Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC006262.3-201ENST00000597337 258 ntTSL 3 BASIC7.14□□□□□ -1.27
CCDC39Q9UFE4 AC243960.3-202ENST00000599770 594 ntTSL 4 BASIC7.14□□□□□ -1.27
CCDC39Q9UFE4 ZNF814-214ENST00000600634 461 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
CCDC39Q9UFE4 AC022001.1-201ENST00000605193 268 ntBASIC7.14□□□□□ -1.27
CCDC39Q9UFE4 SNORA74.4-201ENST00000607595 199 ntBASIC7.14□□□□□ -1.27
CCDC39Q9UFE4 AC018690.1-201ENST00000608144 626 ntBASIC7.14□□□□□ -1.27
CCDC39Q9UFE4 AC018628.1-201ENST00000624147 3819 ntBASIC7.14□□□□□ -1.27
CCDC39Q9UFE4 MTND1P37-201ENST00000636562 264 ntBASIC7.14□□□□□ -1.27
CCDC39Q9UFE4 OR52N4-202ENST00000641350 1276 ntAPPRIS P1 BASIC7.14□□□□□ -1.27
CCDC39Q9UFE4 ANKRD31-203ENST00000506364 6207 ntAPPRIS ALT2 TSL 5 BASIC7.14□□□□□ -1.27
CCDC39Q9UFE4 ADGRG2-203ENST00000356606 4630 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
CCDC39Q9UFE4 OR10G4-202ENST00000641521 3623 ntAPPRIS P1 BASIC7.14□□□□□ -1.27
CCDC39Q9UFE4 ATF7IP2-201ENST00000324570 3396 ntTSL 5 BASIC7.14□□□□□ -1.27
CCDC39Q9UFE4 FASTKD1-204ENST00000453153 2967 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
CCDC39Q9UFE4 LINC01153-201ENST00000429809 2864 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
CCDC39Q9UFE4 C4orf36-203ENST00000473559 2306 ntAPPRIS P1 TSL 2 BASIC7.13□□□□□ -1.27
CCDC39Q9UFE4 LINC01602-201ENST00000522992 2109 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
CCDC39Q9UFE4 PIGA-216ENST00000637296 2113 ntTSL 5 BASIC7.13□□□□□ -1.27
CCDC39Q9UFE4 NLGN1-202ENST00000401917 1827 ntTSL 5 BASIC7.13□□□□□ -1.27
CCDC39Q9UFE4 DECR1-215ENST00000522161 1766 ntAPPRIS ALT2 TSL 2 BASIC7.13□□□□□ -1.27
CCDC39Q9UFE4 LMO3-225ENST00000541295 3498 ntTSL 2 BASIC7.13□□□□□ -1.27
CCDC39Q9UFE4 CSNK1G1-204ENST00000606793 1658 ntTSL 5 BASIC7.13□□□□□ -1.27
CCDC39Q9UFE4 HELZ-207ENST00000580168 6279 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
CCDC39Q9UFE4 PNISR-202ENST00000438806 3142 ntAPPRIS P1 TSL 2 BASIC7.13□□□□□ -1.27
CCDC39Q9UFE4 GABRA2-206ENST00000507460 5812 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
CCDC39Q9UFE4 CLEC12A-203ENST00000355690 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC7.13□□□□□ -1.27
CCDC39Q9UFE4 CHN1-204ENST00000409597 1445 ntTSL 3 BASIC7.13□□□□□ -1.27
CCDC39Q9UFE4 ANKRD20A17P-201ENST00000511745 1330 ntBASIC7.13□□□□□ -1.27
CCDC39Q9UFE4 SPA17-201ENST00000227135 853 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
CCDC39Q9UFE4 ZC2HC1B-201ENST00000237275 1002 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
CCDC39Q9UFE4 OR8B3-201ENST00000354597 942 ntAPPRIS P1 BASIC7.13□□□□□ -1.27
