Protein–RNA interactions for Protein: O89116

Vti1a, Vesicle transport through interaction with t-SNAREs homolog 1A, mousemouse

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vti1aO89116 Cyp4f41-ps-201ENSMUST00000126790 1077 ntBASIC18.08■□□□□ 0.48
Vti1aO89116 Lamtor5-201ENSMUST00000145735 881 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Vti1aO89116 4930505N22Rik-201ENSMUST00000181820 945 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Vti1aO89116 Sox6os-201ENSMUST00000032900 420 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Vti1aO89116 Gm7461-201ENSMUST00000058918 827 ntBASIC18.08■□□□□ 0.48
Vti1aO89116 Manbal-201ENSMUST00000081202 1107 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Vti1aO89116 Fbxo36-201ENSMUST00000097672 901 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Vti1aO89116 Fam57b-207ENSMUST00000207020 1777 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Vti1aO89116 Tia1-203ENSMUST00000095754 1789 ntAPPRIS ALT1 TSL 5 BASIC18.08■□□□□ 0.48
Vti1aO89116 Ccdc105-201ENSMUST00000105383 1714 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Vti1aO89116 Fbrsl1-206ENSMUST00000198834 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
Vti1aO89116 Fbxl3-201ENSMUST00000022720 4309 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Vti1aO89116 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Vti1aO89116 Hoxc9-201ENSMUST00000001706 2374 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Vti1aO89116 Il4i1-202ENSMUST00000118125 2275 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
Vti1aO89116 Puf60-201ENSMUST00000002599 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Vti1aO89116 Scly-201ENSMUST00000027532 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Vti1aO89116 Rmdn3-201ENSMUST00000094695 2249 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Vti1aO89116 Gm15635-204ENSMUST00000208024 2539 ntBASIC18.07■□□□□ 0.48
Vti1aO89116 Ddx19a-201ENSMUST00000040416 2547 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Vti1aO89116 Prps1l3-201ENSMUST00000139049 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Vti1aO89116 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC18.07■□□□□ 0.48
Vti1aO89116 Ttc6-203ENSMUST00000172939 5782 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
Vti1aO89116 Crk-203ENSMUST00000108425 4290 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Vti1aO89116 Atp5g1-202ENSMUST00000107684 596 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Vti1aO89116 9130019P16Rik-201ENSMUST00000135612 1019 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Vti1aO89116 Flg-207ENSMUST00000180293 768 ntAPPRIS ALT2 BASIC18.07■□□□□ 0.48
Vti1aO89116 Gm18669-201ENSMUST00000216049 778 ntBASIC18.07■□□□□ 0.48
Vti1aO89116 Snhg10-202ENSMUST00000222812 527 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Vti1aO89116 Cldn22-201ENSMUST00000038693 995 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
Vti1aO89116 Mfsd13a-202ENSMUST00000128041 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Vti1aO89116 Gpd1-203ENSMUST00000162194 1515 ntTSL 5 BASIC18.07■□□□□ 0.48
Vti1aO89116 D1Ertd622e-204ENSMUST00000153115 3495 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Vti1aO89116 Gna11-201ENSMUST00000043604 3414 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Vti1aO89116 Wdr90-205ENSMUST00000176923 5666 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
Vti1aO89116 Wdr26-207ENSMUST00000162819 6619 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Vti1aO89116 Tmem241-205ENSMUST00000209859 1426 ntAPPRIS P4 TSL 1 (best) BASIC18.06■□□□□ 0.48
Vti1aO89116 Fam126a-201ENSMUST00000030849 5659 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Vti1aO89116 Ptprj-204ENSMUST00000168621 7634 ntAPPRIS P4 TSL 1 (best) BASIC18.06■□□□□ 0.48
Vti1aO89116 AC125311.2-201ENSMUST00000227477 1940 ntBASIC18.06■□□□□ 0.48
Vti1aO89116 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Vti1aO89116 Ngrn-201ENSMUST00000117989 1317 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Vti1aO89116 Hmg20b-213ENSMUST00000167481 1321 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
Vti1aO89116 Gm20604-201ENSMUST00000174651 2795 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
Vti1aO89116 Arhgap39-202ENSMUST00000077821 4494 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
Vti1aO89116 Fndc11-202ENSMUST00000108835 1154 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
Vti1aO89116 Ppp1r2-202ENSMUST00000115233 958 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Vti1aO89116 Srpx-202ENSMUST00000115543 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Vti1aO89116 Rbm4-203ENSMUST00000178615 1018 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Vti1aO89116 Gm26620-201ENSMUST00000180542 817 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
