
USP41Q3LFD5 AC068489.1-201ENST00000453706 261 ntTSL 5 BASIC5.66□□□□□ -1.5
USP41Q3LFD5 AL035446.1-201ENST00000455011 453 ntTSL 5 BASIC5.66□□□□□ -1.5
USP41Q3LFD5 AP002345.1-201ENST00000456493 928 ntBASIC5.66□□□□□ -1.5
USP41Q3LFD5 AC058823.1-201ENST00000485315 474 ntBASIC5.66□□□□□ -1.5
USP41Q3LFD5 AC021106.1-201ENST00000509020 1058 ntBASIC5.66□□□□□ -1.5
USP41Q3LFD5 RN7SKP147-201ENST00000517154 244 ntBASIC5.66□□□□□ -1.5
USP41Q3LFD5 CDH12P4-201ENST00000517835 295 ntBASIC5.66□□□□□ -1.5
USP41Q3LFD5 CDH12P3-201ENST00000517935 295 ntBASIC5.66□□□□□ -1.5
USP41Q3LFD5 CDH12P1-201ENST00000518435 295 ntBASIC5.66□□□□□ -1.5
USP41Q3LFD5 AC008147.3-201ENST00000548666 354 ntBASIC5.66□□□□□ -1.5
USP41Q3LFD5 LSM3P2-201ENST00000551246 273 ntBASIC5.66□□□□□ -1.5
USP41Q3LFD5 AC046158.2-201ENST00000568764 707 ntTSL 3 BASIC5.66□□□□□ -1.5
USP41Q3LFD5 AC007014.1-201ENST00000572828 610 ntTSL 3 BASIC5.66□□□□□ -1.5
USP41Q3LFD5 AC239809.3-206ENST00000596091 741 ntTSL 5 BASIC5.66□□□□□ -1.5
USP41Q3LFD5 uc_338.7-201ENST00000621834 124 ntBASIC5.66□□□□□ -1.5
USP41Q3LFD5 AP001784.1-201ENST00000624107 428 ntBASIC5.66□□□□□ -1.5
USP41Q3LFD5 USP7-202ENST00000381886 3587 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
USP41Q3LFD5 TET1-201ENST00000373644 9288 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
USP41Q3LFD5 OR2T7-202ENST00000641557 3409 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
USP41Q3LFD5 MIPOL1-204ENST00000539062 2389 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
USP41Q3LFD5 ZNF347-202ENST00000452676 4553 ntAPPRIS ALT2 TSL 2 BASIC5.66□□□□□ -1.5
USP41Q3LFD5 TANK-205ENST00000405852 2155 ntTSL 5 BASIC5.66□□□□□ -1.5
USP41Q3LFD5 GAPT-202ENST00000396776 3016 ntAPPRIS P1 TSL 2 BASIC5.66□□□□□ -1.5
USP41Q3LFD5 CSNK1G3-205ENST00000510842 1979 ntAPPRIS ALT2 TSL 2 BASIC5.66□□□□□ -1.5
USP41Q3LFD5 PHACTR2P1-201ENST00000605639 1414 ntBASIC5.65□□□□□ -1.5
USP41Q3LFD5 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC5.65□□□□□ -1.5
USP41Q3LFD5 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
USP41Q3LFD5 UACA-211ENST00000560441 4723 ntAPPRIS ALT2 TSL 5 BASIC5.65□□□□□ -1.5
USP41Q3LFD5 RYR3-201ENST00000389232 15552 ntAPPRIS ALT2 TSL 5 BASIC5.65□□□□□ -1.5
USP41Q3LFD5 GABRA1-218ENST00000637827 1838 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.5
USP41Q3LFD5 RPL7-204ENST00000396467 1526 ntTSL 3 BASIC5.65□□□□□ -1.5
USP41Q3LFD5 PANDAR-201ENST00000629595 1506 ntBASIC5.65□□□□□ -1.5
USP41Q3LFD5 ADGRG2-203ENST00000356606 4630 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
USP41Q3LFD5 AC092747.4-201ENST00000620519 1861 ntBASIC5.65□□□□□ -1.5
USP41Q3LFD5 USF3-202ENST00000478658 8461 ntAPPRIS P2 TSL 5 BASIC5.65□□□□□ -1.5
USP41Q3LFD5 NUP37-201ENST00000251074 1203 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
USP41Q3LFD5 AC092681.1-201ENST00000297369 291 ntBASIC5.65□□□□□ -1.5
USP41Q3LFD5 ATP6V1G3-203ENST00000367382 611 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
USP41Q3LFD5 PRKACB-203ENST00000370684 869 ntTSL 5 BASIC5.65□□□□□ -1.5
USP41Q3LFD5 ST13P16-201ENST00000401760 781 ntBASIC5.65□□□□□ -1.5
USP41Q3LFD5 IFNA17-201ENST00000413767 980 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
USP41Q3LFD5 AL591468.1-201ENST00000417932 573 ntTSL 3 BASIC5.65□□□□□ -1.5
USP41Q3LFD5 RPS26P13-201ENST00000419030 330 ntBASIC5.65□□□□□ -1.5
USP41Q3LFD5 AL158840.1-202ENST00000425754 694 ntTSL 3 BASIC5.65□□□□□ -1.5
USP41Q3LFD5 MTCO1P51-201ENST00000427672 1060 ntBASIC5.65□□□□□ -1.5