CCDC39Q9UFE4 OR5B21-201ENST00000360374 931 ntAPPRIS P1 BASIC7.13□□□□□ -1.27
CCDC39Q9UFE4 Y_RNA.41-201ENST00000362646 102 ntBASIC7.13□□□□□ -1.27
CCDC39Q9UFE4 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC7.13□□□□□ -1.27
CCDC39Q9UFE4 OR8B2-201ENST00000375013 942 ntAPPRIS P1 BASIC7.13□□□□□ -1.27
CCDC39Q9UFE4 XGY1-201ENST00000381172 446 ntBASIC7.13□□□□□ -1.27
CCDC39Q9UFE4 Y_RNA.390-201ENST00000383932 102 ntBASIC7.13□□□□□ -1.27
CCDC39Q9UFE4 SNORD116-12-201ENST00000384468 92 ntBASIC7.13□□□□□ -1.27
CCDC39Q9UFE4 RNU6-83P-201ENST00000384568 112 ntBASIC7.13□□□□□ -1.27
CCDC39Q9UFE4 AL133480.1-201ENST00000411561 638 ntTSL 2 BASIC7.13□□□□□ -1.27
CCDC39Q9UFE4 AC096669.1-202ENST00000413708 616 ntTSL 2 BASIC7.13□□□□□ -1.27
CCDC39Q9UFE4 NUTM2A-AS1-203ENST00000413961 501 ntTSL 3 BASIC7.13□□□□□ -1.27
CCDC39Q9UFE4 AC022173.1-201ENST00000418554 577 ntTSL 4 BASIC7.13□□□□□ -1.27
CCDC39Q9UFE4 NPM1P26-201ENST00000426339 738 ntBASIC7.13□□□□□ -1.27
CCDC39Q9UFE4 USP9YP31-201ENST00000431405 881 ntBASIC7.13□□□□□ -1.27
CCDC39Q9UFE4 OR6R1P-201ENST00000431838 940 ntBASIC7.13□□□□□ -1.27
CCDC39Q9UFE4 AL022324.2-201ENST00000434827 780 ntBASIC7.13□□□□□ -1.27
CCDC39Q9UFE4 RPEP4-201ENST00000437636 602 ntBASIC7.13□□□□□ -1.27
CCDC39Q9UFE4 LINC01449-201ENST00000440213 1220 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
CCDC39Q9UFE4 MIR205HG-206ENST00000440276 539 ntTSL 5 BASIC7.13□□□□□ -1.27
CCDC39Q9UFE4 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC7.13□□□□□ -1.27
CCDC39Q9UFE4 AC234781.3-201ENST00000452540 973 ntBASIC7.13□□□□□ -1.27
CCDC39Q9UFE4 AC092001.1-201ENST00000453012 261 ntBASIC7.13□□□□□ -1.27
CCDC39Q9UFE4 L29074.1-201ENST00000456072 534 ntTSL 5 BASIC7.13□□□□□ -1.27
CCDC39Q9UFE4 RN7SL393P-201ENST00000463588 296 ntBASIC7.13□□□□□ -1.27
CCDC39Q9UFE4 DEFB109A-201ENST00000482450 265 ntBASIC7.13□□□□□ -1.27
CCDC39Q9UFE4 OR9N1P-202ENST00000494289 481 ntBASIC7.13□□□□□ -1.27
CCDC39Q9UFE4 AC138853.1-201ENST00000503549 823 ntBASIC7.13□□□□□ -1.27
CCDC39Q9UFE4 AC008945.1-201ENST00000505144 499 ntBASIC7.13□□□□□ -1.27
CCDC39Q9UFE4 AC095052.1-201ENST00000509955 863 ntBASIC7.13□□□□□ -1.27
CCDC39Q9UFE4 CDC42P4-201ENST00000510507 563 ntBASIC7.13□□□□□ -1.27
CCDC39Q9UFE4 AC022447.1-201ENST00000515358 464 ntBASIC7.13□□□□□ -1.27
CCDC39Q9UFE4 AC016885.1-201ENST00000517796 532 ntTSL 4 BASIC7.13□□□□□ -1.27
CCDC39Q9UFE4 AC013549.3-201ENST00000528792 419 ntTSL 3 BASIC7.13□□□□□ -1.27
CCDC39Q9UFE4 AC118273.2-201ENST00000532092 465 ntBASIC7.13□□□□□ -1.27
CCDC39Q9UFE4 AC079600.3-201ENST00000547898 447 ntTSL 5 BASIC7.13□□□□□ -1.27
CCDC39Q9UFE4 AC009729.1-201ENST00000548873 1133 ntBASIC7.13□□□□□ -1.27
