Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Tmem229a-201ENSMUST00000127247 5157 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
Col8a1Q00780 Trmt112-ps2-201ENSMUST00000117987 378 ntBASIC14.27□□□□□ -0.13
Col8a1Q00780 Gm15372-201ENSMUST00000120729 834 ntBASIC14.27□□□□□ -0.13
Col8a1Q00780 Ascl2-202ENSMUST00000121862 814 ntAPPRIS ALT2 BASIC14.27□□□□□ -0.13
Col8a1Q00780 Sssca1-203ENSMUST00000159693 705 ntTSL 3 BASIC14.27□□□□□ -0.13
Col8a1Q00780 Syngr2-206ENSMUST00000177131 935 ntAPPRIS ALT2 TSL 3 BASIC14.27□□□□□ -0.13
Col8a1Q00780 AC108846.1-201ENSMUST00000214531 513 ntBASIC14.27□□□□□ -0.13
Col8a1Q00780 Lce3b-201ENSMUST00000046234 562 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Col8a1Q00780 Slbp-202ENSMUST00000075670 1027 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Col8a1Q00780 Ankrd63-201ENSMUST00000104937 4861 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
Col8a1Q00780 Usp47-201ENSMUST00000106653 5540 ntAPPRIS P3 TSL 5 BASIC14.27□□□□□ -0.13
Col8a1Q00780 Pisd-201ENSMUST00000061895 2183 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
Col8a1Q00780 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC14.27□□□□□ -0.13
Col8a1Q00780 Synpo-201ENSMUST00000097566 5060 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
Col8a1Q00780 Slit1-201ENSMUST00000025993 5045 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Col8a1Q00780 Fbxo17-201ENSMUST00000032818 1958 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Col8a1Q00780 Ubfd1-201ENSMUST00000033158 4849 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Col8a1Q00780 Zfc3h1-201ENSMUST00000036044 6957 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Col8a1Q00780 Irf3-213ENSMUST00000209066 1712 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Col8a1Q00780 Rai1-201ENSMUST00000064190 7348 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col8a1Q00780 Rnf112-201ENSMUST00000054927 3086 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Col8a1Q00780 Galnt9-201ENSMUST00000040001 2883 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col8a1Q00780 Gm8909-203ENSMUST00000173353 1428 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Col8a1Q00780 Pla2g10-201ENSMUST00000023364 1423 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col8a1Q00780 Lifr-202ENSMUST00000164529 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col8a1Q00780 Gm45606-201ENSMUST00000209836 2795 ntBASIC14.26□□□□□ -0.13
Col8a1Q00780 Vsig10-201ENSMUST00000086464 2052 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Col8a1Q00780 Cdh2-201ENSMUST00000025166 4843 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col8a1Q00780 Eif6-202ENSMUST00000109638 1382 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Col8a1Q00780 Gm12359-203ENSMUST00000153181 680 ntTSL 3 BASIC14.26□□□□□ -0.13
Col8a1Q00780 Ctsg-201ENSMUST00000015583 1002 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col8a1Q00780 Banf1-202ENSMUST00000170010 742 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col8a1Q00780 Gm3764-206ENSMUST00000181356 1088 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Col8a1Q00780 Gm44202-201ENSMUST00000203549 532 ntTSL 3 BASIC14.26□□□□□ -0.13
Col8a1Q00780 Rpl18a-206ENSMUST00000212709 700 ntTSL 2 BASIC14.26□□□□□ -0.13
Col8a1Q00780 Cbr2-201ENSMUST00000026148 1110 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col8a1Q00780 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col8a1Q00780 Gm16054-201ENSMUST00000139469 1819 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Col8a1Q00780 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col8a1Q00780 Fam126a-202ENSMUST00000101513 1679 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Col8a1Q00780 Hmg20b-201ENSMUST00000020454 1621 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col8a1Q00780 Emd-201ENSMUST00000002029 1595 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col8a1Q00780 Tial1-201ENSMUST00000033135 1580 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col8a1Q00780 Ikzf1-203ENSMUST00000065433 4697 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Col8a1Q00780 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC14.25□□□□□ -0.13
Col8a1Q00780 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col8a1Q00780 Gm45141-201ENSMUST00000206502 1888 ntBASIC14.25□□□□□ -0.13
Col8a1Q00780 Fam171b-201ENSMUST00000051454 5614 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col8a1Q00780 AC131586.3-201ENSMUST00000228355 1367 ntBASIC14.25□□□□□ -0.13
Col8a1Q00780 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col8a1Q00780 Ssc4d-204ENSMUST00000111153 2745 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
