Protein–RNA interactions for Protein: Q99LF4

Rtcb, tRNA-splicing ligase RtcB homolog, mousemouse

Known RBP Predictions only

Length 505 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RtcbQ99LF4 Taz-202ENSMUST00000114180 1786 ntAPPRIS ALT1 TSL 5 BASIC20.69■□□□□ 0.9
RtcbQ99LF4 Sept8-203ENSMUST00000120878 1806 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
RtcbQ99LF4 Dcps-202ENSMUST00000119847 1445 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
RtcbQ99LF4 Isl2-201ENSMUST00000034869 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
RtcbQ99LF4 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
RtcbQ99LF4 9930012K11Rik-205ENSMUST00000153871 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
RtcbQ99LF4 9930012K11Rik-201ENSMUST00000058240 1986 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
RtcbQ99LF4 Jam2-201ENSMUST00000098407 1998 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
RtcbQ99LF4 Mff-208ENSMUST00000160786 1645 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
RtcbQ99LF4 Nrn1-201ENSMUST00000037623 1619 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
RtcbQ99LF4 Rasgrp2-224ENSMUST00000167240 2192 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
RtcbQ99LF4 Rpl39l-202ENSMUST00000121292 550 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
RtcbQ99LF4 Tmem208-201ENSMUST00000015000 785 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
RtcbQ99LF4 Sec61g-206ENSMUST00000166950 754 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
RtcbQ99LF4 Sec61g-207ENSMUST00000178855 779 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
RtcbQ99LF4 1700025J12Rik-201ENSMUST00000205586 630 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
RtcbQ99LF4 Ap2s1-204ENSMUST00000205607 372 ntTSL 3 BASIC20.68■□□□□ 0.9
RtcbQ99LF4 Cyba-202ENSMUST00000212600 638 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
RtcbQ99LF4 Gm16845-202ENSMUST00000216270 567 ntTSL 2 BASIC20.68■□□□□ 0.9
RtcbQ99LF4 AC127349.1-201ENSMUST00000224590 266 ntBASIC20.68■□□□□ 0.9
RtcbQ99LF4 Ndufb9-201ENSMUST00000022980 704 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
RtcbQ99LF4 Tmem52-201ENSMUST00000023920 932 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
RtcbQ99LF4 Lce3b-201ENSMUST00000046234 562 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
RtcbQ99LF4 Keap1-206ENSMUST00000216436 2498 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
RtcbQ99LF4 Cnih1-201ENSMUST00000015903 1538 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
RtcbQ99LF4 Zpbp2-203ENSMUST00000107509 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
RtcbQ99LF4 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
RtcbQ99LF4 Sigirr-203ENSMUST00000209294 1612 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
RtcbQ99LF4 Slc39a1-201ENSMUST00000015467 2364 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RtcbQ99LF4 Stk32c-202ENSMUST00000165870 1883 ntTSL 5 BASIC20.67■□□□□ 0.9
RtcbQ99LF4 Gm15173-201ENSMUST00000122049 433 ntBASIC20.67■□□□□ 0.9
RtcbQ99LF4 Tpt1-205ENSMUST00000142061 996 ntTSL 5 BASIC20.67■□□□□ 0.9
RtcbQ99LF4 1190007I07Rik-202ENSMUST00000176200 586 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
RtcbQ99LF4 1190007I07Rik-203ENSMUST00000183363 406 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RtcbQ99LF4 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC20.67■□□□□ 0.9
RtcbQ99LF4 Bhlha9-201ENSMUST00000056184 1207 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
RtcbQ99LF4 Fam26f-201ENSMUST00000062784 1094 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RtcbQ99LF4 1190007I07Rik-201ENSMUST00000079648 716 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RtcbQ99LF4 Atp2c1-204ENSMUST00000112558 5642 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
RtcbQ99LF4 Gm10518-201ENSMUST00000097454 1301 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
RtcbQ99LF4 Slc25a2-201ENSMUST00000058635 1369 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
RtcbQ99LF4 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RtcbQ99LF4 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RtcbQ99LF4 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RtcbQ99LF4 Gapvd1-201ENSMUST00000028224 5695 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
RtcbQ99LF4 A4galt-201ENSMUST00000049530 2088 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
RtcbQ99LF4 Ccdc102a-201ENSMUST00000077955 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
