Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 MUM1L1-202ENST00000357175 4173 ntAPPRIS P1 TSL 2 BASIC5.12□□□□□ -1.59
LHX3Q9UBR4 RALGAPB-202ENST00000397040 8435 ntAPPRIS P3 TSL 1 (best) BASIC5.12□□□□□ -1.59
LHX3Q9UBR4 SMC2-202ENST00000374787 4266 ntAPPRIS P1 TSL 2 BASIC5.12□□□□□ -1.59
LHX3Q9UBR4 CFL2-201ENST00000298159 6747 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
LHX3Q9UBR4 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC5.12□□□□□ -1.59
LHX3Q9UBR4 RN7SKP104-201ENST00000362605 328 ntBASIC5.12□□□□□ -1.59
LHX3Q9UBR4 ARSD-AS1-201ENST00000414053 816 ntTSL 2 BASIC5.12□□□□□ -1.59
LHX3Q9UBR4 CYP3A43-205ENST00000415413 990 ntTSL 5 BASIC5.12□□□□□ -1.59
LHX3Q9UBR4 AL591468.1-201ENST00000417932 573 ntTSL 3 BASIC5.12□□□□□ -1.59
LHX3Q9UBR4 AL354956.1-201ENST00000424487 467 ntTSL 5 BASIC5.12□□□□□ -1.59
LHX3Q9UBR4 COX6CP13-201ENST00000428703 226 ntBASIC5.12□□□□□ -1.59
LHX3Q9UBR4 AC004824.1-201ENST00000439577 311 ntTSL 5 BASIC5.12□□□□□ -1.59
LHX3Q9UBR4 RPS29P9-201ENST00000440360 171 ntBASIC5.12□□□□□ -1.59
LHX3Q9UBR4 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC5.12□□□□□ -1.59
LHX3Q9UBR4 FAM237A-201ENST00000441223 773 ntAPPRIS P1 TSL 2 BASIC5.12□□□□□ -1.59
LHX3Q9UBR4 TCEA1P1-201ENST00000449716 880 ntBASIC5.12□□□□□ -1.59
LHX3Q9UBR4 EIF4EBP2P1-201ENST00000450009 343 ntBASIC5.12□□□□□ -1.59
LHX3Q9UBR4 AC008410.1-201ENST00000483777 339 ntBASIC5.12□□□□□ -1.59
LHX3Q9UBR4 NADK2-AS1-201ENST00000501794 720 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
LHX3Q9UBR4 NDUFA5P12-201ENST00000503796 343 ntBASIC5.12□□□□□ -1.59
LHX3Q9UBR4 AC093801.1-201ENST00000504017 307 ntTSL 2 BASIC5.12□□□□□ -1.59
LHX3Q9UBR4 AC012339.2-201ENST00000523996 453 ntBASIC5.12□□□□□ -1.59
LHX3Q9UBR4 SDHAF2-208ENST00000543265 438 ntTSL 5 BASIC5.12□□□□□ -1.59
LHX3Q9UBR4 HAGLR-211ENST00000549329 609 ntTSL 4 BASIC5.12□□□□□ -1.59
LHX3Q9UBR4 WDR61-205ENST00000558459 884 ntTSL 3 BASIC5.12□□□□□ -1.59
LHX3Q9UBR4 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC5.12□□□□□ -1.59
LHX3Q9UBR4 AC027216.1-201ENST00000577726 685 ntBASIC5.12□□□□□ -1.59
LHX3Q9UBR4 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC5.12□□□□□ -1.59
LHX3Q9UBR4 MYLK-221ENST00000583087 678 ntTSL 4 BASIC5.12□□□□□ -1.59
LHX3Q9UBR4 AC133644.2-201ENST00000608142 540 ntBASIC5.12□□□□□ -1.59
LHX3Q9UBR4 OR8H1-202ENST00000610894 927 ntAPPRIS ALT1 BASIC5.12□□□□□ -1.59
LHX3Q9UBR4 AC090510.2-201ENST00000617465 629 ntBASIC5.12□□□□□ -1.59
LHX3Q9UBR4 AL391597.1-201ENST00000618707 694 ntBASIC5.12□□□□□ -1.59
LHX3Q9UBR4 AL442125.2-201ENST00000619338 418 ntTSL 5 BASIC5.12□□□□□ -1.59
