Protein–RNA interactions for Protein: Q5QNQ9

Col27a1, Collagen alpha-1(XXVII) chain, mousemouse

Predictions only

Length 1,845 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col27a1Q5QNQ9 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Col27a1Q5QNQ9 Igsf23-201ENSMUST00000043440 1908 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Col27a1Q5QNQ9 St8sia5-201ENSMUST00000075290 1841 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Col27a1Q5QNQ9 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Col27a1Q5QNQ9 Smad2-205ENSMUST00000168423 2857 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
Col27a1Q5QNQ9 Dio1-202ENSMUST00000106748 396 ntTSL 5 BASIC16.17■□□□□ 0.18
Col27a1Q5QNQ9 Hagh-202ENSMUST00000118788 1191 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
Col27a1Q5QNQ9 Gm17178-201ENSMUST00000163273 357 ntTSL 5 BASIC16.17■□□□□ 0.18
Col27a1Q5QNQ9 Gm26854-201ENSMUST00000180418 705 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Col27a1Q5QNQ9 Gm27646-201ENSMUST00000183989 110 ntBASIC16.17■□□□□ 0.18
Col27a1Q5QNQ9 1700028B04Rik-202ENSMUST00000190841 971 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Col27a1Q5QNQ9 Cplx3-202ENSMUST00000215487 594 ntTSL 3 BASIC16.17■□□□□ 0.18
Col27a1Q5QNQ9 Ccdc88c-204ENSMUST00000223097 1253 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Col27a1Q5QNQ9 Gm8396-201ENSMUST00000057361 823 ntBASIC16.17■□□□□ 0.18
Col27a1Q5QNQ9 Dnaaf5-203ENSMUST00000196441 2426 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Col27a1Q5QNQ9 Sgcd-201ENSMUST00000077221 1617 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Col27a1Q5QNQ9 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC16.16■□□□□ 0.18
Col27a1Q5QNQ9 Fam3c-205ENSMUST00000165576 2826 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col27a1Q5QNQ9 Golga5-202ENSMUST00000179218 2827 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col27a1Q5QNQ9 4933434E20Rik-203ENSMUST00000068798 1500 ntTSL 5 BASIC16.16■□□□□ 0.18
Col27a1Q5QNQ9 Sept8-203ENSMUST00000120878 1806 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
Col27a1Q5QNQ9 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col27a1Q5QNQ9 AC159106.1-201ENSMUST00000224421 690 ntBASIC16.16■□□□□ 0.18
Col27a1Q5QNQ9 AC154572.2-201ENSMUST00000225105 997 ntBASIC16.16■□□□□ 0.18
Col27a1Q5QNQ9 Tspo-201ENSMUST00000047419 837 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col27a1Q5QNQ9 Romo1-201ENSMUST00000088610 569 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col27a1Q5QNQ9 Rab9-202ENSMUST00000112091 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col27a1Q5QNQ9 Ube2l6-201ENSMUST00000102642 1560 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col27a1Q5QNQ9 Bicdl1-204ENSMUST00000121746 1568 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Col27a1Q5QNQ9 Ran-201ENSMUST00000031383 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col27a1Q5QNQ9 Fcho2-208ENSMUST00000224992 2964 ntBASIC16.16■□□□□ 0.18
Col27a1Q5QNQ9 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col27a1Q5QNQ9 Ruvbl2-201ENSMUST00000107771 1834 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col27a1Q5QNQ9 Dcbld1-203ENSMUST00000218582 2795 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Col27a1Q5QNQ9 Kcnk3-201ENSMUST00000066295 3811 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Col27a1Q5QNQ9 9330154J02Rik-202ENSMUST00000185960 2557 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Col27a1Q5QNQ9 Chchd6-202ENSMUST00000113550 1042 ntTSL 5 BASIC16.15■□□□□ 0.18
Col27a1Q5QNQ9 Dcps-202ENSMUST00000119847 1445 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Col27a1Q5QNQ9 Oip5-202ENSMUST00000123818 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Col27a1Q5QNQ9 Pmf1-205ENSMUST00000193338 795 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Col27a1Q5QNQ9 Gm5312-201ENSMUST00000203728 547 ntBASIC16.15■□□□□ 0.18
Col27a1Q5QNQ9 Tspyl-ps-201ENSMUST00000220692 1117 ntBASIC16.15■□□□□ 0.18
Col27a1Q5QNQ9 3830406C13Rik-207ENSMUST00000223927 1010 ntBASIC16.15■□□□□ 0.18
Col27a1Q5QNQ9 Chchd6-201ENSMUST00000032172 1121 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Col27a1Q5QNQ9 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
Col27a1Q5QNQ9 Tssc4-206ENSMUST00000177841 1364 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
Col27a1Q5QNQ9 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Col27a1Q5QNQ9 Icam5-201ENSMUST00000019616 2947 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Col27a1Q5QNQ9 Dbnl-203ENSMUST00000109845 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Col27a1Q5QNQ9 Mef2b-203ENSMUST00000110143 1312 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Col27a1Q5QNQ9 Mef2b-204ENSMUST00000110146 1342 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
