Protein–RNA interactions for Protein: P48381

Rfx3, Transcription factor RFX3, mousemouse

Predictions only

Length 749 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx3P48381 Sema6c-214ENSMUST00000202315 2843 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
Rfx3P48381 Tmprss5-201ENSMUST00000070390 2047 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Rfx3P48381 Ebf1-203ENSMUST00000109268 2864 ntAPPRIS ALT1 TSL 5 BASIC15.17■□□□□ 0.02
Rfx3P48381 Prps1l3-201ENSMUST00000139049 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Rfx3P48381 Mms22l-202ENSMUST00000108222 4478 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
Rfx3P48381 Slc16a3-202ENSMUST00000100130 2386 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Rfx3P48381 Snph-203ENSMUST00000109875 4910 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
Rfx3P48381 Mettl4-ps1-202ENSMUST00000130218 1323 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Rfx3P48381 Wdr1-201ENSMUST00000005234 3089 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Rfx3P48381 6330411D24Rik-201ENSMUST00000211105 1568 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Rfx3P48381 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Rfx3P48381 Grb7-201ENSMUST00000019456 2397 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Rfx3P48381 Cxcl14-201ENSMUST00000021970 1827 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Rfx3P48381 E030044B06Rik-201ENSMUST00000181195 1266 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Rfx3P48381 Igsf8-201ENSMUST00000039506 2278 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Rfx3P48381 Prelid3a-201ENSMUST00000025411 2167 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Rfx3P48381 Mycl-201ENSMUST00000030407 3501 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Rfx3P48381 2810425M01Rik-201ENSMUST00000180790 1850 ntTSL 5 BASIC15.16■□□□□ 0.02
Rfx3P48381 Anapc2-201ENSMUST00000028341 3004 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Rfx3P48381 Sh2b1-202ENSMUST00000205340 3366 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Rfx3P48381 Ptgis-201ENSMUST00000018113 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Rfx3P48381 Rb1-201ENSMUST00000022701 4656 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Rfx3P48381 Cdv3-202ENSMUST00000072249 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Rfx3P48381 Nr1h2-204ENSMUST00000107912 1839 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
Rfx3P48381 Cend1-202ENSMUST00000124444 1733 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Rfx3P48381 Ror1-201ENSMUST00000039630 5762 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Rfx3P48381 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Rfx3P48381 Kcnh2-202ENSMUST00000115098 3193 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Rfx3P48381 CT010444.2-201ENSMUST00000217877 1629 ntBASIC15.15■□□□□ 0.02
Rfx3P48381 Sphk1-206ENSMUST00000106388 1891 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
Rfx3P48381 Gm10698-201ENSMUST00000182663 604 ntBASIC15.15■□□□□ 0.02
Rfx3P48381 Uqcr11-201ENSMUST00000020372 445 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Rfx3P48381 Mdga1-208ENSMUST00000171691 8339 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
Rfx3P48381 Cdh24-201ENSMUST00000067784 3489 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
Rfx3P48381 F830208F22Rik-202ENSMUST00000143732 2891 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Rfx3P48381 Trip10-201ENSMUST00000019631 2224 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Rfx3P48381 Adam23-201ENSMUST00000087374 6426 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Rfx3P48381 Slain1-201ENSMUST00000069443 2863 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Rfx3P48381 Nes-203ENSMUST00000160694 5958 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Rfx3P48381 Mipep-201ENSMUST00000063562 3015 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Rfx3P48381 Cpsf4-207ENSMUST00000162244 1387 ntAPPRIS P4 TSL 1 (best) BASIC15.14■□□□□ 0.01
Rfx3P48381 Shh-201ENSMUST00000002708 2847 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Rfx3P48381 AC154231.1-201ENSMUST00000220564 2175 ntBASIC15.14■□□□□ 0.01
Rfx3P48381 Zfx-204ENSMUST00000113927 6933 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Rfx3P48381 Spata6-201ENSMUST00000038868 2466 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Rfx3P48381 Htr3a-201ENSMUST00000003826 2082 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Rfx3P48381 Tmc6-202ENSMUST00000103025 1279 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Rfx3P48381 Atp5g1-203ENSMUST00000107686 691 ntAPPRIS P1 TSL 3 BASIC15.14■□□□□ 0.01
