Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Insc-201ENSMUST00000117543 2170 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
Rnf40Q3U319 Ipo8-201ENSMUST00000048418 5360 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Rnf40Q3U319 Arhgap42-203ENSMUST00000183182 1458 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Rnf40Q3U319 Gm9821-201ENSMUST00000178895 1953 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
Rnf40Q3U319 Fbxl21-201ENSMUST00000045428 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Rnf40Q3U319 Tra2a-201ENSMUST00000031841 1799 ntAPPRIS P3 TSL 5 BASIC17.44■□□□□ 0.38
Rnf40Q3U319 Ccdc51-201ENSMUST00000026735 1526 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Rnf40Q3U319 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Rnf40Q3U319 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Rnf40Q3U319 Ankle2-206ENSMUST00000197188 4077 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
Rnf40Q3U319 Ttll5-204ENSMUST00000110220 2655 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Rnf40Q3U319 P2ry2-206ENSMUST00000208340 2693 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Rnf40Q3U319 Gm42882-201ENSMUST00000201788 506 ntTSL 3 BASIC17.44■□□□□ 0.38
Rnf40Q3U319 AC073947.1-201ENSMUST00000216991 649 ntBASIC17.44■□□□□ 0.38
Rnf40Q3U319 Tox2-201ENSMUST00000099110 2166 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
Rnf40Q3U319 Rusc1-203ENSMUST00000166687 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Rnf40Q3U319 Tnfrsf25-201ENSMUST00000025706 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Rnf40Q3U319 Dnajb12-201ENSMUST00000020309 2238 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Rnf40Q3U319 Camkv-201ENSMUST00000035700 3277 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Rnf40Q3U319 Grhl2-203ENSMUST00000161405 1996 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Rnf40Q3U319 Slmap-203ENSMUST00000102956 5476 ntAPPRIS P3 TSL 5 BASIC17.44■□□□□ 0.38
Rnf40Q3U319 Ugcg-201ENSMUST00000030074 4012 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Rnf40Q3U319 Gtpbp3-201ENSMUST00000007754 2800 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Rnf40Q3U319 Rpl5-201ENSMUST00000082223 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Rnf40Q3U319 Nisch-221ENSMUST00000171735 1763 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Rnf40Q3U319 Fa2h-201ENSMUST00000038475 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Rnf40Q3U319 Acy3-201ENSMUST00000054030 1505 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Rnf40Q3U319 Anapc1-202ENSMUST00000110332 1214 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Rnf40Q3U319 Pdlim5-202ENSMUST00000058626 873 ntTSL 5 BASIC17.43■□□□□ 0.38
Rnf40Q3U319 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC17.43■□□□□ 0.38
Rnf40Q3U319 Mapk8ip3-208ENSMUST00000121787 5431 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Rnf40Q3U319 Rnf138-202ENSMUST00000072847 3002 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Rnf40Q3U319 Tm7sf2-202ENSMUST00000113543 1498 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Rnf40Q3U319 Olfr94-203ENSMUST00000222190 1611 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
Rnf40Q3U319 Snrnp48-201ENSMUST00000091641 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Rnf40Q3U319 Phax-201ENSMUST00000008445 1942 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
Rnf40Q3U319 Cdc23-201ENSMUST00000025228 2084 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Rnf40Q3U319 Agbl3-205ENSMUST00000115017 3719 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
Rnf40Q3U319 Tmem229b-201ENSMUST00000056660 3860 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Rnf40Q3U319 A4galt-202ENSMUST00000164614 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Rnf40Q3U319 Gnal-201ENSMUST00000025402 5616 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Rnf40Q3U319 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Rnf40Q3U319 Git2-215ENSMUST00000178440 4944 ntTSL 5 BASIC17.42■□□□□ 0.38
Rnf40Q3U319 Git2-201ENSMUST00000043283 4938 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Rnf40Q3U319 Gm26560-201ENSMUST00000181240 2619 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Rnf40Q3U319 Lgr6-201ENSMUST00000044828 6675 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Rnf40Q3U319 Arid4b-204ENSMUST00000110536 5783 ntTSL 5 BASIC17.42■□□□□ 0.38