RtcbQ99LF4 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
RtcbQ99LF4 Rps6ka2-201ENSMUST00000024575 5404 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
RtcbQ99LF4 Ftl2-ps-201ENSMUST00000118517 552 ntBASIC20.66■□□□□ 0.9
RtcbQ99LF4 Gm12260-201ENSMUST00000122447 411 ntBASIC20.66■□□□□ 0.9
RtcbQ99LF4 Gm7506-201ENSMUST00000207758 815 ntBASIC20.66■□□□□ 0.9
RtcbQ99LF4 Chmp2a-201ENSMUST00000005711 949 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
RtcbQ99LF4 Gm15590-201ENSMUST00000078419 552 ntBASIC20.66■□□□□ 0.9
RtcbQ99LF4 Gm8909-203ENSMUST00000173353 1428 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
RtcbQ99LF4 Tm2d3-202ENSMUST00000065574 1478 ntAPPRIS P4 TSL 1 (best) BASIC20.66■□□□□ 0.9
RtcbQ99LF4 Rtn1-201ENSMUST00000021497 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
RtcbQ99LF4 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
RtcbQ99LF4 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
RtcbQ99LF4 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
RtcbQ99LF4 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
RtcbQ99LF4 Gnb1-203ENSMUST00000165335 3143 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
RtcbQ99LF4 Ppp3cb-206ENSMUST00000161989 2322 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
RtcbQ99LF4 Fam83d-201ENSMUST00000029183 2266 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
RtcbQ99LF4 Bend6-202ENSMUST00000115161 2231 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
RtcbQ99LF4 Gm2756-201ENSMUST00000195851 400 ntBASIC20.65■□□□□ 0.9
RtcbQ99LF4 Pecr-202ENSMUST00000097698 932 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
RtcbQ99LF4 8030462N17Rik-201ENSMUST00000074653 3418 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
RtcbQ99LF4 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
RtcbQ99LF4 Vps53-202ENSMUST00000094015 2645 ntTSL 5 BASIC20.65■□□□□ 0.9
RtcbQ99LF4 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
RtcbQ99LF4 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
RtcbQ99LF4 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
RtcbQ99LF4 Gm15442-201ENSMUST00000117905 1527 ntBASIC20.64■□□□□ 0.9
RtcbQ99LF4 Zmym3-204ENSMUST00000118092 1502 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
RtcbQ99LF4 Ran-201ENSMUST00000031383 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
RtcbQ99LF4 Rab3a-201ENSMUST00000034301 1363 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
RtcbQ99LF4 Cnbp-202ENSMUST00000113617 952 ntTSL 5 BASIC20.64■□□□□ 0.89
RtcbQ99LF4 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
RtcbQ99LF4 Pih1d1-206ENSMUST00000210139 1077 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
RtcbQ99LF4 AC164441.1-201ENSMUST00000221369 1004 ntTSL 5 BASIC20.64■□□□□ 0.89
RtcbQ99LF4 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC20.64■□□□□ 0.89
RtcbQ99LF4 Men1-205ENSMUST00000113501 2508 ntTSL 5 BASIC20.64■□□□□ 0.89
RtcbQ99LF4 Usb1-201ENSMUST00000034245 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
RtcbQ99LF4 Mrpl49-201ENSMUST00000007482 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
RtcbQ99LF4 Sdcbp-201ENSMUST00000029912 2745 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RtcbQ99LF4 Fgfr2-211ENSMUST00000120187 4311 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
RtcbQ99LF4 Dut-201ENSMUST00000051605 1950 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RtcbQ99LF4 Pomgnt2-207ENSMUST00000217610 2413 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RtcbQ99LF4 Ccl27a-202ENSMUST00000108032 350 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
RtcbQ99LF4 1700023H06Rik-201ENSMUST00000161006 1044 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
RtcbQ99LF4 Hsd3b2-203ENSMUST00000177651 1122 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
RtcbQ99LF4 Rps13-ps1-201ENSMUST00000183478 538 ntBASIC20.63■□□□□ 0.89
RtcbQ99LF4 Urah-204ENSMUST00000185612 716 ntAPPRIS P3 TSL 3 BASIC20.63■□□□□ 0.89
RtcbQ99LF4 Urah-207ENSMUST00000211372 688 ntAPPRIS P3 TSL 2 BASIC20.63■□□□□ 0.89
RtcbQ99LF4 Icam4-202ENSMUST00000215077 1028 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
RtcbQ99LF4 AC154222.1-201ENSMUST00000223882 475 ntBASIC20.63■□□□□ 0.89
RtcbQ99LF4 Urah-201ENSMUST00000026554 890 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
RtcbQ99LF4 A830031A19Rik-201ENSMUST00000068360 757 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RtcbQ99LF4 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 26.2 ms