Rfx3P48381 Igflr1-202ENSMUST00000172251 1224 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Rfx3P48381 Sox15-201ENSMUST00000047373 861 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Rfx3P48381 Slmap-203ENSMUST00000102956 5476 ntAPPRIS P3 TSL 5 BASIC15.14■□□□□ 0.01
Rfx3P48381 Ephb4-203ENSMUST00000111055 4296 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Rfx3P48381 Sipa1l1-202ENSMUST00000166429 8215 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
Rfx3P48381 Vangl2-201ENSMUST00000027837 5698 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Rfx3P48381 Rabep1-201ENSMUST00000076270 5408 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Rfx3P48381 Gm16835-201ENSMUST00000140488 2809 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Rfx3P48381 Sharpin-201ENSMUST00000023211 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Rfx3P48381 Pde8b-208ENSMUST00000162292 4235 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Rfx3P48381 Taz-201ENSMUST00000069722 1851 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
Rfx3P48381 Prkcb-201ENSMUST00000064921 2557 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Rfx3P48381 Psmd4-202ENSMUST00000107237 1332 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
Rfx3P48381 BC029722-201ENSMUST00000124586 1615 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Rfx3P48381 Fubp1-205ENSMUST00000196695 2374 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Rfx3P48381 Nptx2-201ENSMUST00000071782 2536 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Rfx3P48381 Gm11620-201ENSMUST00000118770 1845 ntBASIC15.13■□□□□ 0.01
Rfx3P48381 Rgs7-203ENSMUST00000192227 2113 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
Rfx3P48381 Was-201ENSMUST00000033505 2114 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Rfx3P48381 Icam2-201ENSMUST00000001055 1282 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Rfx3P48381 Shank1-203ENSMUST00000107938 9826 ntAPPRIS P2 TSL 5 BASIC15.13■□□□□ 0.01
Rfx3P48381 Rbbp7-202ENSMUST00000112326 1430 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Rfx3P48381 Zfp467-209ENSMUST00000114566 543 ntTSL 3 BASIC15.13■□□□□ 0.01
Rfx3P48381 Fmr1-205ENSMUST00000114656 4257 ntTSL 5 BASIC15.13■□□□□ 0.01
Rfx3P48381 Gm13168-201ENSMUST00000121771 632 ntBASIC15.13■□□□□ 0.01
Rfx3P48381 Smim1-212ENSMUST00000146543 839 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Rfx3P48381 Creb1-207ENSMUST00000187811 1255 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Rfx3P48381 Ubap1-202ENSMUST00000108060 2514 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Rfx3P48381 Kctd9-205ENSMUST00000152243 2528 ntTSL 2 BASIC15.13■□□□□ 0.01
Rfx3P48381 Heyl-201ENSMUST00000040821 4537 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Rfx3P48381 Synpo-206ENSMUST00000130360 5159 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Rfx3P48381 Fgfr1-214ENSMUST00000178276 4741 ntTSL 5 BASIC15.13■□□□□ 0.01
Rfx3P48381 Nes-201ENSMUST00000090973 6126 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Rfx3P48381 Lrp12-202ENSMUST00000110305 4244 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Rfx3P48381 Fbxo7-203ENSMUST00000120344 1655 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Rfx3P48381 Cnksr1-201ENSMUST00000030645 2468 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Rfx3P48381 Dmgdh-201ENSMUST00000048001 2992 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Rfx3P48381 A330009N23Rik-201ENSMUST00000180639 1392 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Rfx3P48381 Hps6-201ENSMUST00000099393 2696 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
Rfx3P48381 Agbl5-208ENSMUST00000201168 3199 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
Rfx3P48381 Kcnk4-201ENSMUST00000025908 1715 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Rfx3P48381 Nsun5-201ENSMUST00000000940 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Rfx3P48381 Samd8-201ENSMUST00000022292 1574 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Rfx3P48381 Chn1-203ENSMUST00000112024 4050 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Rfx3P48381 Chn1-210ENSMUST00000180045 4050 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Rfx3P48381 Gm13816-201ENSMUST00000152230 715 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Rfx3P48381 Gm24841-201ENSMUST00000158676 357 ntBASIC15.12■□□□□ 0.01
Rfx3P48381 Aprt-204ENSMUST00000212093 723 ntTSL 2 BASIC15.12■□□□□ 0.01
Rfx3P48381 Gm26917-202ENSMUST00000192833 3329 ntBASIC15.12■□□□□ 0.01
Rfx3P48381 Ggnbp2-201ENSMUST00000018547 2478 ntTSL 5 BASIC15.12■□□□□ 0.01
Rfx3P48381 Nsmce3-201ENSMUST00000094331 5946 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
Rfx3P48381 Tm7sf2-202ENSMUST00000113543 1498 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 21.9 ms