Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Stk39-201ENSMUST00000102715 3536 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Msh4Q99MT2 Zfyve19-201ENSMUST00000090174 2008 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Msh4Q99MT2 Cnksr1-201ENSMUST00000030645 2468 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Msh4Q99MT2 4833413E03Rik-201ENSMUST00000013706 1091 ntTSL 5 BASIC16.35■□□□□ 0.21
Msh4Q99MT2 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC16.35■□□□□ 0.21
Msh4Q99MT2 Gm43353-201ENSMUST00000199224 1295 ntBASIC16.35■□□□□ 0.21
Msh4Q99MT2 Arntl-204ENSMUST00000210238 2976 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
Msh4Q99MT2 Gpr20-201ENSMUST00000064166 2144 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Msh4Q99MT2 Sar1a-201ENSMUST00000020285 2613 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Msh4Q99MT2 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
Msh4Q99MT2 Col11a2-202ENSMUST00000114252 5620 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
Msh4Q99MT2 Agbl4-205ENSMUST00000106591 1406 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Msh4Q99MT2 Asic2-201ENSMUST00000021045 3436 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Msh4Q99MT2 Gm6093-201ENSMUST00000221792 1623 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Msh4Q99MT2 Vangl2-203ENSMUST00000111264 2349 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Msh4Q99MT2 Fam57b-201ENSMUST00000079423 2328 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Msh4Q99MT2 Wdtc1-201ENSMUST00000043305 4191 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Msh4Q99MT2 Tmem125-201ENSMUST00000060214 1864 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
Msh4Q99MT2 Lrrtm1-202ENSMUST00000159616 2541 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Msh4Q99MT2 Foxp4-203ENSMUST00000113263 3156 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
Msh4Q99MT2 Ablim1-204ENSMUST00000111524 1251 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Msh4Q99MT2 Slc2a8-204ENSMUST00000153484 1168 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Msh4Q99MT2 4933406B15Rik-201ENSMUST00000220065 1182 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Msh4Q99MT2 Gm26709-202ENSMUST00000223049 819 ntTSL 5 BASIC16.34■□□□□ 0.21
Msh4Q99MT2 Mpc2-201ENSMUST00000027853 1025 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Msh4Q99MT2 Glmn-201ENSMUST00000078021 2015 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Msh4Q99MT2 Wasf1-202ENSMUST00000105509 2719 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
Msh4Q99MT2 Camk2d-226ENSMUST00000199300 5524 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Msh4Q99MT2 Abhd11-206ENSMUST00000154469 1473 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Msh4Q99MT2 1700096K18Rik-201ENSMUST00000188465 1454 ntBASIC16.34■□□□□ 0.21
Msh4Q99MT2 Cxcl14-202ENSMUST00000224801 1467 ntBASIC16.34■□□□□ 0.21
Msh4Q99MT2 Slc22a12-201ENSMUST00000113451 2213 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Msh4Q99MT2 Med18-201ENSMUST00000102567 1675 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Msh4Q99MT2 Tm9sf1-205ENSMUST00000122358 2517 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Msh4Q99MT2 Cdc42ep3-201ENSMUST00000068958 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Msh4Q99MT2 Coro2a-202ENSMUST00000107756 4154 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
Msh4Q99MT2 Znfx1-201ENSMUST00000048988 7218 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Msh4Q99MT2 Gm7638-201ENSMUST00000121348 967 ntBASIC16.33■□□□□ 0.2
Msh4Q99MT2 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Msh4Q99MT2 AC159205.6-201ENSMUST00000224935 887 ntBASIC16.33■□□□□ 0.2
Msh4Q99MT2 AC121577.1-201ENSMUST00000227302 707 ntBASIC16.33■□□□□ 0.2
Msh4Q99MT2 Pacsin1-203ENSMUST00000114872 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Msh4Q99MT2 Pick1-206ENSMUST00000166155 1699 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Msh4Q99MT2 Urgcp-206ENSMUST00000170116 5528 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
Msh4Q99MT2 Rhof-201ENSMUST00000031401 2208 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Msh4Q99MT2 Plekha8-202ENSMUST00000119706 6739 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
Msh4Q99MT2 H6pd-201ENSMUST00000030830 4745 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
Msh4Q99MT2 Ewsr1-203ENSMUST00000079949 2588 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