Vti1aO89116 Iscu-201ENSMUST00000026937 957 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Vti1aO89116 Sept8-203ENSMUST00000120878 1806 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
Vti1aO89116 Vangl2-203ENSMUST00000111264 2349 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Vti1aO89116 Serac1-201ENSMUST00000024570 2033 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
Vti1aO89116 Tcf7l2-203ENSMUST00000111646 2839 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Vti1aO89116 F12-201ENSMUST00000021948 1960 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Vti1aO89116 Gm17055-201ENSMUST00000166951 2232 ntTSL 5 BASIC18.06■□□□□ 0.48
Vti1aO89116 Trp73-203ENSMUST00000105643 1916 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
Vti1aO89116 Pdgfa-203ENSMUST00000110896 1363 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
Vti1aO89116 Arhgef25-212ENSMUST00000222006 1896 ntTSL 5 BASIC18.05■□□□□ 0.48
Vti1aO89116 Tdrd12-201ENSMUST00000032701 1620 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Vti1aO89116 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Vti1aO89116 Acot7-206ENSMUST00000167926 1505 ntAPPRIS P4 TSL 1 (best) BASIC18.05■□□□□ 0.48
Vti1aO89116 Rab11b-203ENSMUST00000173860 1544 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Vti1aO89116 Gm43338-201ENSMUST00000198617 2223 ntBASIC18.05■□□□□ 0.48
Vti1aO89116 Lhfpl4-201ENSMUST00000162280 4762 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Vti1aO89116 Rybp-201ENSMUST00000101118 4503 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Vti1aO89116 Gm34933-201ENSMUST00000203245 1067 ntTSL 5 BASIC18.05■□□□□ 0.48
Vti1aO89116 Pafah1b3-201ENSMUST00000005583 901 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Vti1aO89116 S100a16-202ENSMUST00000098911 1127 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Vti1aO89116 Adrb2-201ENSMUST00000053640 2143 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
Vti1aO89116 Eif4enif1-203ENSMUST00000110049 3614 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Vti1aO89116 Gmcl1-201ENSMUST00000001185 2949 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Vti1aO89116 Pde5a-204ENSMUST00000200389 7603 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
Vti1aO89116 Bmp8a-201ENSMUST00000040496 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Vti1aO89116 2210016L21Rik-201ENSMUST00000031538 2607 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Vti1aO89116 Adcy5-201ENSMUST00000114913 7007 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Vti1aO89116 Fzd5-201ENSMUST00000063982 6915 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Vti1aO89116 Fmr1-201ENSMUST00000088546 4409 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Vti1aO89116 Ccdc88a-201ENSMUST00000040182 9376 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
Vti1aO89116 Impdh1-210ENSMUST00000162739 2471 ntTSL 5 BASIC18.04■□□□□ 0.48
Vti1aO89116 Rps27a-202ENSMUST00000102845 791 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Vti1aO89116 Mir770-201ENSMUST00000103252 94 ntBASIC18.04■□□□□ 0.48
Vti1aO89116 Crct1-202ENSMUST00000107301 460 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
Vti1aO89116 Upk3a-201ENSMUST00000023070 1106 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Vti1aO89116 4933427E11Rik-201ENSMUST00000056711 1214 ntBASIC18.04■□□□□ 0.48
Vti1aO89116 Cmtm7-202ENSMUST00000084867 874 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Vti1aO89116 Sh2b2-203ENSMUST00000196397 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Vti1aO89116 Rtkn-201ENSMUST00000065512 2191 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Vti1aO89116 Ing1-202ENSMUST00000209565 1971 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Vti1aO89116 Ppm1b-202ENSMUST00000112304 3262 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
Vti1aO89116 Fxr1-201ENSMUST00000001620 2459 ntTSL 5 BASIC18.04■□□□□ 0.48
Vti1aO89116 Lrrc47-201ENSMUST00000030894 3395 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Vti1aO89116 Tyk2-205ENSMUST00000214864 1662 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Vti1aO89116 Eva1c-201ENSMUST00000037539 1698 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Vti1aO89116 Gm20517-202ENSMUST00000132397 4807 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Vti1aO89116 Pcdh7-201ENSMUST00000068110 5611 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
Vti1aO89116 Osgin2-201ENSMUST00000037198 2658 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Vti1aO89116 Bicc1-203ENSMUST00000143791 5431 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Vti1aO89116 Mapkapk3-201ENSMUST00000035194 2816 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 23.2 ms