Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Nfib-204ENSMUST00000107246 3075 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Cdc40Q9DC48 Myb-201ENSMUST00000020158 3074 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
Cdc40Q9DC48 Tbx18-201ENSMUST00000034991 4679 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Cdc40Q9DC48 Ercc6l2-203ENSMUST00000067821 2743 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
Cdc40Q9DC48 Tlcd2-202ENSMUST00000108435 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
Cdc40Q9DC48 Gm4217-201ENSMUST00000182243 1002 ntBASIC15.58■□□□□ 0.08
Cdc40Q9DC48 Dusp13-213ENSMUST00000184703 902 ntAPPRIS ALT1 TSL 5 BASIC15.58■□□□□ 0.08
Cdc40Q9DC48 Gm37025-201ENSMUST00000195159 829 ntBASIC15.58■□□□□ 0.08
Cdc40Q9DC48 Gm7791-201ENSMUST00000219066 539 ntBASIC15.58■□□□□ 0.08
Cdc40Q9DC48 Gm18032-201ENSMUST00000222541 538 ntBASIC15.58■□□□□ 0.08
Cdc40Q9DC48 Lsm10-201ENSMUST00000055575 943 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Cdc40Q9DC48 Prss27-201ENSMUST00000059482 1253 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Cdc40Q9DC48 2610035D17Rik-201ENSMUST00000127263 1861 ntTSL 5 BASIC15.58■□□□□ 0.08
Cdc40Q9DC48 Arid4b-204ENSMUST00000110536 5783 ntTSL 5 BASIC15.58■□□□□ 0.08
Cdc40Q9DC48 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Cdc40Q9DC48 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Cdc40Q9DC48 Rmnd1-201ENSMUST00000042251 3139 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Cdc40Q9DC48 Zdhhc24-201ENSMUST00000006632 2558 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Cdc40Q9DC48 Acvr1c-204ENSMUST00000112608 1497 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.08
Cdc40Q9DC48 Zfp92-202ENSMUST00000086470 2050 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Cdc40Q9DC48 Npas3-203ENSMUST00000223057 2724 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.08
Cdc40Q9DC48 Pdlim5-211ENSMUST00000198381 1555 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.08
Cdc40Q9DC48 Mef2d-201ENSMUST00000001455 5401 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Cdc40Q9DC48 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC15.57■□□□□ 0.08
Cdc40Q9DC48 Rock1-201ENSMUST00000067947 6187 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
Cdc40Q9DC48 Hoxb4-201ENSMUST00000049241 2566 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Cdc40Q9DC48 Cul4a-201ENSMUST00000016680 3728 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Cdc40Q9DC48 Cutc-202ENSMUST00000112047 1233 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Cdc40Q9DC48 Gm15138-201ENSMUST00000151778 379 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Cdc40Q9DC48 Psmd13-209ENSMUST00000164681 726 ntTSL 5 BASIC15.57■□□□□ 0.08
Cdc40Q9DC48 Gm45442-201ENSMUST00000210038 411 ntTSL 3 BASIC15.57■□□□□ 0.08
Cdc40Q9DC48 Trip10-205ENSMUST00000224885 2136 ntAPPRIS ALT2 BASIC15.57■□□□□ 0.08
Cdc40Q9DC48 Zfp524-201ENSMUST00000086349 1142 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Cdc40Q9DC48 Igfbp2-201ENSMUST00000047328 1307 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Cdc40Q9DC48 Rmdn3-201ENSMUST00000094695 2249 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Cdc40Q9DC48 Sntg2-201ENSMUST00000021004 2411 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Cdc40Q9DC48 Plppr2-201ENSMUST00000046371 2626 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Cdc40Q9DC48 Ecel1-201ENSMUST00000027463 2695 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Cdc40Q9DC48 Nfe2l1-202ENSMUST00000107657 3869 ntAPPRIS P3 TSL 5 BASIC15.57■□□□□ 0.08
Cdc40Q9DC48 D730003I15Rik-202ENSMUST00000194375 1667 ntBASIC15.57■□□□□ 0.08
Cdc40Q9DC48 Acss2-201ENSMUST00000029135 2931 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Cdc40Q9DC48 Pgm2l1-202ENSMUST00000084935 8834 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Cdc40Q9DC48 Inpp5f-201ENSMUST00000043138 4734 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Cdc40Q9DC48 Map3k10-202ENSMUST00000108341 3403 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
Cdc40Q9DC48 Gm43548-201ENSMUST00000197139 2353 ntBASIC15.56■□□□□ 0.08
Cdc40Q9DC48 Bicd2-201ENSMUST00000048544 6309 ntAPPRIS P4 TSL 1 (best) BASIC15.56■□□□□ 0.08
Cdc40Q9DC48 Mafg-202ENSMUST00000106180 732 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
Cdc40Q9DC48 Mafg-204ENSMUST00000106182 1104 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
Cdc40Q9DC48 Cul4a-202ENSMUST00000121426 1044 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Cdc40Q9DC48 Ccdc125-202ENSMUST00000170347 1216 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Cdc40Q9DC48 4930544I03Rik-201ENSMUST00000181184 1276 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Cdc40Q9DC48 AC134329.2-201ENSMUST00000217897 428 ntBASIC15.56■□□□□ 0.08