Col27a1Q5QNQ9 Bhlhe41-202ENSMUST00000111703 744 ntTSL 3 BASIC16.15■□□□□ 0.18
Col27a1Q5QNQ9 Xrcc2-204ENSMUST00000134972 464 ntTSL 3 BASIC16.15■□□□□ 0.18
Col27a1Q5QNQ9 BC022687-202ENSMUST00000177808 1207 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Col27a1Q5QNQ9 Gm10605-201ENSMUST00000182342 665 ntTSL 3 BASIC16.15■□□□□ 0.18
Col27a1Q5QNQ9 Rgs10-201ENSMUST00000033133 880 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Col27a1Q5QNQ9 Camsap3-212ENSMUST00000208240 2572 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Col27a1Q5QNQ9 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
Col27a1Q5QNQ9 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
Col27a1Q5QNQ9 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Col27a1Q5QNQ9 Fez2-201ENSMUST00000070039 1939 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col27a1Q5QNQ9 Gm2109-201ENSMUST00000189326 1409 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Col27a1Q5QNQ9 Acaa1a-201ENSMUST00000039784 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col27a1Q5QNQ9 6030443J06Rik-204ENSMUST00000195898 786 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Col27a1Q5QNQ9 Gm8655-201ENSMUST00000221159 852 ntBASIC16.14■□□□□ 0.17
Col27a1Q5QNQ9 Ftl1-ps1-202ENSMUST00000222435 938 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
Col27a1Q5QNQ9 Mt3-201ENSMUST00000034211 536 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col27a1Q5QNQ9 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col27a1Q5QNQ9 Gpr162-204ENSMUST00000204667 2855 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col27a1Q5QNQ9 Gjb1-201ENSMUST00000052130 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col27a1Q5QNQ9 Cacnb3-201ENSMUST00000003442 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col27a1Q5QNQ9 Htatip2-201ENSMUST00000085272 1418 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col27a1Q5QNQ9 Gm16976-202ENSMUST00000127408 1515 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Col27a1Q5QNQ9 Lypd1-205ENSMUST00000162899 1511 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Col27a1Q5QNQ9 Hist1h4a-201ENSMUST00000102964 539 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
Col27a1Q5QNQ9 Ube2v2-202ENSMUST00000115776 1236 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Col27a1Q5QNQ9 Gm16151-201ENSMUST00000129696 639 ntTSL 3 BASIC16.13■□□□□ 0.17
Col27a1Q5QNQ9 Gm15862-201ENSMUST00000146349 361 ntTSL 2 BASIC16.13■□□□□ 0.17
Col27a1Q5QNQ9 Esd-207ENSMUST00000176957 1117 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Col27a1Q5QNQ9 Ifi27-204ENSMUST00000079294 963 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col27a1Q5QNQ9 Gm45203-201ENSMUST00000206384 1831 ntBASIC16.13■□□□□ 0.17
Col27a1Q5QNQ9 Osbpl1a-205ENSMUST00000119512 1947 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Col27a1Q5QNQ9 Prkcg-202ENSMUST00000172109 2119 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Col27a1Q5QNQ9 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
Col27a1Q5QNQ9 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col27a1Q5QNQ9 Podnl1-201ENSMUST00000093380 2090 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col27a1Q5QNQ9 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col27a1Q5QNQ9 Nmnat3-201ENSMUST00000112935 2166 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Col27a1Q5QNQ9 Gm6627-201ENSMUST00000218299 2386 ntBASIC16.13■□□□□ 0.17
Col27a1Q5QNQ9 Tnnc2-201ENSMUST00000103095 700 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Col27a1Q5QNQ9 Gm15246-201ENSMUST00000149873 540 ntTSL 3 BASIC16.12■□□□□ 0.17
Col27a1Q5QNQ9 Gm27494-201ENSMUST00000184735 189 ntBASIC16.12■□□□□ 0.17
Col27a1Q5QNQ9 Tm2d3-202ENSMUST00000065574 1478 ntAPPRIS P4 TSL 1 (best) BASIC16.12■□□□□ 0.17
Col27a1Q5QNQ9 C130026I21Rik-201ENSMUST00000064341 1561 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
Col27a1Q5QNQ9 Ctu1-201ENSMUST00000038332 2475 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Col27a1Q5QNQ9 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Col27a1Q5QNQ9 Mrpl49-201ENSMUST00000007482 1722 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Col27a1Q5QNQ9 Phykpl-201ENSMUST00000020625 1609 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Col27a1Q5QNQ9 Irf3-202ENSMUST00000107834 1429 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Col27a1Q5QNQ9 B4galt3-205ENSMUST00000126699 1758 ntTSL 5 BASIC16.12■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 25.3 ms