LHX3Q9UBR4 AC002384.2-201ENST00000636036 790 ntTSL 3 BASIC5.12□□□□□ -1.59
LHX3Q9UBR4 TRIM51GP-201ENST00000534741 1350 ntBASIC5.12□□□□□ -1.59
LHX3Q9UBR4 MTCO1P8-201ENST00000416914 1523 ntBASIC5.12□□□□□ -1.59
LHX3Q9UBR4 CACNB4-245ENST00000637284 2423 ntTSL 5 BASIC5.12□□□□□ -1.59
LHX3Q9UBR4 EFCAB5-201ENST00000394835 5132 ntAPPRIS P2 TSL 1 (best) BASIC5.11□□□□□ -1.59
LHX3Q9UBR4 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC5.11□□□□□ -1.59
LHX3Q9UBR4 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
LHX3Q9UBR4 AC007996.1-201ENST00000620414 2821 ntBASIC5.11□□□□□ -1.59
LHX3Q9UBR4 PTPRD-202ENST00000356435 9472 ntAPPRIS P1 TSL 5 BASIC5.11□□□□□ -1.59
LHX3Q9UBR4 TTBK2-201ENST00000267890 10905 ntAPPRIS P2 TSL 5 BASIC5.11□□□□□ -1.59
LHX3Q9UBR4 DCTN4-201ENST00000424236 4054 ntTSL 2 BASIC5.11□□□□□ -1.59
LHX3Q9UBR4 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
LHX3Q9UBR4 IKZF3-202ENST00000346243 1296 ntTSL 5 BASIC5.11□□□□□ -1.59
LHX3Q9UBR4 KIF16B-202ENST00000355755 606 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
LHX3Q9UBR4 RNU4-23P-201ENST00000362839 140 ntBASIC5.11□□□□□ -1.59
LHX3Q9UBR4 SNORA5.1-201ENST00000384275 131 ntBASIC5.11□□□□□ -1.59
LHX3Q9UBR4 RNU6-891P-201ENST00000384280 111 ntBASIC5.11□□□□□ -1.59
LHX3Q9UBR4 IGLJ6-201ENST00000390328 70 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
LHX3Q9UBR4 ATP5HP3-201ENST00000396994 486 ntBASIC5.11□□□□□ -1.59
LHX3Q9UBR4 DEFB113-201ENST00000398718 249 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
LHX3Q9UBR4 AL109941.1-201ENST00000401925 229 ntBASIC5.11□□□□□ -1.59
LHX3Q9UBR4 AL589647.1-201ENST00000402485 466 ntBASIC5.11□□□□□ -1.59
LHX3Q9UBR4 AC009502.1-203ENST00000416861 496 ntTSL 2 BASIC5.11□□□□□ -1.59
LHX3Q9UBR4 AC234781.4-201ENST00000419384 244 ntBASIC5.11□□□□□ -1.59
LHX3Q9UBR4 OR5K2-201ENST00000427338 1060 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
LHX3Q9UBR4 MTCO1P51-201ENST00000427672 1060 ntBASIC5.11□□□□□ -1.59
LHX3Q9UBR4 AL139819.1-201ENST00000429420 471 ntTSL 3 BASIC5.11□□□□□ -1.59
LHX3Q9UBR4 LINC02532-206ENST00000433965 570 ntTSL 2 BASIC5.11□□□□□ -1.59
LHX3Q9UBR4 IKZF3-212ENST00000439016 1246 ntTSL 5 BASIC5.11□□□□□ -1.59
LHX3Q9UBR4 OR7E125P-201ENST00000443450 846 ntBASIC5.11□□□□□ -1.59
LHX3Q9UBR4 Z99916.1-201ENST00000454253 482 ntTSL 3 BASIC5.11□□□□□ -1.59
LHX3Q9UBR4 AL356390.1-201ENST00000455684 397 ntBASIC5.11□□□□□ -1.59
LHX3Q9UBR4 RNU6-775P-201ENST00000459318 96 ntBASIC5.11□□□□□ -1.59
LHX3Q9UBR4 RN7SL441P-201ENST00000492388 296 ntBASIC5.11□□□□□ -1.59
LHX3Q9UBR4 OR52A4P-203ENST00000498233 1014 ntBASIC5.11□□□□□ -1.59