CCDC39Q9UFE4 AC004217.3-201ENST00000551552 878 ntBASIC7.13□□□□□ -1.27
CCDC39Q9UFE4 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC7.13□□□□□ -1.27
CCDC39Q9UFE4 ZNF519P3-201ENST00000557158 1032 ntBASIC7.13□□□□□ -1.27
CCDC39Q9UFE4 HMGN1P26-201ENST00000558737 303 ntBASIC7.13□□□□□ -1.27
CCDC39Q9UFE4 AC074051.3-201ENST00000570238 358 ntBASIC7.13□□□□□ -1.27
CCDC39Q9UFE4 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC7.13□□□□□ -1.27
CCDC39Q9UFE4 AC090616.2-202ENST00000584248 222 ntBASIC7.13□□□□□ -1.27
CCDC39Q9UFE4 AL589863.1-201ENST00000595383 631 ntBASIC7.13□□□□□ -1.27
CCDC39Q9UFE4 VN1R90P-201ENST00000595717 726 ntBASIC7.13□□□□□ -1.27
CCDC39Q9UFE4 LSM1P2-201ENST00000604911 322 ntBASIC7.13□□□□□ -1.27
CCDC39Q9UFE4 ARF4-AS1-203ENST00000607782 552 ntTSL 3 BASIC7.13□□□□□ -1.27
CCDC39Q9UFE4 Metazoa_SRP.77-201ENST00000616915 252 ntBASIC7.13□□□□□ -1.27
CCDC39Q9UFE4 MIR7159-201ENST00000620587 66 ntBASIC7.13□□□□□ -1.27
CCDC39Q9UFE4 AC092794.2-201ENST00000620933 563 ntBASIC7.13□□□□□ -1.27
CCDC39Q9UFE4 AC211486.4-201ENST00000621495 113 ntBASIC7.13□□□□□ -1.27
CCDC39Q9UFE4 RBM12B-AS1-201ENST00000623283 653 ntBASIC7.13□□□□□ -1.27
CCDC39Q9UFE4 TPK1-207ENST00000538212 2243 ntTSL 2 BASIC7.13□□□□□ -1.27
CCDC39Q9UFE4 AC027279.4-201ENST00000624371 2072 ntBASIC7.13□□□□□ -1.27
CCDC39Q9UFE4 AL121594.3-201ENST00000557565 3857 ntAPPRIS P1 TSL 2 BASIC7.13□□□□□ -1.27
CCDC39Q9UFE4 FHL1-218ENST00000543669 2878 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
CCDC39Q9UFE4 CHST9-203ENST00000618847 11388 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
CCDC39Q9UFE4 VEZT-204ENST00000436874 4562 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
CCDC39Q9UFE4 GDPD4-201ENST00000315938 2533 ntAPPRIS P2 TSL 1 (best) BASIC7.12□□□□□ -1.27
CCDC39Q9UFE4 ATP6V1A-201ENST00000273398 4591 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
CCDC39Q9UFE4 ASXL2-203ENST00000435504 12878 ntAPPRIS P5 TSL 5 BASIC7.12□□□□□ -1.27
CCDC39Q9UFE4 VWC2L-201ENST00000312504 4610 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
CCDC39Q9UFE4 PIH1D3-201ENST00000336387 993 ntAPPRIS P1 TSL 5 BASIC7.12□□□□□ -1.27
CCDC39Q9UFE4 OR52B6-201ENST00000345043 1008 ntAPPRIS P1 BASIC7.12□□□□□ -1.27
CCDC39Q9UFE4 SNORD1C-201ENST00000363315 78 ntBASIC7.12□□□□□ -1.27
CCDC39Q9UFE4 RNA5SP485-201ENST00000365053 119 ntBASIC7.12□□□□□ -1.27
CCDC39Q9UFE4 RNU6-316P-201ENST00000391027 107 ntBASIC7.12□□□□□ -1.27
CCDC39Q9UFE4 OR6C69P-201ENST00000394268 893 ntBASIC7.12□□□□□ -1.27
CCDC39Q9UFE4 AL603865.2-201ENST00000401679 213 ntBASIC7.12□□□□□ -1.27
Retrieved 100 of 98,524 protein–RNA pairs in 80.4 ms