Rnf40Q3U319 Hmces-202ENSMUST00000113606 1572 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Rnf40Q3U319 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Rnf40Q3U319 Smarcd1-201ENSMUST00000023759 3153 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Rnf40Q3U319 Cdkn2a-202ENSMUST00000107131 895 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Rnf40Q3U319 Rian-206ENSMUST00000182119 329 ntTSL 3 BASIC17.42■□□□□ 0.38
Rnf40Q3U319 Klf7-201ENSMUST00000055001 1477 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Rnf40Q3U319 Oas1b-201ENSMUST00000086377 1832 ntTSL 5 BASIC17.42■□□□□ 0.38
Rnf40Q3U319 Impdh1-205ENSMUST00000160878 2314 ntTSL 5 BASIC17.42■□□□□ 0.38
Rnf40Q3U319 Cfap206-202ENSMUST00000108136 1688 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Rnf40Q3U319 Errfi1-201ENSMUST00000030811 3043 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Rnf40Q3U319 Larp1b-206ENSMUST00000191872 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Rnf40Q3U319 Cdc27-202ENSMUST00000106961 1863 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Rnf40Q3U319 Ppm1e-201ENSMUST00000055438 6344 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Rnf40Q3U319 Sbk2-202ENSMUST00000182214 2236 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
Rnf40Q3U319 Zbtb4-201ENSMUST00000108638 2552 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Rnf40Q3U319 Zbtb11os1-201ENSMUST00000186480 1350 ntBASIC17.41■□□□□ 0.38
Rnf40Q3U319 Gprc5c-203ENSMUST00000122967 1709 ntTSL 5 BASIC17.41■□□□□ 0.38
Rnf40Q3U319 Pmpca-201ENSMUST00000076431 3135 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Rnf40Q3U319 Tmx4-203ENSMUST00000110120 2602 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Rnf40Q3U319 Nipsnap3b-201ENSMUST00000015391 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Rnf40Q3U319 Ptges3-202ENSMUST00000084771 1559 ntTSL 5 BASIC17.41■□□□□ 0.38
Rnf40Q3U319 Bend6-204ENSMUST00000129464 1750 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Rnf40Q3U319 Tia1-203ENSMUST00000095754 1789 ntAPPRIS ALT1 TSL 5 BASIC17.41■□□□□ 0.38
Rnf40Q3U319 Ruvbl2-205ENSMUST00000211214 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Rnf40Q3U319 Zdhhc12-202ENSMUST00000102865 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Rnf40Q3U319 Bola1-202ENSMUST00000107099 995 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
Rnf40Q3U319 Bola1-201ENSMUST00000016087 729 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Rnf40Q3U319 Bola1-203ENSMUST00000177442 692 ntAPPRIS P1 TSL 3 BASIC17.41■□□□□ 0.38
Rnf40Q3U319 Gm26833-201ENSMUST00000180899 440 ntBASIC17.41■□□□□ 0.38
Rnf40Q3U319 Mindy4-203ENSMUST00000204842 2211 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Rnf40Q3U319 Lrp6-201ENSMUST00000032322 9368 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Rnf40Q3U319 Taf15-201ENSMUST00000021018 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Rnf40Q3U319 Vmn1r17-204ENSMUST00000228294 2084 ntAPPRIS ALT2 BASIC17.41■□□□□ 0.38
Rnf40Q3U319 Sgpp1-202ENSMUST00000220285 3200 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Rnf40Q3U319 9430015G10Rik-208ENSMUST00000169550 2660 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
Rnf40Q3U319 Ube2d3-212ENSMUST00000197859 3833 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Rnf40Q3U319 Mbnl1-201ENSMUST00000099087 5655 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Rnf40Q3U319 Gm14026-201ENSMUST00000120625 1789 ntBASIC17.4■□□□□ 0.38
Rnf40Q3U319 Negr1-203ENSMUST00000106065 1953 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Rnf40Q3U319 Gm5577-201ENSMUST00000134600 1434 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Rnf40Q3U319 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
Rnf40Q3U319 Knstrn-202ENSMUST00000110842 925 ntAPPRIS ALT2 TSL 3 BASIC17.4■□□□□ 0.38
Rnf40Q3U319 Gm13401-201ENSMUST00000117074 291 ntBASIC17.4■□□□□ 0.38
Rnf40Q3U319 Gm11434-201ENSMUST00000122379 629 ntBASIC17.4■□□□□ 0.38
Rnf40Q3U319 Pkig-204ENSMUST00000126182 762 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
Rnf40Q3U319 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC17.4■□□□□ 0.38
Rnf40Q3U319 Fam96b-201ENSMUST00000093234 639 ntTSL 5 BASIC17.4■□□□□ 0.38
Rnf40Q3U319 Fignl2-202ENSMUST00000213610 4462 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
Rnf40Q3U319 Fhl1-201ENSMUST00000023854 2356 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Rnf40Q3U319 Zfp800-202ENSMUST00000115320 4311 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Rnf40Q3U319 Tll1-201ENSMUST00000066166 4767 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Rnf40Q3U319 Ppfia3-207ENSMUST00000211067 4565 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
Rnf40Q3U319 Gpc1-201ENSMUST00000045970 4176 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 25.5 ms