LHX3Q9UBR4 RPL37-204ENST00000508493 553 ntAPPRIS ALT1 TSL 1 (best) BASIC5.11□□□□□ -1.59
LHX3Q9UBR4 LINC02382-201ENST00000515840 614 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
LHX3Q9UBR4 RNU6-551P-201ENST00000516661 103 ntBASIC5.11□□□□□ -1.59
LHX3Q9UBR4 TBCA-207ENST00000520039 157 ntTSL 3 BASIC5.11□□□□□ -1.59
LHX3Q9UBR4 AC079296.1-202ENST00000521394 960 ntTSL 4 BASIC5.11□□□□□ -1.59
LHX3Q9UBR4 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC5.11□□□□□ -1.59
LHX3Q9UBR4 AL512310.9-201ENST00000553311 948 ntBASIC5.11□□□□□ -1.59
LHX3Q9UBR4 NMNAT1P1-201ENST00000554095 876 ntBASIC5.11□□□□□ -1.59
LHX3Q9UBR4 AC020659.1-204ENST00000562920 400 ntTSL 3 BASIC5.11□□□□□ -1.59
LHX3Q9UBR4 AC007014.1-201ENST00000572828 610 ntTSL 3 BASIC5.11□□□□□ -1.59
LHX3Q9UBR4 MTATP6P25-201ENST00000574491 261 ntBASIC5.11□□□□□ -1.59
LHX3Q9UBR4 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC5.11□□□□□ -1.59
LHX3Q9UBR4 CSNK1G3-210ENST00000521364 2580 ntAPPRIS ALT2 TSL 2 BASIC5.11□□□□□ -1.59
LHX3Q9UBR4 AL450345.1-202ENST00000605741 3881 ntBASIC5.11□□□□□ -1.59
LHX3Q9UBR4 ZNF410-211ENST00000555044 2601 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
LHX3Q9UBR4 WAC-209ENST00000428935 1320 ntTSL 2 BASIC5.11□□□□□ -1.59
LHX3Q9UBR4 AC022417.1-201ENST00000624768 1303 ntBASIC5.11□□□□□ -1.59
LHX3Q9UBR4 OR7A5-201ENST00000322301 4216 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
LHX3Q9UBR4 SAMD13-201ENST00000370668 1403 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
LHX3Q9UBR4 MMAA-205ENST00000541599 1437 ntTSL 5 BASIC5.11□□□□□ -1.59
LHX3Q9UBR4 ZCCHC8-201ENST00000536306 2904 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
LHX3Q9UBR4 TRPC4-203ENST00000358477 2955 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
LHX3Q9UBR4 AL157938.3-201ENST00000502188 3084 ntTSL 4 BASIC5.11□□□□□ -1.59
LHX3Q9UBR4 PIAS2-204ENST00000585916 11075 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
LHX3Q9UBR4 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC5.11□□□□□ -1.59
LHX3Q9UBR4 GART-205ENST00000381839 3469 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
LHX3Q9UBR4 AC008505.1-203ENST00000637345 1766 ntTSL 5 BASIC5.11□□□□□ -1.59
LHX3Q9UBR4 PROS2P-201ENST00000474651 1951 ntBASIC5.11□□□□□ -1.59
LHX3Q9UBR4 PRTG-201ENST00000389286 11967 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
LHX3Q9UBR4 CTSV-203ENST00000538255 4322 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
LHX3Q9UBR4 STXBP4-202ENST00000398391 2160 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 72 ms