Col8a1Q00780 Gm9885-202ENSMUST00000186234 2209 ntBASIC14.25□□□□□ -0.13
Col8a1Q00780 Cxxc1-201ENSMUST00000025444 2618 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col8a1Q00780 Higd1b-202ENSMUST00000107072 497 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
Col8a1Q00780 Higd1b-203ENSMUST00000107073 530 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
Col8a1Q00780 Chchd2-ps-201ENSMUST00000117487 462 ntBASIC14.25□□□□□ -0.13
Col8a1Q00780 Gm11336-201ENSMUST00000118168 334 ntBASIC14.25□□□□□ -0.13
Col8a1Q00780 Gm12350-201ENSMUST00000121208 462 ntBASIC14.25□□□□□ -0.13
Col8a1Q00780 Cetn4-205ENSMUST00000140956 2981 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Col8a1Q00780 2810030D12Rik-203ENSMUST00000190461 1039 ntBASIC14.25□□□□□ -0.13
Col8a1Q00780 Higd1b-201ENSMUST00000021302 735 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col8a1Q00780 Atp6v0b-201ENSMUST00000036380 1000 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col8a1Q00780 Prm2-201ENSMUST00000037996 621 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col8a1Q00780 1110038F14Rik-201ENSMUST00000071792 1010 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col8a1Q00780 Isg15-201ENSMUST00000085425 756 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col8a1Q00780 Tmem128-201ENSMUST00000087511 1291 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col8a1Q00780 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col8a1Q00780 Kcna6-204ENSMUST00000185333 5836 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col8a1Q00780 Eps8-201ENSMUST00000058210 4567 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col8a1Q00780 Pgam5-202ENSMUST00000112505 2098 ntAPPRIS ALT1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col8a1Q00780 Taok3-203ENSMUST00000111978 4467 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col8a1Q00780 Nhs-201ENSMUST00000081569 4881 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col8a1Q00780 Vkorc1l1-203ENSMUST00000201855 4809 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Col8a1Q00780 Gm26884-201ENSMUST00000181207 3074 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Col8a1Q00780 Ndufv2-203ENSMUST00000143987 1540 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col8a1Q00780 Iqck-201ENSMUST00000098087 1503 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Col8a1Q00780 Klhl25-201ENSMUST00000092073 3385 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col8a1Q00780 Btbd11-203ENSMUST00000105307 5788 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col8a1Q00780 Rbm11-201ENSMUST00000046378 1400 ntAPPRIS P2 TSL 5 BASIC14.24□□□□□ -0.13
Col8a1Q00780 Cadps2-212ENSMUST00000163871 4969 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
Col8a1Q00780 Ripor2-205ENSMUST00000110384 5608 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col8a1Q00780 Kif7-202ENSMUST00000178048 4524 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col8a1Q00780 Olig2-201ENSMUST00000035608 2437 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col8a1Q00780 Ap1s1-201ENSMUST00000111080 1353 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col8a1Q00780 Igf2-205ENSMUST00000121128 4722 ntTSL 2 BASIC14.24□□□□□ -0.13
Col8a1Q00780 Iqcd-202ENSMUST00000094391 1673 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col8a1Q00780 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col8a1Q00780 Col11a2-202ENSMUST00000114252 5620 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
Col8a1Q00780 Ubtf-204ENSMUST00000107117 3258 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
Col8a1Q00780 Cnn2-202ENSMUST00000105374 926 ntTSL 5 BASIC14.24□□□□□ -0.13
Col8a1Q00780 Sytl3-204ENSMUST00000159880 1296 ntTSL 5 BASIC14.24□□□□□ -0.13
Col8a1Q00780 Fbxo6-208ENSMUST00000168503 1240 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
Col8a1Q00780 Gm19553-201ENSMUST00000175723 494 ntTSL 5 BASIC14.24□□□□□ -0.13
Col8a1Q00780 1700025N23Rik-201ENSMUST00000186189 915 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Col8a1Q00780 Tm4sf5-201ENSMUST00000019063 1000 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col8a1Q00780 Gm10576-201ENSMUST00000191927 825 ntBASIC14.24□□□□□ -0.13
Col8a1Q00780 Gm38119-201ENSMUST00000192027 755 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
Col8a1Q00780 Rbpms-202ENSMUST00000033995 1039 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col8a1Q00780 Ndufb10-201ENSMUST00000045602 732 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col8a1Q00780 Nudt16l1-201ENSMUST00000050881 1269 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 29.9 ms