Cdc40Q9DC48 Grcc10-201ENSMUST00000004389 863 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Cdc40Q9DC48 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
Cdc40Q9DC48 Vgll3-201ENSMUST00000168064 7009 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Cdc40Q9DC48 Lhx6-208ENSMUST00000148852 1481 ntTSL 5 BASIC15.56■□□□□ 0.08
Cdc40Q9DC48 Disc1-208ENSMUST00000122389 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Cdc40Q9DC48 Fam57b-207ENSMUST00000207020 1777 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Cdc40Q9DC48 Gm10649-203ENSMUST00000148066 1812 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Cdc40Q9DC48 Ing1-202ENSMUST00000209565 1971 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Cdc40Q9DC48 Mfsd13a-202ENSMUST00000128041 2223 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Cdc40Q9DC48 Sh3gl2-203ENSMUST00000107188 2286 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Cdc40Q9DC48 Ppme1-201ENSMUST00000032963 2772 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Cdc40Q9DC48 Disp3-201ENSMUST00000047720 5282 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
Cdc40Q9DC48 Ptch1-201ENSMUST00000021921 7725 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Cdc40Q9DC48 Pcdh1-203ENSMUST00000160721 5416 ntTSL 5 BASIC15.55■□□□□ 0.08
Cdc40Q9DC48 Brpf1-202ENSMUST00000113119 4826 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Cdc40Q9DC48 Scarf2-201ENSMUST00000012161 3302 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Cdc40Q9DC48 Trp73-203ENSMUST00000105643 1916 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
Cdc40Q9DC48 Phactr2-203ENSMUST00000105545 8556 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Cdc40Q9DC48 AA467197-202ENSMUST00000110512 751 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Cdc40Q9DC48 Tekt5-202ENSMUST00000115831 1277 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
Cdc40Q9DC48 Pdcd5-202ENSMUST00000120714 767 ntTSL 3 BASIC15.55■□□□□ 0.08
Cdc40Q9DC48 Gm16061-201ENSMUST00000122167 857 ntBASIC15.55■□□□□ 0.08
Cdc40Q9DC48 Muc2-203ENSMUST00000179227 399 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Cdc40Q9DC48 Gm28793-201ENSMUST00000190845 413 ntTSL 5 BASIC15.55■□□□□ 0.08
Cdc40Q9DC48 Rpl39l-201ENSMUST00000044103 805 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Cdc40Q9DC48 Fam126a-201ENSMUST00000030849 5659 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Cdc40Q9DC48 Ptpdc1-204ENSMUST00000222028 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Cdc40Q9DC48 2210016L21Rik-201ENSMUST00000031538 2607 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Cdc40Q9DC48 Zmym3-201ENSMUST00000063577 6057 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Cdc40Q9DC48 Agps-201ENSMUST00000047232 7359 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Cdc40Q9DC48 Igsf11-201ENSMUST00000023478 3443 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Cdc40Q9DC48 Glmn-201ENSMUST00000078021 2015 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Cdc40Q9DC48 Brpf1-203ENSMUST00000113121 4603 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
Cdc40Q9DC48 Pgm3-202ENSMUST00000072585 1920 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Cdc40Q9DC48 Smad1-202ENSMUST00000066091 3099 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Cdc40Q9DC48 Plppr5-202ENSMUST00000106473 4294 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Cdc40Q9DC48 Gm6093-201ENSMUST00000221792 1623 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Cdc40Q9DC48 Adgra3-201ENSMUST00000030971 4480 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Cdc40Q9DC48 Gm26781-201ENSMUST00000181385 1477 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Cdc40Q9DC48 Bmp8a-201ENSMUST00000040496 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Cdc40Q9DC48 Mpdu1-201ENSMUST00000018905 1321 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Cdc40Q9DC48 Fam166b-201ENSMUST00000052829 1349 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Cdc40Q9DC48 Zdhhc6-207ENSMUST00000224897 2168 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
Cdc40Q9DC48 Asnsd1-202ENSMUST00000123519 983 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Cdc40Q9DC48 Mir142hg-201ENSMUST00000123700 269 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Cdc40Q9DC48 Gm17661-201ENSMUST00000170317 270 ntBASIC15.54■□□□□ 0.08
Cdc40Q9DC48 Rgcc-201ENSMUST00000022595 918 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Cdc40Q9DC48 Hint2-201ENSMUST00000030192 610 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Retrieved 100 of 76,532 protein–RNA pairs in 65.7 ms