USP41Q3LFD5 RBMY2QP-201ENST00000429799 1147 ntBASIC5.65□□□□□ -1.5
USP41Q3LFD5 FSIP2-AS1-201ENST00000429929 440 ntTSL 3 BASIC5.65□□□□□ -1.5
USP41Q3LFD5 SPATA13-AS1-201ENST00000430733 433 ntTSL 3 BASIC5.65□□□□□ -1.5
USP41Q3LFD5 ARPP21-215ENST00000432682 1015 ntTSL 5 BASIC5.65□□□□□ -1.5
USP41Q3LFD5 FSIP2-AS1-202ENST00000436557 689 ntTSL 3 BASIC5.65□□□□□ -1.5
USP41Q3LFD5 AC007327.2-201ENST00000440788 457 ntTSL 3 BASIC5.65□□□□□ -1.5
USP41Q3LFD5 LINC01828-201ENST00000445514 531 ntTSL 4 BASIC5.65□□□□□ -1.5
USP41Q3LFD5 AL354994.1-201ENST00000445967 194 ntTSL 5 BASIC5.65□□□□□ -1.5
USP41Q3LFD5 RAB28P3-201ENST00000448325 597 ntBASIC5.65□□□□□ -1.5
USP41Q3LFD5 NREP-207ENST00000450761 636 ntAPPRIS P1 TSL 4 BASIC5.65□□□□□ -1.5
USP41Q3LFD5 KCNMB2-AS1-205ENST00000451742 844 ntTSL 4 BASIC5.65□□□□□ -1.5
USP41Q3LFD5 AL512328.1-202ENST00000452640 850 ntTSL 3 BASIC5.65□□□□□ -1.5
USP41Q3LFD5 AC091685.2-201ENST00000454924 864 ntBASIC5.65□□□□□ -1.5
USP41Q3LFD5 AL353633.1-201ENST00000458480 382 ntTSL 3 BASIC5.65□□□□□ -1.5
USP41Q3LFD5 AC090543.1-201ENST00000492168 485 ntBASIC5.65□□□□□ -1.5
USP41Q3LFD5 AC005674.1-201ENST00000503493 459 ntTSL 3 BASIC5.65□□□□□ -1.5
USP41Q3LFD5 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC5.65□□□□□ -1.5
USP41Q3LFD5 HMGB1P47-201ENST00000511281 589 ntBASIC5.65□□□□□ -1.5
USP41Q3LFD5 LINC01088-208ENST00000511895 795 ntTSL 2 BASIC5.65□□□□□ -1.5
USP41Q3LFD5 AP001574.1-201ENST00000519566 546 ntTSL 4 BASIC5.65□□□□□ -1.5
USP41Q3LFD5 AC091564.3-201ENST00000527398 429 ntTSL 3 BASIC5.65□□□□□ -1.5
USP41Q3LFD5 MIR4307HG-201ENST00000548170 822 ntTSL 3 BASIC5.65□□□□□ -1.5
USP41Q3LFD5 MGAT4C-206ENST00000552435 550 ntTSL 4 BASIC5.65□□□□□ -1.5
USP41Q3LFD5 OR11H3P-201ENST00000554547 982 ntBASIC5.65□□□□□ -1.5
USP41Q3LFD5 AC087636.1-201ENST00000554787 573 ntTSL 4 BASIC5.65□□□□□ -1.5
USP41Q3LFD5 AC131532.1-201ENST00000555596 519 ntTSL 4 BASIC5.65□□□□□ -1.5
USP41Q3LFD5 USP3-AS1-202ENST00000559357 455 ntTSL 2 BASIC5.65□□□□□ -1.5
USP41Q3LFD5 AC092868.3-201ENST00000560515 784 ntBASIC5.65□□□□□ -1.5
USP41Q3LFD5 AC005244.2-201ENST00000585228 718 ntTSL 3 BASIC5.65□□□□□ -1.5
USP41Q3LFD5 AC135068.5-201ENST00000624197 983 ntBASIC5.65□□□□□ -1.5
USP41Q3LFD5 AP002371.2-201ENST00000624450 503 ntBASIC5.65□□□□□ -1.5
USP41Q3LFD5 SPATA1-206ENST00000490879 2888 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.5
USP41Q3LFD5 ZNF283-201ENST00000324461 2297 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
USP41Q3LFD5 FILIP1-203ENST00000393004 7807 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
USP41Q3LFD5 INSIG2-208ENST00000614681 1347 ntTSL 5 BASIC5.65□□□□□ -1.51
USP41Q3LFD5 GTDC1-220ENST00000618778 2317 ntTSL 5 BASIC5.65□□□□□ -1.51
USP41Q3LFD5 ADH6-202ENST00000394897 3337 ntTSL 2 BASIC5.65□□□□□ -1.51
USP41Q3LFD5 HEPHL1-201ENST00000315765 5345 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.51
USP41Q3LFD5 ATF2-202ENST00000345739 4079 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
USP41Q3LFD5 PNPLA4-203ENST00000444736 2752 ntAPPRIS P1 TSL 4 BASIC5.65□□□□□ -1.51
USP41Q3LFD5 MMRN1-202ENST00000394980 5217 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.51
USP41Q3LFD5 RGS17-202ENST00000367225 7773 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
USP41Q3LFD5 CASP10-204ENST00000346817 3926 ntAPPRIS ALT2 TSL 5 BASIC5.65□□□□□ -1.51
USP41Q3LFD5 PTK2-213ENST00000519465 3279 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 96 ms