Msh4Q99MT2 Cap1-202ENSMUST00000106255 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Msh4Q99MT2 Pld2-203ENSMUST00000108557 3655 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Msh4Q99MT2 Syt8-202ENSMUST00000105976 1289 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Msh4Q99MT2 Nmnat3-203ENSMUST00000112938 848 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Msh4Q99MT2 Syt8-205ENSMUST00000122393 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Msh4Q99MT2 Aldh2-202ENSMUST00000129753 1799 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Msh4Q99MT2 Ldb1-205ENSMUST00000137771 2014 ntTSL 5 BASIC16.32■□□□□ 0.2
Msh4Q99MT2 2210408F21Rik-208ENSMUST00000144612 450 ntTSL 3 BASIC16.32■□□□□ 0.2
Msh4Q99MT2 Nipsnap3b-201ENSMUST00000015391 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Msh4Q99MT2 Gm10231-201ENSMUST00000181584 441 ntBASIC16.32■□□□□ 0.2
Msh4Q99MT2 A930001A20Rik-201ENSMUST00000182586 1366 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Msh4Q99MT2 Gm26938-201ENSMUST00000182839 744 ntAPPRIS P1 TSL 3 BASIC16.32■□□□□ 0.2
Msh4Q99MT2 Pld2-201ENSMUST00000018429 3659 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
Msh4Q99MT2 Atp5g2-202ENSMUST00000185641 731 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Msh4Q99MT2 Gm10175-202ENSMUST00000208752 441 ntBASIC16.32■□□□□ 0.2
Msh4Q99MT2 Gm45412-201ENSMUST00000210217 2275 ntBASIC16.32■□□□□ 0.2
Msh4Q99MT2 Gm45623-201ENSMUST00000210744 1457 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
Msh4Q99MT2 Xpa-201ENSMUST00000030013 955 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Msh4Q99MT2 Csf3-201ENSMUST00000038886 1413 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Msh4Q99MT2 Celf1-201ENSMUST00000005643 4830 ntAPPRIS P4 TSL 5 BASIC16.32■□□□□ 0.2
Msh4Q99MT2 Atp5g2-201ENSMUST00000075630 441 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Msh4Q99MT2 Myoz1-201ENSMUST00000090469 1289 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Msh4Q99MT2 Nsun5-201ENSMUST00000000940 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Msh4Q99MT2 Tlk1-201ENSMUST00000038584 4280 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Msh4Q99MT2 Gm26917-202ENSMUST00000192833 3329 ntBASIC16.32■□□□□ 0.2
Msh4Q99MT2 Shisa2-201ENSMUST00000053949 3119 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Msh4Q99MT2 Evx1-201ENSMUST00000031787 2877 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Msh4Q99MT2 Adgra3-201ENSMUST00000030971 4480 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Msh4Q99MT2 Camk2n1-201ENSMUST00000050918 4444 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Msh4Q99MT2 Stambp-206ENSMUST00000206400 2144 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Msh4Q99MT2 Ctsf-201ENSMUST00000119694 1975 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Msh4Q99MT2 4933428P19Rik-201ENSMUST00000199616 1376 ntBASIC16.31■□□□□ 0.2
Msh4Q99MT2 Eefsec-201ENSMUST00000165242 2679 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Msh4Q99MT2 Ppp1r1b-204ENSMUST00000137634 1343 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Msh4Q99MT2 Zfp446-202ENSMUST00000108535 2594 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Msh4Q99MT2 Rpl18a-206ENSMUST00000212709 700 ntTSL 2 BASIC16.31■□□□□ 0.2
Msh4Q99MT2 Gm32151-201ENSMUST00000223521 915 ntTSL 5 BASIC16.31■□□□□ 0.2
Msh4Q99MT2 Dctn3-201ENSMUST00000030158 973 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Msh4Q99MT2 Ykt6-201ENSMUST00000002818 2541 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Msh4Q99MT2 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Msh4Q99MT2 Mal-202ENSMUST00000028854 2778 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Msh4Q99MT2 Cdk17-201ENSMUST00000069965 3615 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Msh4Q99MT2 Pigt-201ENSMUST00000103101 2562 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Msh4Q99MT2 Pcmt1-202ENSMUST00000159917 2491 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
Msh4Q99MT2 Mbp-201ENSMUST00000047865 2492 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Msh4Q99MT2 Fezf1-201ENSMUST00000031709 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Msh4Q99MT2 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Msh4Q99MT2 Sgsm1-204ENSMUST00000112325 2274 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Msh4Q99MT2 Dtwd2-203ENSMUST00000163590 2857 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Msh4Q99MT2 Fhl1-203ENSMUST00000114769 2770 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Msh4Q99MT2 Gapdh-202ENSMUST00000117757 1273 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Msh4Q99MT2 Gm37025-201ENSMUST00000195159 829 ntBASIC16.3■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 28.7 ms